doc/SmallTools/mrcImagePrint.html

   1 <HTML>
   2 <HEAD>
   3 <TITLE>mrcImagePrint</TITLE>
   4 </HEAD>
   5 <BODY>
   6 <H1>mrcImagePrint</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: mrcImagePrint
  10 Options:
  11     [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputImageFile
  12     [-o[utput]           Out                 (stdout    ).as(outFile             ) ] :Optional  :OutputImageFile
  13     [-H[ighThreshold]    thresHigh           (0.0       ).as(Real                ) ] :Optional  :High Threshold
  14     [-L[owThreshold]     thresLow            (1.0       ).as(Real                ) ] :Optional  :Low Threshold
  15     [-Section            section             (z         ).as(Character           ) ] :Optional  :[z|x|y]Section: Def: z-section
  16     [-x[Section]         xMin                (0         ).as(Integer             )
  17                          xMax                (0         ).as(Integer             ) ] :Optional  :x section
  18     [-y[Section]         yMin                (0         ).as(Integer             )
  19                          yMax                (0         ).as(Integer             ) ] :Optional  :y section
  20     [-z[Section]         zMin                (0         ).as(Integer             )
  21                          zMax                (0         ).as(Integer             ) ] :Optional  :z section
  22     [-S[cale]            Scale               (1.0       ).as(Real                ) ] :Optional  :Scale(Centre is Bottom Left): -S 1 := 1 mm/pixel
  23     [-A[bsolute]S[cale]  AbScale             (1.0       ).as(Real                ) ] :Optional  :Scale(Centre is Bottom Left): -AS 1 := 1 mm/A (Real) or 1 mm/A-1 (Fourier Space)
  24     [-E[nlarge]          Enlarge             (1.0       ).as(Real                ) ] :Optional  :Enlargement(image center is center)
  25     [-center             cx                  (0.0/* in case of FT or N.x/2.0 in case of Image*/).as(Real                )
  26                          cy                  (0.0/* in case of FT or N.y/2.0 in case of Image */).as(Real                ) ] :Optional  :Center of a printed image
  27     [-C[ontour]          contourLevel        (1.0       ).as(Real                ) ... ] :Variable  :ContourLevel
  28     [-I[nverse]                                                                    ] :Optional  :Black is High Density.
  29     [-A[uto]                                                                       ] :Optional  :HighThres=Mean-SD, LowThres=Mean+SD
  30     [-AC[ontour]         AutoContour         (10        ).as(Integer             ) ] :Optional  :Auto Contour(thresHigh <-> mean)
  31     [-PC[ontour]         PeakContour         (10        ).as(Integer             ) ] :Optional  :Peak Contour(thresHigh <-> (mean+thresHigh)/2
  32     [-AC[ontour]2        AutoContour2        (10        ).as(Integer             ) ] :Optional  :Auto Contour2(thresHigh <-> thresLow)
  33     [-Y[expand]          Yexpand             (1         ).as(Real                ) ] :Optional  :Y-axis expanding
  34     [-RGB                Red                 (0         ).as(Real                )
  35                          Green               (0         ).as(Real                )
  36                          Blue                (0         ).as(Real                ) ] :Optional  :Contour Color Mode: RGB
  37     [-RGBGradient        RedFirst            (0         ).as(Real                )
  38                          GreenFirst          (0         ).as(Real                )
  39                          BlueFirst           (0         ).as(Real                )
  40                          RedLast             (0         ).as(Real                )
  41                          GreenLast           (0         ).as(Real                )
  42                          BlueLast            (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: RGB
  43     [-HSB                Hue                 (0         ).as(Real                )
  44                          Saturation          (0         ).as(Real                )
  45                          Brightness          (0         ).as(Real                ) ] :Optional  :Contour Color Mode: HSB
  46     [-HSBGradient        HueFirst            (0         ).as(Real                )
  47                          SaturationFirst     (0         ).as(Real                )
  48                          BrightnessFirst     (0         ).as(Real                )
  49                          HueLast             (0         ).as(Real                )
  50                          SaturationLast      (0         ).as(Real                )
  51                          BrightnessLast      (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: HSB
  52     [-LineColourRGB      LineRed             (0         ).as(Real                )
  53                          LineGreen           (0         ).as(Real                )
  54                          LineBlue            (0         ).as(Real                ) ] :Optional  :Contour Color Mode: RGB
  55     [-LineColourRGBGradientLineRedFirst        (0         ).as(Real                )
  56                          LineGreenFirst      (0         ).as(Real                )
  57                          LineBlueFirst       (0         ).as(Real                )
  58                          LineRedLast         (0         ).as(Real                )
  59                          LineGreenLast       (0         ).as(Real                )
  60                          LineBlueLast        (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: RGB
  61     [-LineColourHSB      LineHue             (0         ).as(Real                )
  62                          LineSaturation      (0         ).as(Real                )
  63                          LineBrightness      (0         ).as(Real                ) ] :Optional  :Contour Color Mode: HSB
  64     [-LineColourHSBGradientLineHueFirst        (0         ).as(Real                )
  65                          LineSaturationFirst (0         ).as(Real                )
  66                          LineBrightnessFirst (0         ).as(Real                )
  67                          LineHueLast         (0         ).as(Real                )
  68                          LineSaturationLast  (0         ).as(Real                )
  69                          LineBrightnessLast  (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: HSB
  70     [-LineChange         LineColorChange     (0.1       ).as(Real                ) ] :Optional  :Contour Color Change
  71     [-LineWidthStart     LineWidthStart      (0.1       ).as(Real                ) ] :Optional  :Contour Line Width Step
  72     [-LineWidthStep      LineWidthStep       (0.05      ).as(Real                ) ] :Optional  :Contour Line Width Step
  73     [-ReverseOrder                                                                 ] :Optional  :Reverse Print Order
  74     [-Untwist            untwist             (0.0       ).as(Real                ) ] :Optional  :Untwist Angle [degree/A], example: (-13,28) = 0.4709576
  75     [-UpsideDown                                                                   ] :Optional  :Upside Down
  76     [-Centre                                                                       ] :Optional  :Image Centre is at the centre of paper.
  77     [-CircleRadius       CircleRadius        (0.5       ).as(Real                ) ] :Optional  :Radius of circles in the case of imageCircles
  78     [-m[ode]             mode                (49        ).as(Integer             ) ] :Optional  :Mode
  79 ----- mode -----
  80                      1: ImageDensity
  81                      2: Contour(DiffrentLineWidth)
  82                      4: Contour(SameLineWidth)
  83                      8: BlackCircles
  84                     16: Scale
  85                     32: Centre Mark
  86                 16777216: Amplitude by AsciiFile
  87                 33554432: Log of Amplitude by AsciiFile
  88                 67108864: Phase by AsciiFile
  89 ----- Attention !! -----
  90                                 -C  option is stronger than -AC and -PC
  91                                 -PC option is stronger than -AC
  92                                         -AC: (i+1)*(max-maen)  /(AC+1) + mean
  93                                         -PC: (i  )*(max+mean)/2)/AC     + (max+mean)/2
  94 ----- Attention 2!! -----
  95                                 -AS option is stronger than -S option
  96                                 The default value of -AS option is ignored.
  97                                 The default value of -S option is used.
  98                                 Both options are applied to y-axis.
  99 </PRE>
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