doc/SmallTools/mrcImageFourierNeighborCorrelation.html

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   3 <TITLE>mrcImageFourierNeighborCorrelation</TITLE>
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   6 <H1>mrcImageFourierNeighborCorrelation</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: mrcImageFourierNeighborCorrelation
  10 Options:
  11     [-i[nput]            In                  (NULL      ).as(inFile::mrcImage    ) ] :Essential :Input
  12     [-o[utput]           Out                 (stdout    ).as(outFile::ASCII      ) ] :Optional  :Output:FNC
  13     [-d[elta]            delta               (0.0       ).as(Real                ) ] :Optional  :Mode
  14     [-C[enter]           Centre              (0         ).as(Integer             ) ] :Optional  :CentreMode
  15     [-M[ode]             GetMode             (0         ).as(Integer             ) ] :Optional  :PixelDataGetHowToGet: InterpolationMode
  16     [-FSC                                                                          ] :Optional  :Output:predicted FSC
  17     [-Cref                                                                         ] :Optional  :Output:Cref
  18     [-FSCfull                                                                      ] :Optional  :Output:FSC full
  19     [-NoiseWeighted      Brestore            (0.0       ).as(Real                ) ] :Optional  :NoiseWeighted: Cref*exp(-Brestore/(4*d^2)
  20     [-mask               InMask              (NULL      ).as(inFile::mrcImage    ) ] :Optional  :Input: Mask for FSC
  21     [-maskBack           InBackMask          (NULL      ).as(inFile::mrcImage    ) ] :Optional  :Input: Mask for FSC Back
  22     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
  23     [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
  24 ----- Additional Usage -----
  25 0: Centre is ImageCentre Shift: (Nx/2.0, Ny/2.0, Nz/2.0 )
  26 1: Centre is BottomLeft  Shift: (0,      0,      0      )
  27 2: Use StartN            Shift: (StartNx,StartNy,StartNz)
  28 Duncan Sousa, Nikolaus Grigorieff, 2007, JSB
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