include/lmrcImageSymmetryFind.h

   1 /*
   2 # %M% %Y% %I%
   3 # The latest update : %G% at %U%
   4 #
   5 #%Z% lmrcImageSymmetryFind ver %I%
   6 #%Z% Created by
   7 #%Z%
   8 #%Z% Usage : lmrcImageSymmetryFind
   9 #%Z% Attention
  10 #%Z%
  11 */
  12 #ifndef  LMRC_IMAGE_SYMMETRY_FIND_H
  13 #define  LMRC_IMAGE_SYMMETRY_FIND_H
  14
  15 #include <stdio.h>
  16 #include <stdlib.h>
  17 #include <string.h>
  18 #include <math.h>
  19 #define GLOBAL_DECLARATION
  20
  21 #undef DEBUG
  22 #include "genUtil.h"
  23 #include "Vector.h"
  24 #include "lDescartesIntoPolar.h"
  25 #include "lmrcImageTransformDescartesIntoPolar.h"
  26 #include "mrcImage.h"
  27
  28 /* struct begin */
  29 typedef enum lmrcImageSymmetryFindCheckType {
  30         lmrcImageSymmetryFindCheckTypeCheckByAdd=1,
  31         lmrcImageSymmetryFindCheckTypeCheckByCorrelation=2,
  32         lmrcImageSymmetryFindCheckTypeCheckByFourier=4,
  33         lmrcImageSymmetryFindCheckTypeCheckByTTest=8,
  34         lmrcImageSymmetryFindCheckTypeCheckBySRP=16
  35 } lmrcImageSymmetryFindCheckType;
  36
  37 typedef enum lmrcImageSymmetryFindCentreType {
  38         lmrcImageSymmetryFindCheckTypeCentreGC       = 0,
  39         lmrcImageSymmetryFindCheckTypeCentreSymmetry = 1
  40 } lmrcImageSymmetryFindCentreType;
  41
  42 typedef enum lmrcImageSymmetryFindSubtractionType {
  43         lmrcImageSymmetryFindCheckTypeNoSubtraction   = 0,
  44         lmrcImageSymmetryFindCheckTypeMeanSubtraction = 1,
  45         lmrcImageSymmetryFindCheckTypeMinSubtraction  = 2
  46 } lmrcImageSymmetryFindSubtractionType;
  47
  48 typedef struct lmrcImageSymmetryFindInfo {
  49         double dr;
  50         double dtheta;
  51         double threshold1;
  52         double threshold2;
  53         int    minNfold;
  54         int    maxNfold;
  55
  56         /* Centre */
  57         lmrcImageSymmetryFindCentreType centreMode;
  58         lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo centreInfo;
  59
  60         lmrcImageSymmetryFindSubtractionType subtractionMode; /* Subtraction Mode */
  61         int       flagImages;
  62         mrcImage  Image;
  63         mrcImage* Images;
  64         int       flagBacks;
  65         mrcImage  Back;
  66         mrcImage* Backs;
  67
  68         floatVector Value;
  69         floatVector Point;
  70         int         Symmetry;
  71
  72         FILE*    fptOut;
  73
  74         int      flagCorrelation;
  75         mrcImage correlation;
  76
  77         int      flagFourier;
  78         mrcImage  fourier;
  79
  80         int      flagTmap;
  81         mrcImage tmap;
  82
  83         int      flagAvg;
  84         mrcImage avg;
  85         char*    avgName;
  86         DescartesCoord centre;
  87 } lmrcImageSymmetryFindInfo;
  88
  89 /* struct end */
  90
  91 /* prototype begin */
  92 extern void
  93 lmrcImageSymmetryFind(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);
  94
  95 extern void
  96 lmrcImageSymmetryFindCheckByAdd(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);
  97
  98 extern void
  99 lmrcImageSymmetryFindCheckByCorrelation(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);
 100
 101 extern void
 102 lmrcImageSymmetryFindCheckByFourier(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);
 103
 104 extern void
 105 lmrcImageSymmetryFindCheckByTTest(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);
 106
 107 extern void
 108 lmrcImageSymmetryFindCheckBySRP(mrcImage* in, lmrcImageSymmetryFindInfo* linfo, int mode);
 109
 110 extern void
 111 lmrcImageSymmetryAverage(mrcImage* out, mrcImage* in, int num, DescartesCoord centre, int mode);
 112
 113 extern void
 114 lmrcImageSymmetryFindResultOut(FILE* fpt, mrcImage* in, lmrcImageSymmetryFindInfo* linfo,  int mode);
 115
 116 extern void
 117 lmrcImageSymmetryFindSubtraction(mrcImage* subout, mrcImage* in, lmrcImageSymmetryFindInfo* info, int mode);
 118
 119 extern void
 120 lmrcImageSymmetryFindModePrint(FILE* fpt);
 121
 122 extern void
 123 lmrcImageSymmetryCentreFind(mrcImage* in, DescartesCoord* centre, int mode);
 124 /* prototype end */
 125
 126 #endif