src/Tools/mrcImage/mrcImageShapeSearch/src/mrcImageShapeSearch.html

   1 <HTML>
   2 <HEAD>
   3 <TITLE>mrcImageShapeSearch</TITLE>
   4 </HEAD>
   5 <BODY>
   6 <H1>mrcImageShapeSearch</H1>
   7 <H2>Usage</H2>
   8 <PRE>
   9 Usage: mrcImageShapeSearch
  10 Options:
  11     [-i[nput]            In                  (NULL      ).as(inFile::mrcImage    ) ] :Essential :Input
  12     [-o[utput]           Out                 (NULL      ).as(outFile::mrcImage   ) ] :Essential :Output
  13     [-Shape              Shape               (NULL      ).as(outFile::mrcImage   ) ] :Optional  :Output
  14     [-r[adius]           minR                (3         ).as(Integer             )
  15                          maxR                (5         ).as(Integer             )
  16                          delR                (1         ).as(Integer             ) ] :Optional  :Radius[pixel]
  17     [-l[ength]           minL                (3         ).as(Integer             )
  18                          maxL                (5         ).as(Integer             )
  19                          delL                (1         ).as(Integer             ) ] :Optional  :Length[pixel]
  20     [-Phi                minPhi              (0.0       ).as(Real                )
  21                          maxPhi              (359.0     ).as(Real                )
  22                          delPhi              (1.0       ).as(Real                ) ] :Optional  :around z-axis[degree]
  23     [-Theta              minTheta            (0.0       ).as(Real                )
  24                          maxTheta            (359.0     ).as(Real                )
  25                          delTheta            (1.0       ).as(Real                ) ] :Optional  :around x-axis[degree]
  26     [-Psi                minPsi              (0.0       ).as(Real                )
  27                          maxPsi              (0.0       ).as(Real                )
  28                          delPsi              (90.0      ).as(Real                ) ] :Optional  :around x-axis[degree]
  29     [-thres[Zscore]      thresZscore         (1.0       ).as(Real                ) ] :Optional  :Zscore
  30     [-interp[olationMode]interpMode          (0         ).as(Integer             ) ] :Optional  :interpMode
  31     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
  32     [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
  33 ----- Additional Usage -----
  34 0: Cylinder with radius and length
  35 1: Disk with radius and length(thickness)
  36 </PRE>
  37 </BODY>
  38 </HTML>