src/Tools/mrcImage/mrcImageShapeSearch/src/mrcImageShapeSearch.html

   1 <HTML>
   2 <HEAD>
   3 <TITLE>mrcImageShapeSearch</TITLE>
   4 </HEAD>
   5 <BODY>
   6 <H1>mrcImageShapeSearch</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: mrcImageShapeSearch
  10 Options:
  11     [-i[nput]            In                  (NULL      ).as(inFile::mrcImage    ) ] :Essential :Input
  12     [-o[utput]           Out                 (NULL      ).as(outFile::mrcImage   ) ] :Essential :Output
  13     [-Shape              Shape               (NULL      ).as(outFile::mrcImage   ) ] :Optional  :Output
  14     [-n[Cube]            nCube               (0         ).as(Integer             ) ] :Optional  :Mode
  15     [-Refine                                                                       ] :Optional  :Refine
  16     [-r[adius]           minR                (3         ).as(Integer             )
  17                          maxR                (5         ).as(Integer             )
  18                          delR                (1         ).as(Integer             ) ] :Optional  :Radius[pixel]
  19     [-l[ength]           minL                (3         ).as(Integer             )
  20                          maxL                (5         ).as(Integer             )
  21                          delL                (1         ).as(Integer             ) ] :Optional  :Length[pixel]
  22     [-Phi                minPhi              (0.0       ).as(Real                )
  23                          maxPhi              (359.0     ).as(Real                )
  24                          delPhi              (45.0      ).as(Real                ) ] :Optional  :around z-axis[degree]
  25     [-Theta              minTheta            (0.0       ).as(Real                )
  26                          maxTheta            (359.0     ).as(Real                )
  27                          delTheta            (45.0      ).as(Real                ) ] :Optional  :around x-axis[degree]
  28     [-Psi                minPsi              (0.0       ).as(Real                )
  29                          maxPsi              (350.0     ).as(Real                )
  30                          delPsi              (45.0      ).as(Real                ) ] :Optional  :around x-axis[degree]
  31     [-thres[Zscore]      thresZscore         (1.0       ).as(Real                ) ] :Optional  :Zscore
  32     [-interp[olationMode]interpMode          (0         ).as(Integer             ) ] :Optional  :interpMode
  33     [-O[utput]V[ector]BILDOutVectorBILD       (NULL      ).as(outFile::BILD       ) ] :Optional  :Output:BILD-vector
  34     [-O[utput]V[ector]   OutVector           (NULL      ).as(String              ) ] :Optional  :Output:vector basename
  35     [-arrow[Shape]       ArrowR1             (0.1       ).as(Real                )
  36                          ArrowR2             (0.4       ).as(Real                )
  37                          ArrowRho            (0.75      ).as(Real                ) ] :Optional  :ArrowShape
  38     [-zoom[Vector]       ZoomVector          (1.0       ).as(Real                ) ] :Optional  :Zoom
  39     [-arrowColorDisk     ArrowColorDisk0     (0.0       ).as(Real                )
  40                          ArrowColorDisk1     (1.0       ).as(Real                )
  41                          ArrowColorDisk2     (0.0       ).as(Real                ) ] :Optional  :ArrowColorDisk
  42     [-arrowColorSylinder ArrowColorSylinder0 (1.0       ).as(Real                )
  43                          ArrowColorSylinder1 (0.0       ).as(Real                )
  44                          ArrowColorSylinder2 (0.0       ).as(Real                ) ] :Optional  :ArrowColorSylinder
  45     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
  46     [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
  47 ----- Additional Usage -----
  48 0: Cylinder with radius and length
  49 1: Disk with radius and length(thickness)
  50 2: Sphere with radius
  51 </PRE>
  52 </BODY>
  53 </HTML>