doc/SmallTools/pdbSurface.html

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   2 <HEAD>
   3 <TITLE>pdbSurface</TITLE>
   4 </HEAD>
   5 <BODY>
   6 <H1>pdbSurface</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: pdbSurface
  10 Options:
  11     [-i[nput]            In                  (NULL      )] :Essential :Input: pdbFile
  12     [-o[utput]           Out                 (NULL      )] :Essential :Output: pdbFile
  13     [-order              order               (1.7       )] :Optional  :Order: [A]
  14     [-refine             refine              (2         )] :Optional  :Refine: Meshsize = Order/Refine
  15     [-size               size                (3         )] :Optional  :Refine: Shell thickness = Order/Refine*Size
  16     [-weight             weight              (100.0     )] :Optional  :Weight
  17     [-mergin             mergin              (3.0       )] :Optional  :SearchArea
  18     [-thres              thresHold           (0.0       )] :Optional  :thresHold
  19     [-densityMode        DensityMode         (0         )] :Optional  :DensityMode
  20     [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
  21     [-m[ode]             mode                (0         )] :Optional  :Mode
  22 ----- Additional Usage -----
  23 </PRE>
  24 </BODY>
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