FileName:::: lmrcFFTInfo.h

typedef struct mrcFSInfo {
	double F00;	
	double Max;
	double MaxExceptForF00;
} mrcFSInfo;

/* struct end */
FileName:::: lmrcImageBinalization.h

typedef struct lmrcImageBinalizationInfo {
	double thresHold;	
	double value;	
	int flagNear;
	double near; /* pixel unit */	
}lmrcImageBinalizationInfo;

/* struct end */
FileName:::: lmrcImageCTFDetermination.h
typedef struct lmrcImageCTFDeterminationInfo {
	ctfInfo val;
	ctfInfo min;
	ctfInfo max;
	ctfInfo del;
	mrcImageParaTypeReal Rmax;
	mrcImageParaTypeReal Rmin;
	mrcImage Dif;
	double minResidual;
	double minDef;
	double minRatio;
	FILE*   Out;
	int flagOutF;
	mrcImage resFFT;
} lmrcImageCTFDeterminationInfo;

typedef struct lmrcImageCTFDeterminationInfoMode {
	long FilterType;
	long WeightType;
	long SumType;
	long CTFInfoType;
} lmrcImageCTFDeterminationInfoMode;

typedef struct lmrcImageCTFDeterminationInfoRef {
	FILE* fptIn;
	char* In;
	FILE* fptRef;
	char* Ref;
	FILE* fptOut;
	char* Out;
	char MrcOut[100];
	mrcImage* in;
	mrcImage* out;
	long Width;
	float PixelSize;
	float truePitch;
	float firstDf;
	float withinDf;
	float firstAoverP;
	float withinAoverP;
	mrcImageParaTypeReal maxiter;
	mrcImageParaTypeReal iter;
} lmrcImageCTFDeterminationInfoRef;

/* struct end */
FileName:::: lmrcImageCentre.h

typedef struct lmrcImageCenterOfMass {
  float x;
  float y;
  float z;
} lmrcImageCenterOfMass;

/* struct end */
FileName:::: lmrcImageCommonLine.h

typedef enum lmrcImageCommonLineMode {
	lmrcImageCommonLineModeImageCenterIsGC = 1
} lmrcImageCommonLineMode;


typedef enum lmrcImageCommonLineSearchMode {
	lmrcImageCommonLineSearchModeFourierSpace = 0,
	lmrcImageCommonLineSearchModeRealSpace = 1 
} lmrcImageCommonLineSearchMode;

typedef struct lmrcImageCommonLineInfo {
	/* Input */
	double dtheta;
	lmrcImageCommonLineSearchMode searchMode; 
	/* Output */
	double optimumThetaIn;
	double optimumThetaRef;
	double optimumCor; 
} lmrcImageCommonLineInfo;

/* struct end */
FileName:::: lmrcImageConnection.h
typedef struct lmrcImageConnectionInfo {
	long mode;
} lmrcImageConnectionInfo;
/* struct end */
FileName:::: lmrcImageContourSurface.h
typedef struct lmrcImageContourSurfaceInfo {
	mrcImageParaTypeReal Contour;
} lmrcImageContourSurfaceInfo;

typedef enum lmrcImageContourSurfaceMode {
	lmrcImageContourSurfaceModeSimple=0
} lmrcImageContourSurfaceMode;
/* struct end */
FileName:::: lmrcImageCorrelation.h
typedef struct lmrcImageAutoRotationCorrelationInfo {
	int iter; /* iteration */
	int nRot; /* Rotation */  
	int Method;
	float max;
	float maxTheta;
	mrcImageParaTypeRealCoord maxP;
	mrcImageInformation corInfo;
	lmrcImageSSDAInfo SSDAInfo;
	float EuclidDistance; 
	float LinearCorrelation;

	/* Restriction Rotation Area */
	int   flagRestrictionArea;
	float thetaMin;
	float thetaMax;

	int   flagXshiftOnly;
} lmrcImageAutoRotationCorrelationInfo;

typedef struct lmrcImageCorrelationRefinementInfo {
	mrcImageParaTypeRealCoord shift; 
	mrcImageParaTypeRealCoord step; 
	mrcImageParaTypeRealCoord range; 
	mrcImageInformation corInfo;
	int mode;
} lmrcImageCorrelationRefinementInfo;

/* struct end */
FileName:::: lmrcImageCrystalCreate.h
typedef struct lmrcImageCrystalCreateInfo {
	long nx;
	long ny;
	long nz;
} lmrcImageCrystalCreateInfo;
/* struct end */
FileName:::: lmrcImageDensity.h
typedef struct lmrcImageDensityInfoInfo {
	floatVector percentageVolume;
	mrcImageParaTypeRealCoord centreOfGravity;
	mrcImageParaTypeRealCoord centreOfGravitySD;
	mrcImageParaTypeRealCoord max;
	mrcImageParaTypeRealCoord maxSD;
	double                    deltaVolume; 
	mrcImage in;
} lmrcImageDensityInfoInfo;

typedef enum lmrcImageDensityInfoMode {
	mrcImageDensityInfoPercentageVolume  =1,
	mrcImageDensityInfoCentreOfGravity   =2,
	mrcImageDensityInfoMax               =4,
	mrcImageDensityInfoCentreOfGravitySD =8,
	mrcImageDensityInfoMaxSD             =16
} lmrcImageDensityInfoMode;

typedef struct lmrcImageDensityChangeEsitmationInfo0 {
	mrcImageParaTypeRealCoord change;
	mrcImageParaTypeRealCoord changeSD;
	double                    delta;
	double                    deltaSD;
	double                    deltaXY;
	double                    deltaXYSD;
} lmrcImageDensityChangeEstimationInfo0;

typedef struct lmrcImageDensityChangeEsitmationInfo {
	lmrcImageDensityChangeEstimationInfo0 CG;
	lmrcImageDensityChangeEstimationInfo0 Max;
	mrcImage in1;
	mrcImage in2;
} lmrcImageDensityChangeEstimationInfo;

typedef enum lmrcImageDensityChangeEstimationMode {
	mrcImageDensityChangeEstimationCentreOfGravity   =2,
	mrcImageDensityChangeEstimationMax               =4,
	mrcImageDensityChangeEstimationCentreOfGravitySD =8,
	mrcImageDensityChangeEstimationMaxSD             =16
} lmrcImageDensityChageEstimationMode;

/* struct end */
FileName:::: lmrcImageDensityNormalizationByImage.h
typedef struct lmrcImageDenstiyNormalizationByImageInfo {
  /* Input */
  double sigma;

  /* Region Information */
  int flagCylinder;	
  float centerx, centery;
  float minr, maxr;
  /* Fitting Mode */
  int fitMode;
  float tstBGMin;
  float tstBGMax;
  float tstBGDelta;

  /* Output */
  float a;
  float b;
  float sigma_a;
  float sigma_b;
  float chi2;
  float q;
  float r;

  float refBG;
  float tstBG;
  float	chi2Signal;
  float chi2BG;
  int nData;
  float* testData;
  float* refData; 
} lmrcImageDensityNormalizationByImageInfo;


/*
   minimization of (in1 - (a+b*in2))^2
   out = a + b*in2
*/

typedef enum lmrcImageDensityNormalizationByImageMode {
  lmrcImageDensityNormalizationByImageModeSigma   = 1,
  lmrcImageDensityNormalizationByImageModeStdout  = 2,
  lmrcImageDensityNormalizationByImageModeReverse = 4,
  lmrcImageDensityNormalizationByImageModeRobust  = 8
} lmrcImageDensityNormalizationByImageMode; 

typedef enum lmrcImageDensityNormalizationByImageFitMode {
  lmrcImageDensityNormalizationByImageFitModeSingleLine = 0,
  lmrcImageDensityNormalizationByImageFitModeSingleLineWithBackground = 1 
} lmrcImageDensityNormalizationByImageFitMode;

