doc/SmallTools/mrcImageDensityNormalizationByImage.html

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   2 <HEAD>
   3 <TITLE>mrcImageDensityNormalizationByImage</TITLE>
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   5 <BODY>
   6 <H1>mrcImageDensityNormalizationByImage</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: mrcImageDensityNormalizationByImage
  10 Options:
  11     [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :Test: Input
  12     [-r[ef]              Ref                 (NULL      ).as(inFile              ) ] :Essential :Reference: Input
  13     [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :NormalizedImage:  Output
  14     [-O[utput]           OutParam            (stdout    ).as(outFile             ) ] :Optional  :Parameters:       Output
  15     [-D[ataForNormalizing]UsedData            (stdout    ).as(outFile             ) ] :Optional  :DataList to be used
  16     [-Cylinder           CCenterX            (20        ).as(Real                )
  17                          CCenterY            (20        ).as(Real                )
  18                          CMinR               (10        ).as(Real                )
  19                          CMaxR               (20        ).as(Real                ) ] :Optional  :Cylinder Region
  20     [-testBG[Region]     tstBGMin            (-3        ).as(Real                )
  21                          tstBGMax            (3         ).as(Real                )
  22                          tstBGDelta          (0.1       ).as(Real                ) ] :Optional  :SearchRegion
  23     [-M[ode]             fitMode             (0         ).as(Integer             ) ] :Optional  :DensityFittngMethod: Mode
  24     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
  25     [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
  26 ----- Additional Usage -----
  27 ----- Mode -----
  28   1: Sigma!=1.0
  29   2: Stdout
  30   4: Reversed
  31   8: Robust Test
  32 Fitting Mode
  33   0: Single Line
  34         ref    /
  35           ^   /   ref = A + B*tst
  36           |  /
  37           |------> tst
  38   1: Single Line with Background
  39         ref      /
  40           ^     /   ref = A + B*tst (tst>tstBG)
  41  refBG-   | ___/          refBG     (tst<tstBG)
  42           | ------> tst
  43                |
  44               tstBG
  45 </PRE>
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