mrcImageSuperResolution
Usage
Usage: mrcImageSuperResolution
Options:
[-I[nput] InOriginal (NULL ).as(inFile ) ] :Essential :Input: Original
[-i[nput] InPrevious (NULL ).as(inFile ) ] :Essential :Input: Previous
[-i[nput]c[ounter] FFTInCount (NULL ).as(inFile ) ] :Optional :Input: CounterforWeight FourierSpace
[-o[utput] Out (NULL ).as(outFile ) ] :Essential :Output: Next
[-t[ime] t (1 ).as(Integer ) ] :Optional :Number of time: Iteration(Real Space)
[-fromp[oint]1 x00 (0 ).as(Integer )
y00 (0 ).as(Integer )
z00 (0 ).as(Integer ) ] :Optional :First value near origin of coordinates: x00[pixel] y00[pixel] z00[pixel]
[-top[oint]1 x01 (2 ).as(Integer )
y01 (2 ).as(Integer )
z01 (2 ).as(Integer ) ] :Optional :target value: x01[pixel] y01[pixel] z01[pixel]
[-fromp[oint]2 x10 (0 ).as(Integer )
y10 (0 ).as(Integer )
z10 (0 ).as(Integer ) ] :Optional :First value far from origin of coordinates: x10[pixel] y10[pixel] z10[pixel]
[-top[oint]2 x11 (0 ).as(Integer )
y11 (0 ).as(Integer )
z11 (0 ).as(Integer ) ] :Optional :target value: x11[pixel] y11[pixel] z11[pixel]
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Essential :RealSpaceCalculating
[-LabelingMode labelingmode (0 ).as(Integer ) ] :Optional :LabelingMode
[-max[value] max (800 ).as(Integer ) ] :Optional :Density Max value:Support Constraint()
[-min[value] min (200 ).as(Integer ) ] :Optional :Density Min value:Support Constraint()
[-sh[ape] shape (0 ).as(Integer ) ] :Optional :Shape:0(Rectangule),1(Globe)
[-h[alf]v[alue]p[oint]hvp (0.0 ).as(Real ) ] :Optional :Half value point(/[A])
[-Inverse ] :Optional :Inverse
[-nM[olecule] nMolecule (1 ).as(Integer ) ] :Optional :Number of Molecule
[-M[olecularWeight] MolecularWeight (80000 ).as(Integer ) ] :Optional :MolecularWeight
[-D[ensity] Density (1.35 ).as(Real ) ] :Optional :Density(g/cm3)
[-counter incounter (3.0 ).as(Real ) ] :Optional :Counter(Fourier Space)
[-d[elta]Density deltaDens (100.0 ).as(Real ) ] :Optional :Delta (Convergence)
[-d[elta]Area deltaArea (100.0 ).as(Real ) ] :Optional :Area (Convergence)
[-sub[traction] sub (0.2 ).as(Real ) ] :Optional :Subtraction(Convergence)
[-ratio ratio (0.3 ).as(Real ) ] :Optional :Ratio(Convergence)
[-t[ime]max tmax (1000 ).as(Integer ) ] :Optional :Time Max(Convergence)
[-w[eight]d[elta] WeightDelta (0.1 ).as(Real ) ] :Optional :WeightDelta(Fourier Space)
[-w[eight]m[ax] WeightMax (2 ).as(Integer ) ] :Optional :WeightMax(Fourier Space)
[-Subtraction ] :Optional :Subtraction(Real Space)
----- Additional Usage -----
-m Option
1 : AreaAndLocation
2 : Density
3 : AreaAndLocationandDensity
+4 : Convergence(Option)
+16 : NonnegativeMode(before RealSpaceConstraint)
+32 : Binarization(before RealSpaceConstraint)
+64 : Labeling
+128 : SixOrientation
+256 : LowpassfilterMode(-hvp is required)
+512 : CounterMode(-ic is required)
-----------------------------------------------------
-Inverse
If high density means the location of protein, -Inverse is required for volume calculation.
-wm and -wd
weight = counter / (weightmax + counter)
weightmax -> 0 (weightdelt by weightdelta)
-LabelinMode
0 : TheLargestLabelingSearch
1 : SomeVolumeLabelingSearch
-Subtraction
Real Space Constraint for desolving edge problem