Document Added

[eos/optional.git] / doc / SmallTools / pdb2mrc.html

diff --git a/doc/SmallTools/pdb2mrc.html b/doc/SmallTools/pdb2mrc.html
index 6e486ff..d6991cb 100644 (file)
--- a/doc/SmallTools/pdb2mrc.html
+++ b/doc/SmallTools/pdb2mrc.html
@@ -8,21 +8,21 @@
 <PRE>
 Usage: pdb2mrc
 Options:
-    [-i[nput]            In                  (NULL      )] :Essential :InputDataFile
-    [-o[utput]           Out                 (NULL      )] :Optional  :OutputDataFile(3D)
-    [-nx                 nx                  (1         )] :Optional  :Pixel[Def:]
-    [-ny                 ny                  (1         )] :Optional  :Pixel[Def:]
-    [-nz                 nz                  (1         )] :Optional  :Pixel[Def:]
-    [-Sx[tart]           Startx              (0.0       )] :Optional  :Startx[A]
-    [-Sy[tart]           Starty              (0.0       )] :Optional  :Starty[A]
-    [-Sz[tart]           Startz              (0.0       )] :Optional  :Startz[A]
-    [-dx                 dx                  (2.5       )] :Optional  :dx
-    [-dy                 dy                  (2.5       )] :Optional  :dy
-    [-dz                 dz                  (2.5       )] :Optional  :dz
-    [-w[eight]           Weight              (1.0       )] :Optional  :Weight
-    [-sig[ma]            Sigma               (0.0       )] :Optional  :Sigma[A]
-    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
-    [-m[ode]             mode                (0         )] :Optional  :Mode
+    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
+    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Optional  :OutputDataFile(3D)
+    [-nx                 nx                  (1         ).as(Integer             ) ] :Optional  :Pixel[Def:]
+    [-ny                 ny                  (1         ).as(Integer             ) ] :Optional  :Pixel[Def:]
+    [-nz                 nz                  (1         ).as(Integer             ) ] :Optional  :Pixel[Def:]
+    [-Sx[tart]           Startx              (0.0       ).as(Real                ) ] :Optional  :Startx[A]
+    [-Sy[tart]           Starty              (0.0       ).as(Real                ) ] :Optional  :Starty[A]
+    [-Sz[tart]           Startz              (0.0       ).as(Real                ) ] :Optional  :Startz[A]
+    [-dx                 dx                  (2.5       ).as(Real                ) ] :Optional  :dx
+    [-dy                 dy                  (2.5       ).as(Real                ) ] :Optional  :dy
+    [-dz                 dz                  (2.5       ).as(Real                ) ] :Optional  :dz
+    [-w[eight]           Weight              (1.0       ).as(Real                ) ] :Optional  :Weight
+    [-sig[ma]            Sigma               (0.0       ).as(Real                ) ] :Optional  :Sigma[A]
+    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
+    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
 >>> mode 
 mode: DensityMode
 0: Same Gaussian