/* struct end */
FileName:::: lmrcImageEdgeAverage.h
typedef struct lmrcImageEdgeAverageInfo {
	/* In */
	mrcImageParaTypeInteger devide; 
	mrcImageParaTypeInteger width;
	/* Out */
	mrcImageParaTypeReal*   avg[4];
	mrcImageParaTypeReal*   count[4];
} lmrcImageEdgeAverageInfo;
/* struct end */
FileName:::: lmrcImageFilterCreate.h
typedef enum lmrcImageFilterCreateMode {
	lmrcImageFilterModeSquare=0,
	lmrcImageFilterModeCircle=1
} lmrcImageFilterCreateMode;

typedef struct lmrcImageFilterCreateInfo {
	mrcImageParaTypeInteger    np;
	mrcImageParaTypeRealCoord* p;
	mrcImageParaTypeReal*      weight;

	mrcImageParaTypeIntegerCoord N;

	mrcImageParaTypeIntegerCoord Size;

	lmrcImageFilterCreateMode shape;
	long                      outputMode;
} lmrcImageFilterCreateInfo;
/* struct end */
FileName:::: lmrcImageFirstNoiseReductionByRelaxation.h
typedef struct lmrcImageNoiseReductionByRelaxationInfo {
  /* input */
  /* OR Output */
  double SD;
  double datamax;
  double datamin;
  long classNumber;
  int ddimx; 
  int ddimy;
  int ddimz;
} lmrcImageNoiseReductionByRelaxationInfo;

typedef enum lmrcImageNoiseReductionByRelaxationMode {
  lmrcImageNoiseReductionByRelaxationModeSigma = 1,
} lmrcImageNoiseReductionByRelaxationMode; 
/* struct end */
FileName:::: lmrcImageMasking.h
typedef enum lmrcImageMaskingInfoShape {
	lmrcImageMaskingInfoShapeCircle=0,
	lmrcImageMaskingInfoSquare=0
} lmrcImageMaskingInfoShape;

typedef struct lmrcImageMaskingInfo {
        mrcImageParaTypeRealCoord n;
        mrcImageParaTypeRealCoord c;
       	lmrcImageMaskingInfoShape 	 shape;
        long mode;
} lmrcImageMaskingInfo;
/* struct end */
FileName:::: lmrcImageModelCreate.h
typedef struct _lmrcImageModelCreateMode1Info {
	float radius;
	float nHelix;
	float zPitch;
	float phiAngle;
	float deltaPhi;
	float startZ;
	float endZ;
	float startPhi;
	int     flagIn;
	mrcImage*  in;
	mrcImageDataSetMode inMode;
	int 	fm;
	int 	units;
} _lmrcImageModelCreateMode1Info;
/* struct end */
FileName:::: lmrcImageMontage.h
typedef struct lmrcImageMontageInfo {
	lmrcImagePadMode PadMode;
	lmrcImagePadInfo PadInfo;
	int nx;
	int ny;
	int                  flagMaxValue;
	mrcImageParaTypeReal MaxValue;	
	int                  flagValueAssignedToMax;
	mrcImageParaTypeReal ValueAssignedToMax;	

	int flagEdgeAverage;
	int EdgeAverageWindow;
	int flagNoAverage;
} lmrcImageMontageInfo;
/* struct end */
FileName:::: lmrcImageMove.h
typedef enum lmrcImageMoveMode {
	lmrcImageMoveModePixelUnit=0
} lmrcImageMoveMode;
/* struct end */
FileName:::: lmrcImageNormalizing.h
typedef float lmrcImageNormalizingParaTypeReal;
typedef enum lmrcImageNormalizingMode {
	lmrcImageNormalizingModeDoubleExponential=0,
	lmrcImageNormalizingModeMinMax=1,
	lmrcImageNormalizingModeUsingContour=2,
	lmrcImageNormalizingModeUsingContourWithSolventFlattening=3,
	lmrcImageNormalizingModeNoEstimation=4
} lmrcImageNormalizingMode ;

typedef struct lmrcImageNormalizingInfo {
	lmrcImageNormalizingParaTypeReal A;
	lmrcImageNormalizingParaTypeReal B; /* A x + B */
	lmrcImageNormalizingParaTypeReal ContourMin;
	lmrcImageNormalizingParaTypeReal ContourMax;
	lmrcImageNormalizingParaTypeReal ContourSolvent;
	lmrcImageNormalizingMode Mode;
} lmrcImageNormalizingInfo;
/* struct end */
FileName:::: lmrcImagePad.h
typedef struct lmrcImagePadInfo {
	mrcImageParaTypeInteger Width;
	mrcImageParaTypeInteger Height;
	mrcImageParaTypeReal Value;
	mrcImageParaTypeReal AWSize;
	mrcImageParaTypeReal AWMin;
	mrcImageParaTypeReal AWMax;
} lmrcImagePadInfo;

typedef enum lmrcImagePadMode {
	lmrcImagePadModeAverage                   = 0,
	lmrcImagePadModeAveragedYAxis             = 1,
	lmrcImagePadModeDynamicAveragedYAxis      = 2,
	lmrcImagePadModeAveragedEdge              = 3,
	lmrcImagePadModeBottomLeft                = 4,
	lmrcImagePadModeCenterWithoutAveraging    = 5,
	lmrcImagePadModeBottomLeftWithoutAveraging= 6,
	lmrcImagePadModeAveragedOutsideCircle     = 7,
	lmrcImagePadModeAveragedOutsideRing       = 8, 
	lmrcImagePadModeByValue                   = 9 
} lmrcImagePadMode;
/* struct end */
FileName:::: lmrcImagePrint.h
typedef struct mrcImagePSFilePrintInfo  {
	mrcImageParaTypeReal scale;
	mrcImageParaTypeReal contourLineColorChange;
	mrcImageParaTypeReal contourLineWidthStart;
	mrcImageParaTypeReal contourLineWidthStep;
	long centre; /* 0: bottom right or 1:centre */	
	char whichSection; /* [x|y|z] */	
	double untwistAngle; /* untwist Image */
	psImageInfo psInfo;
	mrcImageParaTypeReal circleRadius;
} mrcImagePSFilePrintInfo;
/* struct end */
FileName:::: lmrcImageProjection.h
typedef struct lmrcImageProjectionInfo{
	long mode;
	} lmrcImageProjectionInfo;
/* struct end */
FileName:::: lmrcImageROI2D.h
typedef enum lmrcImageROIShape {
    Rect   =0,
    Rect2  =1,
    Circle =2,
	Line   =3
} lmrcImageROIShape;

typedef struct lmrcImageSingleROIInfo {
    char* FileName;
    lmrcImageROIShape Shape;
    float centerx;     /* For All Shape */
    float centery;     
    float blx;         /* For Rect, Rect2, Circle */
    float bly;
    float brx;
    float bry;
    float trx;
    float try;
    float tlx;
    float tly;
	float startx;      /* For Line */
	float starty;
	float endx; 
	float endy;

	/* For Post Modification */
    int flagWidth;     /* For Rect, Rect2, Circle, Line */
    float width;
    int flagHeight;    /* For Rect, Rect2, Circle */
    float height; 

    float radius;
    int mode;

	int flagRotation;
	float angle;

	int flagMagnifiedWidth;
	float magnifiedWidth;

	int flagMagnifiedHeight;
	float magnifiedHeight;

	/* For Layer Line Information */
	int flagLayerLine;
	float truePitch;
	float Ly;
	float dY;
} lmrcImageSingleROIInfo;

typedef struct lmrcImageROIsInfo {
    lmrcImageSingleROIInfo* ROI;
    int                numROI;
} lmrcImageROIsInfo;
/* struct end */
FileName:::: lmrcImageROI3D.h
typedef struct lmrcImageROI3DInfo {
	mrcImageParaTypeReal z1;
	mrcImageParaTypeReal z2;
	int flagz; /* This is a dummy parameter the current version for the future */ 
	int flagx;
	mrcImageParaTypeReal x1;
	mrcImageParaTypeReal x2;
	int flagy;
	mrcImageParaTypeReal y1;
	mrcImageParaTypeReal y2;
} lmrcImageROI3DInfo;
/* struct end */
FileName:::: lmrcImageRadialDistribution.h
typedef struct lmrcImageRadialDistributionInfo {
	float Cx;
	float Cy;
	int flagAverage;
} lmrcImageRadialDistributionInfo;
/* struct end */
FileName:::: lmrcImageSSDA.h
typedef struct lmrcImageSSDAInfo {
	double Threshold; 	/* Threshold Level */
	double Error; 		/* Sum of residual differences at (x, y)*/
	mrcImageParaTypeRealCoord p; 		/* Lower Right Point Coordinate on Partial Image on the Input Image */
	mrcImageParaTypeRealCoord optimump; /* Optimum Point */
	mrcImageParaTypeRealCoord smin;     /* Search Area: Bottom Right */
	mrcImageParaTypeRealCoord smax; 	/* Search Area: Top Left */
	mrcImageParaTypeRealCoord predict;  /* Predictive Point */
	mrcImageParaTypeInteger n; 			/* Addition Times at (x, y)*/
} lmrcImageSSDAInfo;

