mrcImageAutoFilamentExtract
Usage
Usage: mrcImageAutoFilamentExtract
Options:
[-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
[-i[nput]S[ource]fileInS (NULL ).as(inFile ) ] :Essential :InputSourceFile
[-o[utput]E[xtract] OutE (NULL ).as(inFile ) ] :Essential :OutputFileForExtraction
[-o[utput] Out (stdout ).as(appendFile ) ] :Optional :Output Log File
[-o[utput]F[inal] OutF (stdout ).as(outFile ) ] :Optional :OutputFinalFile
[-r[oi]ROI blx (0.0 ).as(Real )
bly (0.0 ).as(Real )
brx (0.0 ).as(Real )
bry (0.0 ).as(Real )
trx (0.0 ).as(Real )
try (0.0 ).as(Real )
tlx (0.0 ).as(Real )
tly (0.0 ).as(Real ) ] :Optional :Rectangle ROI
[-r[oi]Unbent roiLine (0.0 ).as(Real ) ... ] :Variable :
[-x x (120 ).as(Real ) ] :Optional :x range for ROI or Unbent
[-d[elta]dYmax ddYmax (0.9 ).as(Real ) ] :Optional :delta dY max
[-d[elta]dYmin ddYmin (0.2 ).as(Real ) ] :Optional :delta dY mim
[-T[ransepose] T (0 ).as(Integer ) ] :Optional :corresponding to mrcImageTransepose mode
[-maxd[elta]Y maxdY (12 ).as(Integer ) ] :Optional :Maximum number of layer line
[-H[eight] R[ange] HeightRange (0 ).as(Integer ) ] :Optional :Height Range [Pixel]
[-RMaxX RMaxX (0.05 ).as(Real ) ] :Optional :RMaxX [1/A] (supported mode 1)
[-mag mag (1.1 ).as(Real ) ] :Optional :magnification ratio
[-truePitch truePitch (430 ).as(Real ) ] :Optional :True Pitch [A]
[-PixelSize PixelSize (5 ).as(Real ) ] :Optional :Pixel Size [A]
[-finaly finaly (0 ).as(Integer ) ] :Optional :final y [pixel] for extraction
[-Ignore Ignore (0 ).as(Integer ) ] :Optional :Ignore the final y
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- Additional Usage -----
----- mode -----
0 : Meridian Reflection
1 : All layer-lines
----- NOTE for Heigth Range-----
HR option is stranger than caliculated HR
----- NOTE for ROI-----
-rROI, -rUnbent, -iS, -ddYmax, -ddYmin and -T options are for ROI
----- NOTE for File for Extraction-----
-oE file use as extraction file.
----- NOTE for FINAL-----
-finaly and -oF is for final extraction
-truePitch, -Ly and -dY are for magnification change
-Ignore option ignore finaly
This extract do with magnification and header change