-/bin/bash: mrcImageAutoRotationCorrelation3D: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>mrcImageAutoRotationCorrelation3D</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageAutoRotationCorrelation3D</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageAutoRotationCorrelation3D
+Options:
+ [-i[nput] In (NULL )] :Essential :Input: mrc[test]
+ [-r[ef] Ref (NULL )] :Essential :Input: mrc[ref]
+ [-o[utput] Out (stdout )] :Optional :Output: Parameter
+ [-cor Cor (NULL )] :Optional :Output: CorMap
+ [-fit Fit (stdout )] :Optional :Output: Best Fit
+ [-E[uler]A[ngle] EulerAngle (YOYS )] :Optional :Input: EulerAngle
+ [-Rot1 Rot1Min (0.0 )Rot1Max (360.0 )Rot1Delta (5.0 )] :Optional :Rot1
+ [-Rot2 Rot2Min (0.0 )Rot2Max (180.0 )Rot2Delta (5.0 )] :Optional :Rot2
+ [-Rot3 Rot3Min (0.0 )Rot3Max (360.0 )Rot3Delta (5.0 )] :Optional :Rot3
+ [-Xrange XrangeMin (0 )XrangeMax (0 )] :Optional :Xrange[pixel]: Not set, all space search
+ [-Yrange YrangeMin (0 )YrangeMax (0 )] :Optional :Yrange[pixel]: Not set, all space search
+ [-Zrange ZrangeMin (0 )ZrangeMax (0 )] :Optional :Zrange[pixel]: Not set, all space search
+ [-M[ode] Mode (0 )] :Optional :Mode: Correlation Mode
+ [-M[ode]R[otation] ModeRotation (0 )] :Optional :Mode: Rotation3D Mode
+ [-c[onfig] configFile (NULL )] :Optional :ConfigurationFile
+ [-m[ode] mode (0 )] :Optional :Mode: InterpolationMode
+----- Additional Usage -----
+----- -M CorrelationMode -----
+0: Normal Correlation FxG*
+1: Phase Correlation FxG*/ |FxG*|
+2: Phase Correlation FxG*/sqrt(|FxG*|)
+3: Normalized Normal Correlation FxG*/|F||G|)
+16: (0,0) = 0
+Refinement Correlation Map
+0: sqrt(Sum |Fi-Gi|^2 / Sum |Gi|^2)
+1: Sum |Gi||phaseFi - phaseGi| / Sum |Gi|
+2: sqrt(Sum |Gi||phaseFi - phaseGi|^2 / Sum |Gi| )
+----- -MR RotationMode -----
+ 0: padding 0
+ 1: padding average
+ +0: within ellipsoidal area.
+ +16: within square area.
+</PRE>
+</BODY>
+</HTML>
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