/* struct end */
FileName:::: lmrcImageSamplingUnitChange.h
typedef struct lmrcImageSamplingUnitChangeInfo {
	mrcImageParaTypeRealCoord    L;
	mrcImageParaTypeIntegerCoord N;
	mrcImageParaTypeInteger      SamplingMethodMode;
} lmrcImageSamplingUnitChangeInfo;
/* struct end */
FileName:::: lmrcImageSecondNoiseReductionByRelaxation.h
typedef enum lmrcImageSecondNoiseReductionByRelaxationDijStyleMode1 {
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode1SavitzyGolay = 1
} lmrcImageSecondNoiseReductionByRelaxationDijStyleMode1;
  
typedef enum lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2 {
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2Rectangle = 1,
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2Circle = 2
} lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2;

typedef enum lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3 {
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3FiveTimesFive = 1,
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3SevenTimesSeven = 2
} lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3;
/* struct end */
FileName:::: lmrcImageSinogram.h
typedef struct lmrcImageSinogramInfo {
	double dphi;
	int correlationMode;
} lmrcImageSinogramInfo;
/* struct end */
FileName:::: lmrcImageSolventFlattening.h
typedef struct lmrcImageSolventFlatteningInfo {
	double density;
	long flagdensity;
} lmrcImageSolventFlatteningInfo;
/* struct end */
FileName:::: lmrcImageSphere.h
typedef struct lmrcImageSphereInfo {
		float size;
		float r;
		float w;
		long mode;
}lmrcImageSphereInfo;
/* struct end */
FileName:::: lmrcImageSymmetryFind.h
typedef enum lmrcImageSymmetryFindCheckType {
	lmrcImageSymmetryFindCheckTypeCheckByAdd=1,
	lmrcImageSymmetryFindCheckTypeCheckByCorrelation=2,
	lmrcImageSymmetryFindCheckTypeCheckByFourier=4,
	lmrcImageSymmetryFindCheckTypeCheckByTTest=8,
	lmrcImageSymmetryFindCheckTypeCheckBySRP=16
} lmrcImageSymmetryFindCheckType;

typedef enum lmrcImageSymmetryFindCentreType {
	lmrcImageSymmetryFindCheckTypeCentreGC       = 0,
	lmrcImageSymmetryFindCheckTypeCentreSymmetry = 1 
} lmrcImageSymmetryFindCentreType;

typedef enum lmrcImageSymmetryFindSubtractionType {
	lmrcImageSymmetryFindCheckTypeNoSubtraction   = 0,
	lmrcImageSymmetryFindCheckTypeMeanSubtraction = 1,
	lmrcImageSymmetryFindCheckTypeMinSubtraction  = 2 
} lmrcImageSymmetryFindSubtractionType;

typedef struct lmrcImageSymmetryFindInfo {
	double dr;
	double dtheta;
	double threshold1;
	double threshold2;
	int    maxNfold;

	/* Centre */
	lmrcImageSymmetryFindCentreType centreMode;
	lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo centreInfo;

	lmrcImageSymmetryFindSubtractionType subtractionMode; /* Subtraction Mode */
	int       flagImages;
	mrcImage  Image;
	mrcImage* Images;
	int       flagBacks;
	mrcImage  Back;
	mrcImage* Backs;
	
	floatVector Value;
	floatVector Point;
	int         Symmetry;

	FILE*    fptOut;

	int      flagCorrelation;
	mrcImage correlation;

	int      flagFourier;
	mrcImage  fourier;

	int      flagTmap;
	mrcImage tmap;

	int      flagAvg;
	mrcImage avg;
	char*    avgName;
	DescartesCoord centre;
} lmrcImageSymmetryFindInfo;

/* struct end */
FileName:::: lmrcImageTransformDescartesIntoPolar.h
typedef struct lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo {
	int nFold;
	double minx;
	double maxx;
	double delx;
	double miny;
	double maxy;
	double dely;
	double minz;
	double maxz;
	double delz;
	double delPHI;
} lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo;

typedef struct lmrcImageTransformDescartesIntoPolarInfo {
	double dr;        /* Angstrom */ 
	double dphi;      /* Radian */
	double dtheta;    /* Radian */ 
	int    flagImageCentreIsGravityCentre;
	int    flagDescartesIntoPolarInfo; 
	int    flagrWeight; 

	/* RotationalSymmetry */
	int    flagRotationalSymmetry;
	int    nRotationalSymmetry;
	lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo axisInfo;

	int    flagCentre;
	mrcImageParaTypeRealCoord Centre;
}  lmrcImageTransformDescartesIntoPolarInfo;

/* struct end */
FileName:::: lmrcImageWindowing.h
typedef struct lmrcImageWindowingInfo {
	long  flagWy;
	float Wy;

	long flagWx;
	float Wx;

} lmrcImageWindowingInfo;
/* struct end */
FileName:::: lmrcImagesStatDataGet.h
typedef struct lmrcImagesStatDataGetInfo {
	int      numImage;

	int 	 flagAvg;
	mrcImage Avg;
	int 	 flagSQRAvg;
	mrcImage SQRAvg;
	int      flagVar;
	mrcImage Var;
	int      flagSD;
	mrcImage SD;
	int      flagSN;
	mrcImage SN;
	int      flagSE;
	mrcImage SE;
	int      flagt;
	mrcImage t;
} lmrcImagesStatDataGetInfo;
/* struct end */
FileName:::: mrcRefUtil.h
typedef double mrcRefDegCoordinate; 

typedef struct {
  mrcRefDegCoordinate ip;
  mrcRefDegCoordinate iw;
  mrcRefDegCoordinate ia;
  mrcRefDegCoordinate dp;
  mrcRefDegCoordinate dw;
  mrcRefDegCoordinate da;
  mrcRefDegCoordinate wp;
  mrcRefDegCoordinate ww;
  mrcRefDegCoordinate wa;
} mrcRefHeader;

typedef struct {
  mrcRefDegCoordinate ip;
  mrcRefDegCoordinate iw;
  mrcRefDegCoordinate ia;
  mrcRefDegCoordinate dp;
  mrcRefDegCoordinate dw;
  mrcRefDegCoordinate da;
  mrcRefDegCoordinate wp;
  mrcRefDegCoordinate ww;
  mrcRefDegCoordinate wa;
  int mode;
} mrcRefCorHeader;

#define mrcRefHeaderNumber 9;

typedef struct {
  mrcRefDegCoordinate ip;
  mrcRefDegCoordinate iw;
  mrcRefDegCoordinate ia;
  mrcRefDegCoordinate dp;
  mrcRefDegCoordinate dw;
  mrcRefDegCoordinate da;
  mrcRefDegCoordinate wp;
  mrcRefDegCoordinate ww;
  mrcRefDegCoordinate wa;
  double sy;
  double ey;
  double refsize;
  int inverse;
} mrcpwzCorHeader;

/* struct end */
FileName:::: lmrcFFTInfo.h

typedef struct mrcFSInfo {
	double F00;	
	double Max;
	double MaxExceptForF00;
} mrcFSInfo;

FileName:::: lmrcImageBinalization.h

typedef struct lmrcImageBinalizationInfo {
	double thresHold;	
	double value;	
	int flagNear;
	double near; /* pixel unit */	
}lmrcImageBinalizationInfo;

FileName:::: lmrcImageCTFDetermination.h
typedef struct lmrcImageCTFDeterminationInfo {
	ctfInfo val;
	ctfInfo min;
	ctfInfo max;
	ctfInfo del;
	mrcImageParaTypeReal Rmax;
	mrcImageParaTypeReal Rmin;
	mrcImage Dif;
	double minResidual;
	double minDef;
	double minRatio;
	FILE*   Out;
	int flagOutF;
	mrcImage resFFT;
} lmrcImageCTFDeterminationInfo;

typedef struct lmrcImageCTFDeterminationInfoMode {
	long FilterType;
	long WeightType;
	long SumType;
	long CTFInfoType;
} lmrcImageCTFDeterminationInfoMode;

typedef struct lmrcImageCTFDeterminationInfoRef {
	FILE* fptIn;
	char* In;
	FILE* fptRef;
	char* Ref;
	FILE* fptOut;
	char* Out;
	char MrcOut[100];
	mrcImage* in;
	mrcImage* out;
	long Width;
	float PixelSize;
	float truePitch;
	float firstDf;
	float withinDf;
	float firstAoverP;
	float withinAoverP;
	mrcImageParaTypeReal maxiter;
	mrcImageParaTypeReal iter;
} lmrcImageCTFDeterminationInfoRef;

FileName:::: lmrcImageCentre.h

typedef struct lmrcImageCenterOfMass {
  float x;
  float y;
  float z;
} lmrcImageCenterOfMass;

FileName:::: lmrcImageCommonLine.h

typedef enum lmrcImageCommonLineMode {
	lmrcImageCommonLineModeImageCenterIsGC = 1
} lmrcImageCommonLineMode;


typedef enum lmrcImageCommonLineSearchMode {
	lmrcImageCommonLineSearchModeFourierSpace = 0,
	lmrcImageCommonLineSearchModeRealSpace = 1 
} lmrcImageCommonLineSearchMode;

typedef struct lmrcImageCommonLineInfo {
	/* Input */
	double dtheta;
	lmrcImageCommonLineSearchMode searchMode; 
	/* Output */
	double optimumThetaIn;
	double optimumThetaRef;
	double optimumCor; 
} lmrcImageCommonLineInfo;

