-/bin/bash: pdb2mrc2dWithCTF: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>pdb2mrc2dWithCTF</TITLE>
+</HEAD>
+<BODY>
+<H1>pdb2mrc2dWithCTF</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: pdb2mrc2dWithCTF
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Essential :Input: PDB
+ [-o[utput] Out (NULL ).as(outFile ) ] :Essential :Output: MRC
+ [-N Nx (2048 ).as(Integer )
+ Ny (2048 ).as(Integer ) ] :Optional :Input: Nx Ny [pixel]
+ [-d dx (1.72 ).as(Real )
+ dy (1.72 ).as(Real ) ] :Optional :Input: dx dy [A]
+ [-Centre cx (0 ).as(Real )
+ cy (0 ).as(Real )
+ cz (0 ).as(Real ) ] :Optional :Input: CentreX CentreY [A]
+ [-n nx (64 ).as(Integer )
+ ny (64 ).as(Integer ) ] :Optional :Input: nx ny for subimage [pixel]
+ [-kV kV (200. ).as(Real ) ] :Optional :kV
+ [-Cs Cs (1.7 ).as(Real ) ] :Optional :Cs
+ [-d[e]f[ocus] Defocus (10000 ).as(Real ) ] :Optional :Defocus [A] at z = 0
+ [-A[overP] AoverP (0.07 ).as(Real ) ] :Optional :AoverP
+ [-Ain Ain (0.2 ).as(Real ) ] :Optional :Beta: IlluminationAngle [mrad]
+ [-ctfMode ctfMode (33 ).as(Integer ) ] :Optional :ctfMode
+ [-E[uler]A[ngle] EulerAngle (XEYS ).as(String )
+ Rot1 (0 ).as(Real )
+ Rot2 (0 ).as(Real )
+ Rot3 (0 ).as(Real ) ] :Optional :EulerAngle: [degree]
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+</PRE>
+</BODY>
+</HTML>
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