Document Added

[eos/optional.git] / doc / SmallTools / pdbSurface.html

diff --git a/doc/SmallTools/pdbSurface.html b/doc/SmallTools/pdbSurface.html
index 50f06e4..a6e1f94 100644 (file)
--- a/doc/SmallTools/pdbSurface.html
+++ b/doc/SmallTools/pdbSurface.html
@@ -8,17 +8,17 @@
 <PRE>
 Usage: pdbSurface
 Options:
-    [-i[nput]            In                  (NULL      )] :Essential :Input: pdbFile
-    [-o[utput]           Out                 (NULL      )] :Essential :Output: pdbFile
-    [-order              order               (1.7       )] :Optional  :Order: [A]
-    [-refine             refine              (2         )] :Optional  :Refine: Meshsize = Order/Refine
-    [-size               size                (3         )] :Optional  :Refine: Shell thickness = Order/Refine*Size
-    [-weight             weight              (100.0     )] :Optional  :Weight
-    [-mergin             mergin              (3.0       )] :Optional  :SearchArea
-    [-thres              thresHold           (0.0       )] :Optional  :thresHold
-    [-densityMode        DensityMode         (0         )] :Optional  :DensityMode
-    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
-    [-m[ode]             mode                (0         )] :Optional  :Mode
+    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :Input: pdbFile
+    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :Output: pdbFile
+    [-order              order               (1.7       ).as(Real                ) ] :Optional  :Order: [A]
+    [-refine             refine              (2         ).as(Integer             ) ] :Optional  :Refine: Meshsize = Order/Refine
+    [-size               size                (3         ).as(Integer             ) ] :Optional  :Refine: Shell thickness = Order/Refine*Size
+    [-weight             weight              (100.0     ).as(Real                ) ] :Optional  :Weight
+    [-mergin             mergin              (3.0       ).as(Real                ) ] :Optional  :SearchArea
+    [-thres              thresHold           (0.0       ).as(Real                ) ] :Optional  :thresHold
+    [-densityMode        DensityMode         (0         ).as(Integer             ) ] :Optional  :DensityMode
+    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
+    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
 ----- Additional Usage -----
 </PRE>
 </BODY>