FileName:::: lmrcImageConnection.h
typedef struct lmrcImageConnectionInfo {
	long mode;
} lmrcImageConnectionInfo;
FileName:::: lmrcImageContourSurface.h
typedef struct lmrcImageContourSurfaceInfo {
	mrcImageParaTypeReal Contour;
} lmrcImageContourSurfaceInfo;

typedef enum lmrcImageContourSurfaceMode {
	lmrcImageContourSurfaceModeSimple=0
} lmrcImageContourSurfaceMode;
FileName:::: lmrcImageCorrelation.h
typedef struct lmrcImageAutoRotationCorrelationInfo {
	int iter; /* iteration */
	int nRot; /* Rotation */  
	int Method;
	float max;
	float maxTheta;
	mrcImageParaTypeRealCoord maxP;
	mrcImageInformation corInfo;
	lmrcImageSSDAInfo SSDAInfo;
	float EuclidDistance; 
	float LinearCorrelation;

	/* Restriction Rotation Area */
	int   flagRestrictionArea;
	float thetaMin;
	float thetaMax;

	int   flagXshiftOnly;
} lmrcImageAutoRotationCorrelationInfo;

typedef struct lmrcImageCorrelationRefinementInfo {
	mrcImageParaTypeRealCoord shift; 
	mrcImageParaTypeRealCoord step; 
	mrcImageParaTypeRealCoord range; 
	mrcImageInformation corInfo;
	int mode;
} lmrcImageCorrelationRefinementInfo;

FileName:::: lmrcImageCrystalCreate.h
typedef struct lmrcImageCrystalCreateInfo {
	long nx;
	long ny;
	long nz;
} lmrcImageCrystalCreateInfo;
FileName:::: lmrcImageDensity.h
typedef struct lmrcImageDensityInfoInfo {
	floatVector percentageVolume;
	mrcImageParaTypeRealCoord centreOfGravity;
	mrcImageParaTypeRealCoord centreOfGravitySD;
	mrcImageParaTypeRealCoord max;
	mrcImageParaTypeRealCoord maxSD;
	double                    deltaVolume; 
	mrcImage in;
} lmrcImageDensityInfoInfo;

typedef enum lmrcImageDensityInfoMode {
	mrcImageDensityInfoPercentageVolume  =1,
	mrcImageDensityInfoCentreOfGravity   =2,
	mrcImageDensityInfoMax               =4,
	mrcImageDensityInfoCentreOfGravitySD =8,
	mrcImageDensityInfoMaxSD             =16
} lmrcImageDensityInfoMode;

typedef struct lmrcImageDensityChangeEsitmationInfo0 {
	mrcImageParaTypeRealCoord change;
	mrcImageParaTypeRealCoord changeSD;
	double                    delta;
	double                    deltaSD;
	double                    deltaXY;
	double                    deltaXYSD;
} lmrcImageDensityChangeEstimationInfo0;

typedef struct lmrcImageDensityChangeEsitmationInfo {
	lmrcImageDensityChangeEstimationInfo0 CG;
	lmrcImageDensityChangeEstimationInfo0 Max;
	mrcImage in1;
	mrcImage in2;
} lmrcImageDensityChangeEstimationInfo;

typedef enum lmrcImageDensityChangeEstimationMode {
	mrcImageDensityChangeEstimationCentreOfGravity   =2,
	mrcImageDensityChangeEstimationMax               =4,
	mrcImageDensityChangeEstimationCentreOfGravitySD =8,
	mrcImageDensityChangeEstimationMaxSD             =16
} lmrcImageDensityChageEstimationMode;

FileName:::: lmrcImageDensityNormalizationByImage.h
typedef struct lmrcImageDenstiyNormalizationByImageInfo {
  /* Input */
  double sigma;

  /* Region Information */
  int flagCylinder;	
  float centerx, centery;
  float minr, maxr;
  /* Fitting Mode */
  int fitMode;
  float tstBGMin;
  float tstBGMax;
  float tstBGDelta;

  /* Output */
  float a;
  float b;
  float sigma_a;
  float sigma_b;
  float chi2;
  float q;
  float r;

  float refBG;
  float tstBG;
  float	chi2Signal;
  float chi2BG;
  int nData;
  float* testData;
  float* refData; 
} lmrcImageDensityNormalizationByImageInfo;


/*
   minimization of (in1 - (a+b*in2))^2
   out = a + b*in2
*/

typedef enum lmrcImageDensityNormalizationByImageMode {
  lmrcImageDensityNormalizationByImageModeSigma   = 1,
  lmrcImageDensityNormalizationByImageModeStdout  = 2,
  lmrcImageDensityNormalizationByImageModeReverse = 4,
  lmrcImageDensityNormalizationByImageModeRobust  = 8
} lmrcImageDensityNormalizationByImageMode; 

typedef enum lmrcImageDensityNormalizationByImageFitMode {
  lmrcImageDensityNormalizationByImageFitModeSingleLine = 0,
  lmrcImageDensityNormalizationByImageFitModeSingleLineWithBackground = 1 
} lmrcImageDensityNormalizationByImageFitMode;

FileName:::: lmrcImageEdgeAverage.h
typedef struct lmrcImageEdgeAverageInfo {
	/* In */
	mrcImageParaTypeInteger devide; 
	mrcImageParaTypeInteger width;
	/* Out */
	mrcImageParaTypeReal*   avg[4];
	mrcImageParaTypeReal*   count[4];
} lmrcImageEdgeAverageInfo;
FileName:::: lmrcImageFilterCreate.h
typedef enum lmrcImageFilterCreateMode {
	lmrcImageFilterModeSquare=0,
	lmrcImageFilterModeCircle=1
} lmrcImageFilterCreateMode;

typedef struct lmrcImageFilterCreateInfo {
	mrcImageParaTypeInteger    np;
	mrcImageParaTypeRealCoord* p;
	mrcImageParaTypeReal*      weight;

	mrcImageParaTypeIntegerCoord N;

	mrcImageParaTypeIntegerCoord Size;

	lmrcImageFilterCreateMode shape;
	long                      outputMode;
} lmrcImageFilterCreateInfo;
FileName:::: lmrcImageFirstNoiseReductionByRelaxation.h
typedef struct lmrcImageNoiseReductionByRelaxationInfo {
  /* input */
  /* OR Output */
  double SD;
  double datamax;
  double datamin;
  long classNumber;
  int ddimx; 
  int ddimy;
  int ddimz;
} lmrcImageNoiseReductionByRelaxationInfo;

typedef enum lmrcImageNoiseReductionByRelaxationMode {
  lmrcImageNoiseReductionByRelaxationModeSigma = 1,
} lmrcImageNoiseReductionByRelaxationMode; 
FileName:::: lmrcImageMasking.h
typedef enum lmrcImageMaskingInfoShape {
	lmrcImageMaskingInfoShapeCircle=0,
	lmrcImageMaskingInfoSquare=0
} lmrcImageMaskingInfoShape;

typedef struct lmrcImageMaskingInfo {
        mrcImageParaTypeRealCoord n;
        mrcImageParaTypeRealCoord c;
       	lmrcImageMaskingInfoShape 	 shape;
        long mode;
} lmrcImageMaskingInfo;
FileName:::: lmrcImageModelCreate.h
typedef struct _lmrcImageModelCreateMode1Info {
	float radius;
	float nHelix;
	float zPitch;
	float phiAngle;
	float deltaPhi;
	float startZ;
	float endZ;
	float startPhi;
	int     flagIn;
	mrcImage*  in;
	mrcImageDataSetMode inMode;
	int 	fm;
	int 	units;
} _lmrcImageModelCreateMode1Info;
FileName:::: lmrcImageMontage.h
typedef struct lmrcImageMontageInfo {
	lmrcImagePadMode PadMode;
	lmrcImagePadInfo PadInfo;
	int nx;
	int ny;
	int                  flagMaxValue;
	mrcImageParaTypeReal MaxValue;	
	int                  flagValueAssignedToMax;
	mrcImageParaTypeReal ValueAssignedToMax;	

	int flagEdgeAverage;
	int EdgeAverageWindow;
	int flagNoAverage;
} lmrcImageMontageInfo;
FileName:::: lmrcImageMove.h
typedef enum lmrcImageMoveMode {
	lmrcImageMoveModePixelUnit=0
} lmrcImageMoveMode;
FileName:::: lmrcImageNormalizing.h
typedef float lmrcImageNormalizingParaTypeReal;
typedef enum lmrcImageNormalizingMode {
	lmrcImageNormalizingModeDoubleExponential=0,
	lmrcImageNormalizingModeMinMax=1,
	lmrcImageNormalizingModeUsingContour=2,
	lmrcImageNormalizingModeUsingContourWithSolventFlattening=3,
	lmrcImageNormalizingModeNoEstimation=4
} lmrcImageNormalizingMode ;

