doc/SmallTools/mrcImageSymmetryFind.html

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   2 <HEAD>
   3 <TITLE>mrcImageSymmetryFind</TITLE>
   4 </HEAD>
   5 <BODY>
   6 <H1>mrcImageSymmetryFind</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: mrcImageSymmetryFind
  10 Options:
  11     [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
  12     [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Optional  :Output: correlation
  13     [-O[utput]           Out2                (stdout    ).as(outFile             ) ] :Optional  :Output: SymmetryInformation
  14     [-A[verage]          Avg                 (NULL      ).as(outFile             ) ] :Optional  :Output: Average
  15     [-centreMode         centreMode          (1         ).as(Integer             ) ] :Optional  :Input: 0 : Gravity of Centre; 1 : Search n-fold
  16     [-t1[threshold1]     threshold1          (1.8       ).as(Real                ) ] :Optional  :Threshold of CheckByAdd
  17     [-t2[threshold2]     threshold2          (0.9       ).as(Real                ) ] :Optional  :Threshold in deciding the symmetry number
  18     [-m1[mode1]          mode1               (3         ).as(Integer             ) ] :Optional  :Mode of Check
  19     [-m2[mode2]          mode2               (2         ).as(Integer             ) ] :Optional  :Mode of Substruction
  20     [-dr[delta r]        dr                  (1         ).as(Real                ) ] :Optional  :Delta r of outputfile.
  21     [-dtheta[delta theta]dtheta              (1         ).as(Real                ) ] :Optional  :Delta theta of outputfile.[DEGREE]
  22     [-n[umber]           n                   (10        ).as(Integer             ) ] :Optional  :Check to the number.
  23     [-n[umber]Range      nmin                (2         ).as(Integer             )
  24                          nmax                (10        ).as(Integer             ) ] :Optional  :Check to the number.
  25     [-In                 Image               (NULL      ).as(inFileList          )
  26                          Back                (NULL      ).as(inFileList          ) ] :Optional  :InputDataFile: Image and Back
  27     [-rangex             minx                (-3        ).as(Real                )
  28                          maxx                (3         ).as(Real                )
  29                          delx                (1         ).as(Real                ) ] :Optional  :Input:
  30     [-rangey             miny                (-3        ).as(Real                )
  31                          maxy                (3         ).as(Real                )
  32                          dely                (1         ).as(Real                ) ] :Optional  :Input:
  33     [-rangez             minz                (0         ).as(Real                )
  34                          maxz                (0         ).as(Real                )
  35                          delz                (1         ).as(Real                ) ] :Optional  :Input:
  36     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
  37 ----- Additional Usage -----
  38 >>>> check type mode
  39     1 : Check by Add
  40     2 : Check by Correlation
  41     4 : Check by Fourier
  42     8 : Check by TTest
  43     16 : Check by SRP
  44 >>>> centre type mode
  45     0 : Centre is GC (gravity of centre)
  46     1 : Centre is Rotational Symmetry
  47 >>>> subtrcation type mode
  48     0 : No Subtraction
  49     1 : Mean Subtraction
  50     2 : Min Subtraction
  51 </PRE>
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