This is release 1.3 of AmberTools. The majority of the codes are licensed under the GPL, but some pieces are in the public domain, or have other license provisions. See the file "LICENSE_at" for license information. AmberTools currently consists of several codes that were previously released separately, and two new ones: nucleic acid builder (NAB): http://www.scripps.edu/case/nab.html antechamber: http://amber.scripps.edu/antechamber ptraj: http://www.chpc.utah.edu/~cheatham/software.html tleap, pbsa: http://amber.scripps.edu sleap: replace and expand tleap sqm: carry out semi-empirical and SCC-DFTB quantum chemistry calculations Future versions will add additional functionality as it becomes available. To access the installation instructions, uncompress the tar file: cd tar xvfj AmberTools-1.3.tar.bz2 Then read section 1.2 of the amber11/doc/AmberTools.pdf file.