typedef struct lmrcImageNormalizingInfo {
	lmrcImageNormalizingParaTypeReal A;
	lmrcImageNormalizingParaTypeReal B; /* A x + B */
	lmrcImageNormalizingParaTypeReal ContourMin;
	lmrcImageNormalizingParaTypeReal ContourMax;
	lmrcImageNormalizingParaTypeReal ContourSolvent;
	lmrcImageNormalizingMode Mode;
} lmrcImageNormalizingInfo;
FileName:::: lmrcImagePad.h
typedef struct lmrcImagePadInfo {
	mrcImageParaTypeInteger Width;
	mrcImageParaTypeInteger Height;
	mrcImageParaTypeReal Value;
	mrcImageParaTypeReal AWSize;
	mrcImageParaTypeReal AWMin;
	mrcImageParaTypeReal AWMax;
} lmrcImagePadInfo;

typedef enum lmrcImagePadMode {
	lmrcImagePadModeAverage                   = 0,
	lmrcImagePadModeAveragedYAxis             = 1,
	lmrcImagePadModeDynamicAveragedYAxis      = 2,
	lmrcImagePadModeAveragedEdge              = 3,
	lmrcImagePadModeBottomLeft                = 4,
	lmrcImagePadModeCenterWithoutAveraging    = 5,
	lmrcImagePadModeBottomLeftWithoutAveraging= 6,
	lmrcImagePadModeAveragedOutsideCircle     = 7,
	lmrcImagePadModeAveragedOutsideRing       = 8, 
	lmrcImagePadModeByValue                   = 9 
} lmrcImagePadMode;
FileName:::: lmrcImagePrint.h
typedef struct mrcImagePSFilePrintInfo  {
	mrcImageParaTypeReal scale;
	mrcImageParaTypeReal contourLineColorChange;
	mrcImageParaTypeReal contourLineWidthStart;
	mrcImageParaTypeReal contourLineWidthStep;
	long centre; /* 0: bottom right or 1:centre */	
	char whichSection; /* [x|y|z] */	
	double untwistAngle; /* untwist Image */
	psImageInfo psInfo;
	mrcImageParaTypeReal circleRadius;
} mrcImagePSFilePrintInfo;
FileName:::: lmrcImageProjection.h
typedef struct lmrcImageProjectionInfo{
	long mode;
	} lmrcImageProjectionInfo;
FileName:::: lmrcImageROI2D.h
typedef enum lmrcImageROIShape {
    Rect   =0,
    Rect2  =1,
    Circle =2,
	Line   =3
} lmrcImageROIShape;

typedef struct lmrcImageSingleROIInfo {
    char* FileName;
    lmrcImageROIShape Shape;
    float centerx;     /* For All Shape */
    float centery;     
    float blx;         /* For Rect, Rect2, Circle */
    float bly;
    float brx;
    float bry;
    float trx;
    float try;
    float tlx;
    float tly;
	float startx;      /* For Line */
	float starty;
	float endx; 
	float endy;

	/* For Post Modification */
    int flagWidth;     /* For Rect, Rect2, Circle, Line */
    float width;
    int flagHeight;    /* For Rect, Rect2, Circle */
    float height; 

    float radius;
    int mode;

	int flagRotation;
	float angle;

	int flagMagnifiedWidth;
	float magnifiedWidth;

	int flagMagnifiedHeight;
	float magnifiedHeight;

	/* For Layer Line Information */
	int flagLayerLine;
	float truePitch;
	float Ly;
	float dY;
} lmrcImageSingleROIInfo;

typedef struct lmrcImageROIsInfo {
    lmrcImageSingleROIInfo* ROI;
    int                numROI;
} lmrcImageROIsInfo;
FileName:::: lmrcImageROI3D.h
typedef struct lmrcImageROI3DInfo {
	mrcImageParaTypeReal z1;
	mrcImageParaTypeReal z2;
	int flagz; /* This is a dummy parameter the current version for the future */ 
	int flagx;
	mrcImageParaTypeReal x1;
	mrcImageParaTypeReal x2;
	int flagy;
	mrcImageParaTypeReal y1;
	mrcImageParaTypeReal y2;
} lmrcImageROI3DInfo;
FileName:::: lmrcImageRadialDistribution.h
typedef struct lmrcImageRadialDistributionInfo {
	float Cx;
	float Cy;
	int flagAverage;
} lmrcImageRadialDistributionInfo;
FileName:::: lmrcImageSSDA.h
typedef struct lmrcImageSSDAInfo {
	double Threshold; 	/* Threshold Level */
	double Error; 		/* Sum of residual differences at (x, y)*/
	mrcImageParaTypeRealCoord p; 		/* Lower Right Point Coordinate on Partial Image on the Input Image */
	mrcImageParaTypeRealCoord optimump; /* Optimum Point */
	mrcImageParaTypeRealCoord smin;     /* Search Area: Bottom Right */
	mrcImageParaTypeRealCoord smax; 	/* Search Area: Top Left */
	mrcImageParaTypeRealCoord predict;  /* Predictive Point */
	mrcImageParaTypeInteger n; 			/* Addition Times at (x, y)*/
} lmrcImageSSDAInfo;

FileName:::: lmrcImageSamplingUnitChange.h
typedef struct lmrcImageSamplingUnitChangeInfo {
	mrcImageParaTypeRealCoord    L;
	mrcImageParaTypeIntegerCoord N;
	mrcImageParaTypeInteger      SamplingMethodMode;
} lmrcImageSamplingUnitChangeInfo;
FileName:::: lmrcImageSecondNoiseReductionByRelaxation.h
typedef enum lmrcImageSecondNoiseReductionByRelaxationDijStyleMode1 {
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode1SavitzyGolay = 1
} lmrcImageSecondNoiseReductionByRelaxationDijStyleMode1;
  
typedef enum lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2 {
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2Rectangle = 1,
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2Circle = 2
} lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2;

typedef enum lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3 {
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3FiveTimesFive = 1,
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3SevenTimesSeven = 2
} lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3;
FileName:::: lmrcImageSinogram.h
typedef struct lmrcImageSinogramInfo {
	double dphi;
	int correlationMode;
} lmrcImageSinogramInfo;
FileName:::: lmrcImageSolventFlattening.h
typedef struct lmrcImageSolventFlatteningInfo {
	double density;
	long flagdensity;
} lmrcImageSolventFlatteningInfo;
FileName:::: lmrcImageSphere.h
typedef struct lmrcImageSphereInfo {
		float size;
		float r;
		float w;
		long mode;
}lmrcImageSphereInfo;
FileName:::: lmrcImageSymmetryFind.h
typedef enum lmrcImageSymmetryFindCheckType {
	lmrcImageSymmetryFindCheckTypeCheckByAdd=1,
	lmrcImageSymmetryFindCheckTypeCheckByCorrelation=2,
	lmrcImageSymmetryFindCheckTypeCheckByFourier=4,
	lmrcImageSymmetryFindCheckTypeCheckByTTest=8,
	lmrcImageSymmetryFindCheckTypeCheckBySRP=16
} lmrcImageSymmetryFindCheckType;

typedef enum lmrcImageSymmetryFindCentreType {
	lmrcImageSymmetryFindCheckTypeCentreGC       = 0,
	lmrcImageSymmetryFindCheckTypeCentreSymmetry = 1 
} lmrcImageSymmetryFindCentreType;

typedef enum lmrcImageSymmetryFindSubtractionType {
	lmrcImageSymmetryFindCheckTypeNoSubtraction   = 0,
	lmrcImageSymmetryFindCheckTypeMeanSubtraction = 1,
	lmrcImageSymmetryFindCheckTypeMinSubtraction  = 2 
} lmrcImageSymmetryFindSubtractionType;

typedef struct lmrcImageSymmetryFindInfo {
	double dr;
	double dtheta;
	double threshold1;
	double threshold2;
	int    maxNfold;

	/* Centre */
	lmrcImageSymmetryFindCentreType centreMode;
	lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo centreInfo;

	lmrcImageSymmetryFindSubtractionType subtractionMode; /* Subtraction Mode */
	int       flagImages;
	mrcImage  Image;
	mrcImage* Images;
	int       flagBacks;
	mrcImage  Back;
	mrcImage* Backs;
	
	floatVector Value;
	floatVector Point;
	int         Symmetry;

	FILE*    fptOut;

	int      flagCorrelation;
	mrcImage correlation;

	int      flagFourier;
	mrcImage  fourier;

	int      flagTmap;
	mrcImage tmap;

	int      flagAvg;
	mrcImage avg;
	char*    avgName;
	DescartesCoord centre;
} lmrcImageSymmetryFindInfo;

