doc/SmallTools/ctfFunction.html

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   2 <HEAD>
   3 <TITLE>ctfFunction</TITLE>
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   5 <BODY>
   6 <H1>ctfFunction</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: ctfFunction
  10 Options:
  11     [-o[utput]           Out                 (stdout    ).as(outFile             ) ] :Optional  :OutputDataFile
  12     [-Rmax               Rmax                (0.1       ).as(Real                ) ] :Optional  :Rmax[/A]
  13     [-dR                 dR                  (0.0001    ).as(Real                ) ] :Optional  :dR[/A]
  14     [-kV                 kV                  (200       ).as(Real                ) ] :Optional  :AccVol[kV]
  15     [-Cs                 Cs                  (2.1       ).as(Real                ) ] :Optional  :Cs[mm]
  16     [-df                 Defocus             (27000     ).as(Real                ) ] :Essential :Defocus[A]:under(+)
  17     [-A                  AoverP              (0.0       ).as(Real                ) ] :Optional  :AmplitudeContrast/PhaseContrast
  18     [-Ain                Ain                 (0.02      ).as(Real                ) ] :Optional  :IlluminationAperture[mrad]
  19     [-ctfMode            ctfMode             (32        ).as(Integer             ) ] :Optional  :CTFMode
  20     [-pvm                pvm                 (0         ).as(Integer             ) ] :Optional  :PVM: MultiProcessor
  21     [-pvmList            pvmList             (stdin     ).as(inFile              ) ] :Optional  :PVM Host List: MultiProcessor
  22     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
  23     [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
  24 >>>> ctfMode <<<<
  25  0: Phase CTF
  26  1: PhaseCTF + ratio*AmpCTF
  27  32: EnvFromAillumination*()
  28 >>>> mode <<<<
  29 No action
  30 </PRE>
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