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[eos/optional.git] / doc / SmallTools / mrcImageShapeSearch.html
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+<HTML>
+<HEAD>
+<TITLE>mrcImageShapeSearch</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageShapeSearch</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageShapeSearch
+Options:
+    [-i[nput]            In                  (NULL      ).as(inFile::mrcImage    ) ] :Essential :Input
+    [-o[utput]           Out                 (NULL      ).as(outFile::mrcImage   ) ] :Essential :Output
+    [-Shape              Shape               (NULL      ).as(outFile::mrcImage   ) ] :Optional  :Output
+    [-n[Cube]            nCube               (0         ).as(Integer             ) ] :Optional  :Mode
+    [-r[adius]           minR                (3         ).as(Integer             ) 
+                         maxR                (5         ).as(Integer             ) 
+                         delR                (1         ).as(Integer             ) ] :Optional  :Radius[pixel]
+    [-l[ength]           minL                (3         ).as(Integer             ) 
+                         maxL                (5         ).as(Integer             ) 
+                         delL                (1         ).as(Integer             ) ] :Optional  :Length[pixel]
+    [-O[utput]V[ector]BILDOutVectorBILD       (NULL      ).as(outFile::BILD       ) ] :Optional  :Output:BILD-vector
+    [-Phi                minPhi              (0.0       ).as(Real                ) 
+                         maxPhi              (359.0     ).as(Real                ) 
+                         delPhi              (45.0      ).as(Real                ) ] :Optional  :around z-axis[degree]
+    [-Theta              minTheta            (0.0       ).as(Real                ) 
+                         maxTheta            (359.0     ).as(Real                ) 
+                         delTheta            (45.0      ).as(Real                ) ] :Optional  :around x-axis[degree]
+    [-Psi                minPsi              (0.0       ).as(Real                ) 
+                         maxPsi              (350.0     ).as(Real                ) 
+                         delPsi              (45.0      ).as(Real                ) ] :Optional  :around x-axis[degree]
+    [-thres[Zscore]      thresZscore         (1.0       ).as(Real                ) ] :Optional  :Zscore
+    [-interp[olationMode]interpMode          (0         ).as(Integer             ) ] :Optional  :interpMode
+    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
+    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
+----- Additional Usage -----
+0: Cylinder with radius and length
+1: Disk with radius and length(thickness)
+2: Sphere with radius 
+</PRE>
+</BODY>
+</HTML>