FileName:::: lmrcImageTransformDescartesIntoPolar.h
typedef struct lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo {
	int nFold;
	double minx;
	double maxx;
	double delx;
	double miny;
	double maxy;
	double dely;
	double minz;
	double maxz;
	double delz;
	double delPHI;
} lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo;

typedef struct lmrcImageTransformDescartesIntoPolarInfo {
	double dr;        /* Angstrom */ 
	double dphi;      /* Radian */
	double dtheta;    /* Radian */ 
	int    flagImageCentreIsGravityCentre;
	int    flagDescartesIntoPolarInfo; 
	int    flagrWeight; 

	/* RotationalSymmetry */
	int    flagRotationalSymmetry;
	int    nRotationalSymmetry;
	lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo axisInfo;

	int    flagCentre;
	mrcImageParaTypeRealCoord Centre;
}  lmrcImageTransformDescartesIntoPolarInfo;

FileName:::: lmrcImageWindowing.h
typedef struct lmrcImageWindowingInfo {
	long  flagWy;
	float Wy;

	long flagWx;
	float Wx;

} lmrcImageWindowingInfo;
FileName:::: lmrcImagesStatDataGet.h
typedef struct lmrcImagesStatDataGetInfo {
	int      numImage;

	int 	 flagAvg;
	mrcImage Avg;
	int 	 flagSQRAvg;
	mrcImage SQRAvg;
	int      flagVar;
	mrcImage Var;
	int      flagSD;
	mrcImage SD;
	int      flagSN;
	mrcImage SN;
	int      flagSE;
	mrcImage SE;
	int      flagt;
	mrcImage t;
} lmrcImagesStatDataGetInfo;
FileName:::: mrcRefUtil.h
typedef double mrcRefDegCoordinate; 

typedef struct {
  mrcRefDegCoordinate ip;
  mrcRefDegCoordinate iw;
  mrcRefDegCoordinate ia;
  mrcRefDegCoordinate dp;
  mrcRefDegCoordinate dw;
  mrcRefDegCoordinate da;
  mrcRefDegCoordinate wp;
  mrcRefDegCoordinate ww;
  mrcRefDegCoordinate wa;
} mrcRefHeader;

typedef struct {
  mrcRefDegCoordinate ip;
  mrcRefDegCoordinate iw;
  mrcRefDegCoordinate ia;
  mrcRefDegCoordinate dp;
  mrcRefDegCoordinate dw;
  mrcRefDegCoordinate da;
  mrcRefDegCoordinate wp;
  mrcRefDegCoordinate ww;
  mrcRefDegCoordinate wa;
  int mode;
} mrcRefCorHeader;

#define mrcRefHeaderNumber 9;

typedef struct {
  mrcRefDegCoordinate ip;
  mrcRefDegCoordinate iw;
  mrcRefDegCoordinate ia;
  mrcRefDegCoordinate dp;
  mrcRefDegCoordinate dw;
  mrcRefDegCoordinate da;
  mrcRefDegCoordinate wp;
  mrcRefDegCoordinate ww;
  mrcRefDegCoordinate wa;
  double sy;
  double ey;
  double refsize;
  int inverse;
} mrcpwzCorHeader;

FileName:::: lmrcFFTInfo.h

typedef struct mrcFSInfo {
	double F00;	
	double Max;
	double MaxExceptForF00;
} mrcFSInfo;

FileName:::: lmrcImageBinalization.h

typedef struct lmrcImageBinalizationInfo {
	double thresHold;	
	double value;	
	int flagNear;
	double near; /* pixel unit */	
}lmrcImageBinalizationInfo;

FileName:::: lmrcImageCTFDetermination.h
typedef struct lmrcImageCTFDeterminationInfo {
	ctfInfo val;
	ctfInfo min;
	ctfInfo max;
	ctfInfo del;
	mrcImageParaTypeReal Rmax;
	mrcImageParaTypeReal Rmin;
	mrcImage Dif;
	double minResidual;
	double minDef;
	double minRatio;
	FILE*   Out;
	int flagOutF;
	mrcImage resFFT;
} lmrcImageCTFDeterminationInfo;

typedef struct lmrcImageCTFDeterminationInfoMode {
	long FilterType;
	long WeightType;
	long SumType;
	long CTFInfoType;
} lmrcImageCTFDeterminationInfoMode;

typedef struct lmrcImageCTFDeterminationInfoRef {
	FILE* fptIn;
	char* In;
	FILE* fptRef;
	char* Ref;
	FILE* fptOut;
	char* Out;
	char MrcOut[100];
	mrcImage* in;
	mrcImage* out;
	long Width;
	float PixelSize;
	float truePitch;
	float firstDf;
	float withinDf;
	float firstAoverP;
	float withinAoverP;
	mrcImageParaTypeReal maxiter;
	mrcImageParaTypeReal iter;
} lmrcImageCTFDeterminationInfoRef;

FileName:::: lmrcImageCentre.h

typedef struct lmrcImageCenterOfMass {
  float x;
  float y;
  float z;
} lmrcImageCenterOfMass;

FileName:::: lmrcImageCommonLine.h

typedef enum lmrcImageCommonLineMode {
	lmrcImageCommonLineModeImageCenterIsGC = 1
} lmrcImageCommonLineMode;


typedef enum lmrcImageCommonLineSearchMode {
	lmrcImageCommonLineSearchModeFourierSpace = 0,
	lmrcImageCommonLineSearchModeRealSpace = 1 
} lmrcImageCommonLineSearchMode;

typedef struct lmrcImageCommonLineInfo {
	/* Input */
	double dtheta;
	lmrcImageCommonLineSearchMode searchMode; 
	/* Output */
	double optimumThetaIn;
	double optimumThetaRef;
	double optimumCor; 
} lmrcImageCommonLineInfo;

FileName:::: lmrcImageConnection.h
typedef struct lmrcImageConnectionInfo {
	long mode;
} lmrcImageConnectionInfo;
FileName:::: lmrcImageContourSurface.h
typedef struct lmrcImageContourSurfaceInfo {
	mrcImageParaTypeReal Contour;
} lmrcImageContourSurfaceInfo;

typedef enum lmrcImageContourSurfaceMode {
	lmrcImageContourSurfaceModeSimple=0
} lmrcImageContourSurfaceMode;
FileName:::: lmrcImageCorrelation.h
typedef struct lmrcImageAutoRotationCorrelationInfo {
	int iter; /* iteration */
	int nRot; /* Rotation */  
	int Method;
	float max;
	float maxTheta;
	mrcImageParaTypeRealCoord maxP;
	mrcImageInformation corInfo;
	lmrcImageSSDAInfo SSDAInfo;
	float EuclidDistance; 
	float LinearCorrelation;

	/* Restriction Rotation Area */
	int   flagRestrictionArea;
	float thetaMin;
	float thetaMax;

	int   flagXshiftOnly;
} lmrcImageAutoRotationCorrelationInfo;

typedef struct lmrcImageCorrelationRefinementInfo {
	mrcImageParaTypeRealCoord shift; 
	mrcImageParaTypeRealCoord step; 
	mrcImageParaTypeRealCoord range; 
	mrcImageInformation corInfo;
	int mode;
} lmrcImageCorrelationRefinementInfo;

FileName:::: lmrcImageCrystalCreate.h
typedef struct lmrcImageCrystalCreateInfo {
	long nx;
	long ny;
	long nz;
} lmrcImageCrystalCreateInfo;
FileName:::: lmrcImageDensity.h
typedef struct lmrcImageDensityInfoInfo {
	floatVector percentageVolume;
	mrcImageParaTypeRealCoord centreOfGravity;
	mrcImageParaTypeRealCoord centreOfGravitySD;
	mrcImageParaTypeRealCoord max;
	mrcImageParaTypeRealCoord maxSD;
	double                    deltaVolume; 
	mrcImage in;
} lmrcImageDensityInfoInfo;

typedef enum lmrcImageDensityInfoMode {
	mrcImageDensityInfoPercentageVolume  =1,
	mrcImageDensityInfoCentreOfGravity   =2,
	mrcImageDensityInfoMax               =4,
	mrcImageDensityInfoCentreOfGravitySD =8,
	mrcImageDensityInfoMaxSD             =16
} lmrcImageDensityInfoMode;

typedef struct lmrcImageDensityChangeEsitmationInfo0 {
	mrcImageParaTypeRealCoord change;
	mrcImageParaTypeRealCoord changeSD;
	double                    delta;
	double                    deltaSD;
	double                    deltaXY;
	double                    deltaXYSD;
} lmrcImageDensityChangeEstimationInfo0;

typedef struct lmrcImageDensityChangeEsitmationInfo {
	lmrcImageDensityChangeEstimationInfo0 CG;
	lmrcImageDensityChangeEstimationInfo0 Max;
	mrcImage in1;
	mrcImage in2;
} lmrcImageDensityChangeEstimationInfo;

typedef enum lmrcImageDensityChangeEstimationMode {
	mrcImageDensityChangeEstimationCentreOfGravity   =2,
	mrcImageDensityChangeEstimationMax               =4,
	mrcImageDensityChangeEstimationCentreOfGravitySD =8,
	mrcImageDensityChangeEstimationMaxSD             =16
} lmrcImageDensityChageEstimationMode;

