Information from source codes
../src/lmrcImageMeanFreePath.c:
../src/lmrcImageShapeModePrint.c:
../src/lmrcImageShapeSearch.c:
mrcImageShape.h
/*
# mrcImageShape.h : $Revision$
# $Date$
# Created by $Author$
# Usage : mrcImageShape.h
# Attention
# $Loccker$
# $State$
#
*/
/* $Log$ */
#ifndef MRC_IMAGE_SHAPE_H
#define MRC_IMAGE_SHAPE_H
#include
#include "genUtil.h"
#include "Memory.h"
#include "Matrix3D.h"
#include "Vector.h"
#include "mrcImage.h"
#include "mrcImageShape.h"
#include "avsFile.h"
/* constant begin */
typedef enum lmrcImageShapeMode {
lmrcImageShapeModeNoShape=-1,
lmrcImageShapeModeSylinder=0,
lmrcImageShapeModeDisk=1,
lmrcImageShapeModeSphere=2,
lmrcImageShapeModeMax=3
} lmrcImageShapeMode;
typedef enum lmrcImageShapeContactMode {
lmrcImageShapeContactModeNoShape=-1,
lmrcImageShapeContactModeSylinderSylinder=0,
lmrcImageShapeContactModeMax=1
} lmrcImageShapeContactMode;
/* constant end */
/* struct begin */
typedef struct lmrcImageShapeSearchInfo {
float radius; // Sylinder, half disk, sphere
float minRadius;
float maxRadius;
float delRadius;
float length; // Sylinder
float minLength;
float maxLength;
float delLength;
float minTheta;
float maxTheta;
float delTheta;
float minPhi;
float maxPhi;
float delPhi;
float minPsi;
float maxPsi;
float delPsi;
int nCube;
int flagSmooth;
int radiusSmooth;
// temporary
float x;
float y;
float z;
int interpMode;
int thresZscore;
// Control
int flagRefine;
// Output
mrcImage average; // Average for all orientations
mrcImage SD; // SD for all
mrcImage Max; // Max for all
mrcImage Zscore; // Z-score;
mrcImage PCA; // PCA
mrcImage PCAaccuracy;
int nShapeInfo;
mrcImage* shapeInfo; // Shape, Orientation, ...
mrcImage shape; // Template Structure
// Direction
FILE* OutVectorBILD;
float ZoomVector;
float arrowr1;
float arrowr2;
float arrowrho;
float sylinderColor[3];
float diskColor[3];
int flagOutVectorMRC;
mrcImage OutVectorMRC[3];
avsFileField OutVectorFLD;
} lmrcImageShapeSearchInfo;
/* end */
#ifdef __cplusplus
extern "C" {
#endif
/* prototype begin */
extern void lmrcImageShapeModePrint(FILE* fpt);
extern void lmrcImageShapeSearch(mrcImage* out, mrcImage* in, lmrcImageShapeSearchInfo* linfo, int mode);
extern void lmrcImageShapeSearchCalc0(mrcImage* out, mrcImage* in, lmrcImageShapeSearchInfo* linfo, int mode);
extern void lmrcImageShapeSearchSylinder(double* data, mrcImage* in, Matrix3D mat, lmrcImageShapeSearchInfo* linfo, int mode);
extern void lmrcImageShapeSearchDisk(double* data, mrcImage* in, Matrix3D mat, lmrcImageShapeSearchInfo* linfo, int mode);
extern void lmrcImageShapeSearchSphere(double* data, mrcImage* in, Matrix3D mat, lmrcImageShapeSearchInfo* linfo, int mode);
extern void lmrcImageShapeSearchModePrint(FILE* fpt);
extern void lmrcImageShapeContactSearch(mrcImage* contact, lmrcImageShapeSearchInfo* linfo, mrcImage* in, int mode);
extern void lmrcImageShapeContactSearch0(mrcImage* contact, lmrcImageShapeSearchInfo* linfo, mrcImage* in, int mode);
/* prototype end */
#ifdef __cplusplus
};
#endif
#endif /* XXXX */