doc/SmallTools/mrcImageDensityNormalizationByImage.html

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   2 <HEAD>
   3 <TITLE>mrcImageDensityNormalizationByImage</TITLE>
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   5 <BODY>
   6 <H1>mrcImageDensityNormalizationByImage</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: mrcImageDensityNormalizationByImage
  10 Options:
  11     [-i[nput]            In                  (NULL      )] :Essential :Test: Input
  12     [-r[ef]              Ref                 (NULL      )] :Essential :Reference: Input
  13     [-o[utput]           Out                 (NULL      )] :Essential :NormalizedImage:  Output
  14     [-O[utput]           OutParam            (stdout    )] :Optional  :Parameters:       Output
  15     [-D[ataForNormalizing]UsedData            (stdout    )] :Optional  :DataList to be used
  16     [-Cylinder           CCenterX            (20        )CCenterY            (20        )CMinR               (10        )CMaxR               (20        )] :Optional  :Cylinder Region
  17     [-testBG[Region]     tstBGMin            (-3        )tstBGMax            (3         )tstBGDelta          (0.1       )] :Optional  :SearchRegion
  18     [-M[ode]             fitMode             (0         )] :Optional  :DensityFittngMethod: Mode
  19     [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
  20     [-m[ode]             mode                (0         )] :Optional  :Mode
  21 ----- Additional Usage -----
  22 ----- Mode -----
  23   1: Sigma!=1.0
  24   2: Stdout
  25   4: Reversed
  26   8: Robust Test
  27 Fitting Mode
  28   0: Single Line
  29         ref    /
  30           ^   /   ref = A + B*tst
  31           |  /
  32           |------> tst
  33   1: Single Line with Background
  34         ref      /
  35           ^     /   ref = A + B*tst (tst>tstBG)
  36  refBG-   | ___/          refBG     (tst<tstBG)
  37           | ------> tst
  38                |
  39               tstBG
  40 </PRE>
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