FileName:::: lmrcImageDensityNormalizationByImage.h
typedef struct lmrcImageDenstiyNormalizationByImageInfo {
  /* Input */
  double sigma;

  /* Region Information */
  int flagCylinder;	
  float centerx, centery;
  float minr, maxr;
  /* Fitting Mode */
  int fitMode;
  float tstBGMin;
  float tstBGMax;
  float tstBGDelta;

  /* Output */
  float a;
  float b;
  float sigma_a;
  float sigma_b;
  float chi2;
  float q;
  float r;

  float refBG;
  float tstBG;
  float	chi2Signal;
  float chi2BG;
  int nData;
  float* testData;
  float* refData; 
} lmrcImageDensityNormalizationByImageInfo;


/*
   minimization of (in1 - (a+b*in2))^2
   out = a + b*in2
*/

typedef enum lmrcImageDensityNormalizationByImageMode {
  lmrcImageDensityNormalizationByImageModeSigma   = 1,
  lmrcImageDensityNormalizationByImageModeStdout  = 2,
  lmrcImageDensityNormalizationByImageModeReverse = 4,
  lmrcImageDensityNormalizationByImageModeRobust  = 8
} lmrcImageDensityNormalizationByImageMode; 

typedef enum lmrcImageDensityNormalizationByImageFitMode {
  lmrcImageDensityNormalizationByImageFitModeSingleLine = 0,
  lmrcImageDensityNormalizationByImageFitModeSingleLineWithBackground = 1 
} lmrcImageDensityNormalizationByImageFitMode;

FileName:::: lmrcImageEdgeAverage.h
typedef struct lmrcImageEdgeAverageInfo {
	/* In */
	mrcImageParaTypeInteger devide; 
	mrcImageParaTypeInteger width;
	/* Out */
	mrcImageParaTypeReal*   avg[4];
	mrcImageParaTypeReal*   count[4];
} lmrcImageEdgeAverageInfo;
FileName:::: lmrcImageFilterCreate.h
typedef enum lmrcImageFilterCreateMode {
	lmrcImageFilterModeSquare=0,
	lmrcImageFilterModeCircle=1
} lmrcImageFilterCreateMode;

typedef struct lmrcImageFilterCreateInfo {
	mrcImageParaTypeInteger    np;
	mrcImageParaTypeRealCoord* p;
	mrcImageParaTypeReal*      weight;

	mrcImageParaTypeIntegerCoord N;

	mrcImageParaTypeIntegerCoord Size;

	lmrcImageFilterCreateMode shape;
	long                      outputMode;
} lmrcImageFilterCreateInfo;
FileName:::: lmrcImageFirstNoiseReductionByRelaxation.h
typedef struct lmrcImageNoiseReductionByRelaxationInfo {
  /* input */
  /* OR Output */
  double SD;
  double datamax;
  double datamin;
  long classNumber;
  int ddimx; 
  int ddimy;
  int ddimz;
} lmrcImageNoiseReductionByRelaxationInfo;

typedef enum lmrcImageNoiseReductionByRelaxationMode {
  lmrcImageNoiseReductionByRelaxationModeSigma = 1,
} lmrcImageNoiseReductionByRelaxationMode; 
FileName:::: lmrcImageMasking.h
typedef enum lmrcImageMaskingInfoShape {
	lmrcImageMaskingInfoShapeCircle=0,
	lmrcImageMaskingInfoSquare=0
} lmrcImageMaskingInfoShape;

typedef struct lmrcImageMaskingInfo {
        mrcImageParaTypeRealCoord n;
        mrcImageParaTypeRealCoord c;
       	lmrcImageMaskingInfoShape 	 shape;
        long mode;
} lmrcImageMaskingInfo;
FileName:::: lmrcImageModelCreate.h
typedef struct _lmrcImageModelCreateMode1Info {
	float radius;
	float nHelix;
	float zPitch;
	float phiAngle;
	float deltaPhi;
	float startZ;
	float endZ;
	float startPhi;
	int     flagIn;
	mrcImage*  in;
	mrcImageDataSetMode inMode;
	int 	fm;
	int 	units;
} _lmrcImageModelCreateMode1Info;
FileName:::: lmrcImageMontage.h
typedef struct lmrcImageMontageInfo {
	lmrcImagePadMode PadMode;
	lmrcImagePadInfo PadInfo;
	int nx;
	int ny;
	int                  flagMaxValue;
	mrcImageParaTypeReal MaxValue;	
	int                  flagValueAssignedToMax;
	mrcImageParaTypeReal ValueAssignedToMax;	

	int flagEdgeAverage;
	int EdgeAverageWindow;
	int flagNoAverage;
} lmrcImageMontageInfo;
FileName:::: lmrcImageMove.h
typedef enum lmrcImageMoveMode {
	lmrcImageMoveModePixelUnit=0
} lmrcImageMoveMode;
FileName:::: lmrcImageNormalizing.h
typedef float lmrcImageNormalizingParaTypeReal;
typedef enum lmrcImageNormalizingMode {
	lmrcImageNormalizingModeDoubleExponential=0,
	lmrcImageNormalizingModeMinMax=1,
	lmrcImageNormalizingModeUsingContour=2,
	lmrcImageNormalizingModeUsingContourWithSolventFlattening=3,
	lmrcImageNormalizingModeNoEstimation=4
} lmrcImageNormalizingMode ;

typedef struct lmrcImageNormalizingInfo {
	lmrcImageNormalizingParaTypeReal A;
	lmrcImageNormalizingParaTypeReal B; /* A x + B */
	lmrcImageNormalizingParaTypeReal ContourMin;
	lmrcImageNormalizingParaTypeReal ContourMax;
	lmrcImageNormalizingParaTypeReal ContourSolvent;
	lmrcImageNormalizingMode Mode;
} lmrcImageNormalizingInfo;
FileName:::: lmrcImagePad.h
typedef struct lmrcImagePadInfo {
	mrcImageParaTypeInteger Width;
	mrcImageParaTypeInteger Height;
	mrcImageParaTypeReal Value;
	mrcImageParaTypeReal AWSize;
	mrcImageParaTypeReal AWMin;
	mrcImageParaTypeReal AWMax;
} lmrcImagePadInfo;

typedef enum lmrcImagePadMode {
	lmrcImagePadModeAverage                   = 0,
	lmrcImagePadModeAveragedYAxis             = 1,
	lmrcImagePadModeDynamicAveragedYAxis      = 2,
	lmrcImagePadModeAveragedEdge              = 3,
	lmrcImagePadModeBottomLeft                = 4,
	lmrcImagePadModeCenterWithoutAveraging    = 5,
	lmrcImagePadModeBottomLeftWithoutAveraging= 6,
	lmrcImagePadModeAveragedOutsideCircle     = 7,
	lmrcImagePadModeAveragedOutsideRing       = 8, 
	lmrcImagePadModeByValue                   = 9 
} lmrcImagePadMode;
FileName:::: lmrcImagePrint.h
typedef struct mrcImagePSFilePrintInfo  {
	mrcImageParaTypeReal scale;
	mrcImageParaTypeReal contourLineColorChange;
	mrcImageParaTypeReal contourLineWidthStart;
	mrcImageParaTypeReal contourLineWidthStep;
	long centre; /* 0: bottom right or 1:centre */	
	char whichSection; /* [x|y|z] */	
	double untwistAngle; /* untwist Image */
	psImageInfo psInfo;
	mrcImageParaTypeReal circleRadius;
} mrcImagePSFilePrintInfo;
FileName:::: lmrcImageProjection.h
typedef struct lmrcImageProjectionInfo{
	long mode;
	} lmrcImageProjectionInfo;
FileName:::: lmrcImageROI2D.h
typedef enum lmrcImageROIShape {
    Rect   =0,
    Rect2  =1,
    Circle =2,
	Line   =3
} lmrcImageROIShape;

typedef struct lmrcImageSingleROIInfo {
    char* FileName;
    lmrcImageROIShape Shape;
    float centerx;     /* For All Shape */
    float centery;     
    float blx;         /* For Rect, Rect2, Circle */
    float bly;
    float brx;
    float bry;
    float trx;
    float try;
    float tlx;
    float tly;
	float startx;      /* For Line */
	float starty;
	float endx; 
	float endy;

	/* For Post Modification */
    int flagWidth;     /* For Rect, Rect2, Circle, Line */
    float width;
    int flagHeight;    /* For Rect, Rect2, Circle */
    float height; 

    float radius;
    int mode;

	int flagRotation;
	float angle;

	int flagMagnifiedWidth;
	float magnifiedWidth;

	int flagMagnifiedHeight;
	float magnifiedHeight;

