doc/SmallTools/mrcImageShapePCA.html

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   2 <HEAD>
   3 <TITLE>mrcImageShapePCA</TITLE>
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   6 <H1>mrcImageShapePCA</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: mrcImageShapePCA
  10 Options:
  11     [-i[nput]            In                  (NULL      ).as(inFile::mrcImage    ) ] :Essential :Input: mrcImage
  12     [-o[utput]           Out                 (stdout    ).as(outFile::ASCII      ) ] :Optional  :Output: ASCII
  13     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
  14     [-m[ode]             mode                (1         ).as(Integer             ) ] :Optional  :Mode
  15     [-C[ontour]          Contour             (1.0       ).as(Real                ) ... ] :Variable  :Contour
  16 ----- Additional Usage -----
  17 -C : ContourLevels
  18    e.g. -C  20  30  40
  19            100% 60% 40%
  20 ----- Objectives -----
  21 Determine the orientations/molecular axis by PCA alogrism
  22   $ mrcImageShapePCA -i mrc -o parameter -C C1 C2 C3 ...
  23 -m
  24   +1: Sphere (default)
  25   +2: Disk
  26   +4: Cylinder
  27
  28 </PRE>
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