Document Added

[eos/optional.git] / doc / SmallTools / pdbAtomSection.html

diff --git a/doc/SmallTools/pdbAtomSection.html b/doc/SmallTools/pdbAtomSection.html
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--- a/doc/SmallTools/pdbAtomSection.html
+++ b/doc/SmallTools/pdbAtomSection.html
@@ -8,23 +8,23 @@
 <PRE>
 Usage: pdbAtomSection
 Options:
-    [-i[nput]            In                  (NULL      )] :Essential :InputDataFile
-    [-i[nput of ]f[lags] InFlags             (NULL      )] :Optional  :InputFlagsFile
-    [-o[utput]           Out                 (NULL      )] :Essential :OutputDataFile
-    [-dist[ance]         distance            (2.5       )] :Optional  :DistanceOfSections
-    [-zmin[imum]         zmin                (0.0       )] :Optional  :Minimum of Z
-    [-zmax[imum]         zmax                (90.0      )] :Optional  :Maximum of Z
-    [-f[lag]m[ode]       flagMode            (13        )] :Optional  :flag mode
-    [-r[adius]           radius              (1.0       )] :Optional  :radius of the circle
-    [-c[ircle]l[ine]w[idth]clinewidth          (0.1       )] :Optional  :circle line width
-    [-p[eptide bond]l[ine]w[idth]plinewidth          (0.1       )] :Optional  :peptide bond line width
-    [-fontsize           fontsize            (2.0       )] :Optional  :font size
-    [-A[bsolute]S[caleofPSFile]scale               (1.0       )] :Optional  :absolute scale of PS file (-AS 1 := 1 mm/A)
-    [-shiftx             shiftx              (0.0       )] :Optional  :pdb Shift x [A]
-    [-shifty             shifty              (0.0       )] :Optional  :pdb Shift y [A]
-    [-shiftz             shiftz              (0.0       )] :Optional  :pdb Shift z [A]
-    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
-    [-m[ode]             mode                (0         )] :Optional  :Mode
+    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
+    [-i[nput of ]f[lags] InFlags             (NULL      ).as(inFile              ) ] :Optional  :InputFlagsFile
+    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile
+    [-dist[ance]         distance            (2.5       ).as(Real                ) ] :Optional  :DistanceOfSections
+    [-zmin[imum]         zmin                (0.0       ).as(Real                ) ] :Optional  :Minimum of Z
+    [-zmax[imum]         zmax                (90.0      ).as(Real                ) ] :Optional  :Maximum of Z
+    [-f[lag]m[ode]       flagMode            (13        ).as(Integer             ) ] :Optional  :flag mode
+    [-r[adius]           radius              (1.0       ).as(Real                ) ] :Optional  :radius of the circle
+    [-c[ircle]l[ine]w[idth]clinewidth          (0.1       ).as(Real                ) ] :Optional  :circle line width
+    [-p[eptide bond]l[ine]w[idth]plinewidth          (0.1       ).as(Real                ) ] :Optional  :peptide bond line width
+    [-fontsize           fontsize            (2.0       ).as(Real                ) ] :Optional  :font size
+    [-A[bsolute]S[caleofPSFile]scale               (1.0       ).as(Real                ) ] :Optional  :absolute scale of PS file (-AS 1 := 1 mm/A)
+    [-shiftx             shiftx              (0.0       ).as(Real                ) ] :Optional  :pdb Shift x [A]
+    [-shifty             shifty              (0.0       ).as(Real                ) ] :Optional  :pdb Shift y [A]
+    [-shiftz             shiftz              (0.0       ).as(Real                ) ] :Optional  :pdb Shift z [A]
+    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
+    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode