doc/SmallTools/mrcImageROI.html

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   2 <HEAD>
   3 <TITLE>mrcImageROI</TITLE>
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   5 <BODY>
   6 <H1>mrcImageROI</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: mrcImageROI
  10 Options:
  11     [-i[nput]            In                  (NULL      ).as(inFile::mrcImage    ) ] :Essential :Input
  12     [-o[utput]           Out                 (NULL      ).as(outFile::mrcImage   ) ] :Essential :Output
  13     [-r[oi]              blx                 (0.0       ).as(Real                )
  14                          bly                 (0.0       ).as(Real                )
  15                          brx                 (0.0       ).as(Real                )
  16                          bry                 (0.0       ).as(Real                )
  17                          trx                 (0.0       ).as(Real                )
  18                          try                 (0.0       ).as(Real                )
  19                          tlx                 (0.0       ).as(Real                )
  20                          tly                 (0.0       ).as(Real                ) ] :Optional  :Rectangle ROI
  21     [-x                  WidthBeforeExpansion(1.0       ).as(Real                ) ] :Optional  :Width  before expansion: /* Default is set by -r */
  22     [-y                  HeightBeforeExpansion(1.0       ).as(Real                ) ] :Optional  :Height before expansion: /* Default is set by -r */
  23     [-a[ngle]            Angle               (0.0       ).as(Real                ) ] :Optional  :This value [degree] is added to angle of current source image.
  24     [-W                  WidthAfterExpansion (1.0       ).as(Real                ) ] :Optional  :Width  after expansion[Pixel]
  25     [-H                  HeightAfterExpansion(1.0       ).as(Real                ) ] :Optional  :Height after expansion[Pixel]:
  26                 ROI Size is (10,20):
  27                         If -W 30 -H 40, out (30,40)
  28                         If -W 30, out (30, 20*30/10)
  29                         If -H 40, out (10*40/20,40)
  30                                 If omitted, out (10,20)
  31     [-Shift              ShiftX              (0.0       ).as(Real                )
  32                          ShiftY              (0.0       ).as(Real                ) ] :Optional  :ROI ARea Shift [Pixel]
  33     [-turePitch          truePitch           (430.0     ).as(Real                ) ] :Optional  :truePitch [A]
  34     [-dY                 dY                  (0.0       ).as(Real                ) ] :Optional  :Number of turePitch
  35     [-Ly                 Ly                  (5.0       ).as(Real                ) ] :Optional  :Header Length y [A/Pixel]
  36     [-S[hrink]           Shrink              (1         ).as(Integer             ) ] :Optional  :When inputfile is shrinked
  37     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
  38     [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
  39 ---- mode ----
  40         0: Nearest Neighbor Method
  41         1: Bilinear method
  42         2: Cubic Convolution method
  43         3: Polynominal method
  44 ---- Note  (Magnification change for normalize)----
  45 -truePitch, -dY and -Ly options make
  46 H[pixel] = truePitch[A] / Ly[A/pixel] x dY
  47 </PRE>
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