Document Added

[eos/optional.git] / doc / SmallTools / mrcImageModelCreate.html

diff --git a/doc/SmallTools/mrcImageModelCreate.html b/doc/SmallTools/mrcImageModelCreate.html
index b32cb2b..08b2639 100644 (file)
--- a/doc/SmallTools/mrcImageModelCreate.html
+++ b/doc/SmallTools/mrcImageModelCreate.html
@@ -8,29 +8,33 @@
 <PRE>
 Usage: mrcImageModelCreate
 Options:
-    [-o[utput]           Out                 (NULL      )] :Essential :OutputDataFile
-    [-i[nput]            In                  (NULL      )] :Optional  :InputDataFile
-    [-nx                 nx                  (70        )] :Optional  :Real length = nx * lx
-    [-ny                 ny                  (70        )] :Optional  :Real length = ny * ly
-    [-nz                 nz                  (100       )] :Optional  :Real lenght = nz * lz
-    [-r                  r                   (1         )] :Optional  :Radius[pixel]
-    [-lx                 lx                  (5.0       )] :Optional  :Pixel Size[Angstrom]
-    [-ly                 ly                  (5.0       )] :Optional  :Pixel Size[Angstrom]
-    [-lz                 lz                  (5.0       )] :Optional  :Pixel Size[Angstrom]
-    [-radius             radius              (150       )] :Optional  :filament radius [A]
-    [-n                  nHelix              (3         )] :Optional  :n-helix
-    [-dz                 zPitch              (143       )] :Optional  :pitch [A]
-    [-dphi               deltaPhi            (40        )] :Optional  :rotation angle [degree]
-    [-phi                phiAngle            (120       )] :Optional  :rotation angle in the same level [degree]
-    [-sz                 startZ              (0         )] :Optional  :start z [A]
-    [-ez                 endZ                (500       )] :Optional  :end z [A]
-    [-sphi               startPhi            (0         )] :Optional  :start angle [degree]
-    [-sphi2              startPhi2           (40        )] :Optional  :start angle 2 [degree]
-    [-inMode             inMode              (0         )] :Optional  :inMode
-    [-units              units               (9         )] :Optional  :units number
-    [-fm                 fm                  (0         )] :Optional  :formation
-    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
-    [-m[ode]             mode                (0         )] :Optional  :Mode
+    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile
+    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Optional  :InputDataFile
+    [-nx                 nx                  (70        ).as(Integer             ) ] :Optional  :Real length = nx * lx
+    [-ny                 ny                  (70        ).as(Integer             ) ] :Optional  :Real length = ny * ly
+    [-nz                 nz                  (100       ).as(Integer             ) ] :Optional  :Real lenght = nz * lz
+    [-r                  r                   (1         ).as(Integer             ) ] :Optional  :Radius[pixel]
+    [-l                  l                   (1         ).as(Integer             ) ] :Optional  :Length[pixel]
+    [-lx                 lx                  (5.0       ).as(Real                ) ] :Optional  :Pixel Size[Angstrom]
+    [-ly                 ly                  (5.0       ).as(Real                ) ] :Optional  :Pixel Size[Angstrom]
+    [-lz                 lz                  (5.0       ).as(Real                ) ] :Optional  :Pixel Size[Angstrom]
+    [-radius             radius              (150       ).as(Real                ) ] :Optional  :filament radius [A]
+    [-n                  nHelix              (3         ).as(Integer             ) ] :Optional  :n-helix
+    [-dz                 zPitch              (143       ).as(Real                ) ] :Optional  :pitch [A]
+    [-dphi               deltaPhi            (40        ).as(Real                ) ] :Optional  :rotation angle [degree]
+    [-phi                phiAngle            (120       ).as(Real                ) ] :Optional  :rotation angle in the same level [degree]
+    [-sz                 startZ              (0         ).as(Real                ) ] :Optional  :start z [A]
+    [-ez                 endZ                (500       ).as(Real                ) ] :Optional  :end z [A]
+    [-sphi               startPhi            (0         ).as(Real                ) ] :Optional  :start angle [degree]
+    [-sphi2              startPhi2           (40        ).as(Real                ) ] :Optional  :start angle 2 [degree]
+    [-inMode             inMode              (0         ).as(Integer             ) ] :Optional  :inMode
+    [-units              units               (9         ).as(Integer             ) ] :Optional  :units number
+    [-fm                 fm                  (0         ).as(Integer             ) ] :Optional  :formation
+    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
+    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
+>>>> 
+-nx -ny -nz : image size[pixel]
+-lx -ly -lz : pixel/voxel size[Angstrom]
 >>>> Mode <<<< (-m)
 0: Circle(a right cylinder:3D) and Triangle(a trigonal prism:3D) 
        Optional argument : -nx -ny -nz -r  
@@ -79,6 +83,8 @@ Options:
        Optional argument : -nx -ny   
 7: SheppLogan 3D 
        Optional argument : -nx -ny -nz  
+8: Cylinder 3D 
+       Optional argument : -nx -ny -nz -r -l 
 </PRE>
 </BODY>
 </HTML>