doc/SmallTools/pdb2mrc.html

   1 <HTML>
   2 <HEAD>
   3 <TITLE>pdb2mrc</TITLE>
   4 </HEAD>
   5 <BODY>
   6 <H1>pdb2mrc</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: pdb2mrc
  10 Options:
  11     [-i[nput]            In                  (NULL      )] :Essential :InputDataFile
  12     [-o[utput]           Out                 (NULL      )] :Optional  :OutputDataFile(3D)
  13     [-nx                 nx                  (1         )] :Optional  :Pixel[Def:]
  14     [-ny                 ny                  (1         )] :Optional  :Pixel[Def:]
  15     [-nz                 nz                  (1         )] :Optional  :Pixel[Def:]
  16     [-Sx[tart]           Startx              (0.0       )] :Optional  :Startx[A]
  17     [-Sy[tart]           Starty              (0.0       )] :Optional  :Starty[A]
  18     [-Sz[tart]           Startz              (0.0       )] :Optional  :Startz[A]
  19     [-dx                 dx                  (2.5       )] :Optional  :dx
  20     [-dy                 dy                  (2.5       )] :Optional  :dy
  21     [-dz                 dz                  (2.5       )] :Optional  :dz
  22     [-w[eight]           Weight              (1.0       )] :Optional  :Weight
  23     [-sig[ma]            Sigma               (0.0       )] :Optional  :Sigma[A]
  24     [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
  25     [-m[ode]             mode                (0         )] :Optional  :Mode
  26 >>> mode
  27 mode: DensityMode
  28 0: Same Gaussian
  29 1: WentzelAtomModel
  30 </PRE>
  31 </BODY>
  32 </HTML>