	/* For Layer Line Information */
	int flagLayerLine;
	float truePitch;
	float Ly;
	float dY;
} lmrcImageSingleROIInfo;

typedef struct lmrcImageROIsInfo {
    lmrcImageSingleROIInfo* ROI;
    int                numROI;
} lmrcImageROIsInfo;
FileName:::: lmrcImageROI3D.h
typedef struct lmrcImageROI3DInfo {
	mrcImageParaTypeReal z1;
	mrcImageParaTypeReal z2;
	int flagz; /* This is a dummy parameter the current version for the future */ 
	int flagx;
	mrcImageParaTypeReal x1;
	mrcImageParaTypeReal x2;
	int flagy;
	mrcImageParaTypeReal y1;
	mrcImageParaTypeReal y2;
} lmrcImageROI3DInfo;
FileName:::: lmrcImageRadialDistribution.h
typedef struct lmrcImageRadialDistributionInfo {
	float Cx;
	float Cy;
	int flagAverage;
} lmrcImageRadialDistributionInfo;
FileName:::: lmrcImageSSDA.h
typedef struct lmrcImageSSDAInfo {
	double Threshold; 	/* Threshold Level */
	double Error; 		/* Sum of residual differences at (x, y)*/
	mrcImageParaTypeRealCoord p; 		/* Lower Right Point Coordinate on Partial Image on the Input Image */
	mrcImageParaTypeRealCoord optimump; /* Optimum Point */
	mrcImageParaTypeRealCoord smin;     /* Search Area: Bottom Right */
	mrcImageParaTypeRealCoord smax; 	/* Search Area: Top Left */
	mrcImageParaTypeRealCoord predict;  /* Predictive Point */
	mrcImageParaTypeInteger n; 			/* Addition Times at (x, y)*/
} lmrcImageSSDAInfo;

FileName:::: lmrcImageSamplingUnitChange.h
typedef struct lmrcImageSamplingUnitChangeInfo {
	mrcImageParaTypeRealCoord    L;
	mrcImageParaTypeIntegerCoord N;
	mrcImageParaTypeInteger      SamplingMethodMode;
} lmrcImageSamplingUnitChangeInfo;
FileName:::: lmrcImageSecondNoiseReductionByRelaxation.h
typedef enum lmrcImageSecondNoiseReductionByRelaxationDijStyleMode1 {
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode1SavitzyGolay = 1
} lmrcImageSecondNoiseReductionByRelaxationDijStyleMode1;
  
typedef enum lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2 {
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2Rectangle = 1,
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2Circle = 2
} lmrcImageSecondNoiseReductionByRelaxationDijStyleMode2;

typedef enum lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3 {
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3FiveTimesFive = 1,
  lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3SevenTimesSeven = 2
} lmrcImageSecondNoiseReductionByRelaxationDijStyleMode3;
FileName:::: lmrcImageSinogram.h
typedef struct lmrcImageSinogramInfo {
	double dphi;
	int correlationMode;
} lmrcImageSinogramInfo;
FileName:::: lmrcImageSolventFlattening.h
typedef struct lmrcImageSolventFlatteningInfo {
	double density;
	long flagdensity;
} lmrcImageSolventFlatteningInfo;
FileName:::: lmrcImageSphere.h
typedef struct lmrcImageSphereInfo {
		float size;
		float r;
		float w;
		long mode;
}lmrcImageSphereInfo;
FileName:::: lmrcImageSymmetryFind.h
typedef enum lmrcImageSymmetryFindCheckType {
	lmrcImageSymmetryFindCheckTypeCheckByAdd=1,
	lmrcImageSymmetryFindCheckTypeCheckByCorrelation=2,
	lmrcImageSymmetryFindCheckTypeCheckByFourier=4,
	lmrcImageSymmetryFindCheckTypeCheckByTTest=8,
	lmrcImageSymmetryFindCheckTypeCheckBySRP=16
} lmrcImageSymmetryFindCheckType;

typedef enum lmrcImageSymmetryFindCentreType {
	lmrcImageSymmetryFindCheckTypeCentreGC       = 0,
	lmrcImageSymmetryFindCheckTypeCentreSymmetry = 1 
} lmrcImageSymmetryFindCentreType;

typedef enum lmrcImageSymmetryFindSubtractionType {
	lmrcImageSymmetryFindCheckTypeNoSubtraction   = 0,
	lmrcImageSymmetryFindCheckTypeMeanSubtraction = 1,
	lmrcImageSymmetryFindCheckTypeMinSubtraction  = 2 
} lmrcImageSymmetryFindSubtractionType;

typedef struct lmrcImageSymmetryFindInfo {
	double dr;
	double dtheta;
	double threshold1;
	double threshold2;
	int    maxNfold;

	/* Centre */
	lmrcImageSymmetryFindCentreType centreMode;
	lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo centreInfo;

	lmrcImageSymmetryFindSubtractionType subtractionMode; /* Subtraction Mode */
	int       flagImages;
	mrcImage  Image;
	mrcImage* Images;
	int       flagBacks;
	mrcImage  Back;
	mrcImage* Backs;
	
	floatVector Value;
	floatVector Point;
	int         Symmetry;

	FILE*    fptOut;

	int      flagCorrelation;
	mrcImage correlation;

	int      flagFourier;
	mrcImage  fourier;

	int      flagTmap;
	mrcImage tmap;

	int      flagAvg;
	mrcImage avg;
	char*    avgName;
	DescartesCoord centre;
} lmrcImageSymmetryFindInfo;

FileName:::: lmrcImageTransformDescartesIntoPolar.h
typedef struct lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo {
	int nFold;
	double minx;
	double maxx;
	double delx;
	double miny;
	double maxy;
	double dely;
	double minz;
	double maxz;
	double delz;
	double delPHI;
} lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo;

typedef struct lmrcImageTransformDescartesIntoPolarInfo {
	double dr;        /* Angstrom */ 
	double dphi;      /* Radian */
	double dtheta;    /* Radian */ 
	int    flagImageCentreIsGravityCentre;
	int    flagDescartesIntoPolarInfo; 
	int    flagrWeight; 

	/* RotationalSymmetry */
	int    flagRotationalSymmetry;
	int    nRotationalSymmetry;
	lmrcImageDeterminationOfPolarAxisByAssumingNfoldInfo axisInfo;

	int    flagCentre;
	mrcImageParaTypeRealCoord Centre;
}  lmrcImageTransformDescartesIntoPolarInfo;

FileName:::: lmrcImageWindowing.h
typedef struct lmrcImageWindowingInfo {
	long  flagWy;
	float Wy;

	long flagWx;
	float Wx;

} lmrcImageWindowingInfo;
FileName:::: lmrcImagesStatDataGet.h
typedef struct lmrcImagesStatDataGetInfo {
	int      numImage;

	int 	 flagAvg;
	mrcImage Avg;
	int 	 flagSQRAvg;
	mrcImage SQRAvg;
	int      flagVar;
	mrcImage Var;
	int      flagSD;
	mrcImage SD;
	int      flagSN;
	mrcImage SN;
	int      flagSE;
	mrcImage SE;
	int      flagt;
	mrcImage t;
} lmrcImagesStatDataGetInfo;
FileName:::: mrcRefUtil.h
typedef double mrcRefDegCoordinate; 

typedef struct {
  mrcRefDegCoordinate ip;
  mrcRefDegCoordinate iw;
  mrcRefDegCoordinate ia;
  mrcRefDegCoordinate dp;
  mrcRefDegCoordinate dw;
  mrcRefDegCoordinate da;
  mrcRefDegCoordinate wp;
  mrcRefDegCoordinate ww;
  mrcRefDegCoordinate wa;
} mrcRefHeader;

typedef struct {
  mrcRefDegCoordinate ip;
  mrcRefDegCoordinate iw;
  mrcRefDegCoordinate ia;
  mrcRefDegCoordinate dp;
  mrcRefDegCoordinate dw;
  mrcRefDegCoordinate da;
  mrcRefDegCoordinate wp;
  mrcRefDegCoordinate ww;
  mrcRefDegCoordinate wa;
  int mode;
} mrcRefCorHeader;

#define mrcRefHeaderNumber 9;

typedef struct {
  mrcRefDegCoordinate ip;
  mrcRefDegCoordinate iw;
  mrcRefDegCoordinate ia;
  mrcRefDegCoordinate dp;
  mrcRefDegCoordinate dw;
  mrcRefDegCoordinate da;
  mrcRefDegCoordinate wp;
  mrcRefDegCoordinate ww;
  mrcRefDegCoordinate wa;
  double sy;
  double ey;
  double refsize;
  int inverse;
} mrcpwzCorHeader;