Document Added

[eos/optional.git] / doc / SmallTools / mrcImageOrientationSearchBySimultaneousMinimization.html

diff --git a/doc/SmallTools/mrcImageOrientationSearchBySimultaneousMinimization.html b/doc/SmallTools/mrcImageOrientationSearchBySimultaneousMinimization.html
index c69489b..37fba60 100644 (file)
--- a/doc/SmallTools/mrcImageOrientationSearchBySimultaneousMinimization.html
+++ b/doc/SmallTools/mrcImageOrientationSearchBySimultaneousMinimization.html
@@ -8,27 +8,27 @@
 <PRE>
 Usage: mrcImageOrientationSearchBySimultaneousMinimization
 Options:
-    [-I[nputFileList]    In                  (NULL      )] :Essential :InputDataFileList
-    [-o[utput]           Out                 (NULL      )] :Essential :OutputDataFile
-    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
-    [-m[ode]             mode                (0         )] :Optional  :Mode
-    [-dt[heta]           dtheta              (1         )] :Optional  :dtheta
-    [-dp[si]             dpsi                (1         )] :Optional  :dpsi
-    [-m[odeof]s[election]ms                  (0         )] :Optional  :modeofselection
-    [-i[nitial]r[andom]d[ata]ird                 (1         )] :Optional  :InitialRandomData
-    [-M[ax]C[ount]       MC                  (100       )] :Optional  :MaxCount
-    [-F[ileName]H[eader] FileNameHeader      (EulerAngle)] :Optional  :FileNameHeader
-    [-m[odeof]i[nitial]d[ada]mid                 (0         )] :Optional  :modeofinitialdata
-    [-i[nputFile]i[nitial]d[ata]InInitial           (NULL      )] :Optional  :InputDataFileOfInitialData
-    [-m[odeof]s[tart]p[oint]msp                 (0         )] :Optional  :mode of start point
-    [-m[odeof]a[ngular]a[rea]maa                 (0         )] :Optional  :mode of angular area
-    [-p[revious]dt[heta] pdtheta             (0         )] :Optional  :previous dtheta
-    [-p[revious]dp[si]   pdpsi               (0         )] :Optional  :previous dpsi
-    [-m[ode]L[calculation]modeL               (0         )] :Optional  :Mode of L calculation
-    [-m[ode]T[hreshold]A[ngularweight]modeTA              (0         )] :Optional  :Mode of Threshold of AngularWeight
-    [-m[ode]c[alculation]a[rea]modeCA              (0         )] :Optional  :mode of Lvalue of calculation area
-    [-t[hreshold]c[alculation]a[rea]TCA                 (0         )] :Optional  :Threshold of Lvalue of calculation area
-    [-m[ode]f[ix]        modeF               (0         )] :Optional  :mode of fix
+    [-I[nputFileList]    In                  (NULL      ).as(inFileListNoOpen    ) ] :Essential :InputDataFileList
+    [-o[utput]           Out                 (NULL      ).as(outFileNoOpen       ) ] :Essential :OutputDataFile
+    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
+    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
+    [-dt[heta]           dtheta              (1         ).as(Real                ) ] :Optional  :dtheta
+    [-dp[si]             dpsi                (1         ).as(Real                ) ] :Optional  :dpsi
+    [-m[odeof]s[election]ms                  (0         ).as(Integer             ) ] :Optional  :modeofselection
+    [-i[nitial]r[andom]d[ata]ird                 (1         ).as(Integer             ) ] :Optional  :InitialRandomData
+    [-M[ax]C[ount]       MC                  (100       ).as(Integer             ) ] :Optional  :MaxCount
+    [-F[ileName]H[eader] FileNameHeader      (EulerAngle).as(String              ) ] :Optional  :FileNameHeader
+    [-m[odeof]i[nitial]d[ada]mid                 (0         ).as(Integer             ) ] :Optional  :modeofinitialdata
+    [-i[nputFile]i[nitial]d[ata]InInitial           (NULL      ).as(inFile              ) ] :Optional  :InputDataFileOfInitialData
+    [-m[odeof]s[tart]p[oint]msp                 (0         ).as(Integer             ) ] :Optional  :mode of start point
+    [-m[odeof]a[ngular]a[rea]maa                 (0         ).as(Integer             ) ] :Optional  :mode of angular area
+    [-p[revious]dt[heta] pdtheta             (0         ).as(Integer             ) ] :Optional  :previous dtheta
+    [-p[revious]dp[si]   pdpsi               (0         ).as(Integer             ) ] :Optional  :previous dpsi
+    [-m[ode]L[calculation]modeL               (0         ).as(Integer             ) ] :Optional  :Mode of L calculation
+    [-m[ode]T[hreshold]A[ngularweight]modeTA              (0         ).as(Integer             ) ] :Optional  :Mode of Threshold of AngularWeight
+    [-m[ode]c[alculation]a[rea]modeCA              (0         ).as(Integer             ) ] :Optional  :mode of Lvalue of calculation area
+    [-t[hreshold]c[alculation]a[rea]TCA                 (0         ).as(Real                ) ] :Optional  :Threshold of Lvalue of calculation area
+    [-m[ode]f[ix]        modeF               (0         ).as(Integer             ) ] :Optional  :mode of fix
 
 ----- ModeSelection -----
 -ms : 0 : random