include/lmrcImageCTFDetermination.h

   1 #ifndef MRC_CTF_DETERMINATION_H
   2 #define MRC_CTF_DETERMINATION_H
   3
   4 /* in lmrcImageCTFDetermination.c */
   5
   6 #include "ctfInfo.h"
   7 #include "mrcImage.h"
   8 #include "lllDataCTFCompensate.h"
   9 #include "lll2ltlg.h"
  10 #include "lltlg2mrc.h"
  11 #include "lmrcImageSolventFlattening.h"
  12 #include "lmrcImageProjection.h"
  13 #include "lmrcImageCrystalCreate.h"
  14 #include "lllExtractdYEstimate.h"
  15 #include "lmrcImagePad.h"
  16
  17 /* struct begin */
  18 typedef struct lmrcImageCTFDeterminationInfo {
  19         ctfInfo val;
  20         ctfInfo min;
  21         ctfInfo max;
  22         ctfInfo del;
  23         mrcImageParaTypeReal Rmax;
  24         mrcImageParaTypeReal Rmin;
  25         mrcImage Dif;
  26         double minResidual;
  27         double minDef;
  28         double minRatio;
  29         FILE*   Out;
  30         int flagOutF;
  31         mrcImage resFFT;
  32 } lmrcImageCTFDeterminationInfo;
  33
  34 typedef struct lmrcImageCTFDeterminationInfoMode {
  35         long FilterType;
  36         long WeightType;
  37         long SumType;
  38         long CTFInfoType;
  39 } lmrcImageCTFDeterminationInfoMode;
  40
  41 typedef struct lmrcImageCTFDeterminationInfoRef {
  42         FILE* fptIn;
  43         char* In;
  44         FILE* fptRef;
  45         char* Ref;
  46         FILE* fptOut;
  47         char* Out;
  48         char MrcOut[100];
  49         mrcImage* in;
  50         mrcImage* out;
  51         long Width;
  52         float PixelSize;
  53         float truePitch;
  54         float firstDf;
  55         float withinDf;
  56         float firstAoverP;
  57         float withinAoverP;
  58         mrcImageParaTypeReal maxiter;
  59         mrcImageParaTypeReal iter;
  60 } lmrcImageCTFDeterminationInfoRef;
  61
  62 /* struct end */
  63
  64 /* prototype begin */
  65
  66 extern void lmrcImageCTFDetermination (lmrcImageCTFDeterminationInfo *linfo,
  67                                                                            lmrcImageCTFDeterminationInfoRef *refinfo,
  68                                                                         mrcImage* in, mrcImage* ref,
  69                                                                            lmrcImageCTFDeterminationInfoMode *Mode);
  70
  71 extern void lmrcImageCTFDeterminationResultFFT (lmrcImageCTFDeterminationInfo *linfo,
  72                                                                                         lmrcImageCTFDeterminationInfoRef *refinfo,
  73                                                                                      mrcImage* in, mrcImage* ref,
  74                                                                                                 lmrcImageCTFDeterminationInfoMode *Mode);
  75
  76 extern double MagWeightForCTFDetermine(double inMag, double refMag,
  77                                                                          long mode);
  78
  79 extern void lmrcImageCTFDeterminationCreateRefFilebyNearFar3DReconstInitializeLL
  80                                                         (lmrcImageCTFDeterminationInfoRef *refinfo,
  81                                                          lllDataCTFCompensateInfo *llctfinfo,
  82                                                          lll2ltlgInfo *ll2ltlginfo,
  83                                                          lltlg2mrcInfo *ltlg2mrcinfo);
  84
  85 extern void lmrcImageCTFDeterminationCreateRefFilebyNearFar3DReconstInitializeMRC
  86                                                         (lmrcImageCTFDeterminationInfoRef *refinfo,
  87                                                      mrcImageInformation *solinfo,
  88                                                          lmrcImageProjectionInfo *projinfo,
  89                                                          lmrcImageCrystalCreateInfo *cryinfo,
  90                                                          lmrcImagePadInfo *padinfo);
  91
  92 extern void lmrcImageCTFDeterminationCreateRefFilebyNearFar3DReconstLL
  93                                                         (lmrcImageCTFDeterminationInfoRef *refinfo,
  94                                                          lllDataCTFCompensateInfo *llctfinfo,
  95                                                          lll2ltlgInfo *ll2ltlginfo,
  96                                                          lltlg2mrcInfo *ltlg2mrcinfo);
  97
  98 extern void lmrcImageCTFDeterminationCreateRefFilebyNearFar3DReconstMRC
  99                                                         (lmrcImageCTFDeterminationInfoRef *refinfo,
 100                                                      mrcImageInformation *solinfo,
 101                                                          lmrcImageProjectionInfo *projinfo,
 102                                                          lmrcImageCrystalCreateInfo *cryinfo,
 103                                                          lmrcImagePadInfo *padinfo);
 104
 105 /* prototype end */
 106
 107 #endif
 108