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-<TITLE>defocusDeterminationFromThonRing</TITLE>
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-<H1>defocusDeterminationFromThonRing</H1>
-<H2>Usage</H2>
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-Usage: defocusDeterminationFromThonRing
-Options:
- [-i[nput] In (stdin )] :Optional :InputDataFile
- [-i[nput] N[ame] InN (stdin )] :Optional :InputNameInInformationFile
- [-i[nput] R[eference]InR (stdin )] :Optional :InputReferenceForLength
- [-o[utput] Out (stdout )] :Optional :OutputDataFile
- [-o[utput] I[nformation]OutI (stdout )] :Optional :OutputInformationFile
- [-o[utput] I[nformation]OutI2 (stdout )] :Optional :OutputInformationFile
- [-o[utput] I[nformation]OutI3 (stdout )] :Optional :OutputInformationFile
- [-kV kV (200 )] :Optional :kV
- [-Cs Cs (2.1 )] :Optional :Cs[mm]
- [-A[mplitude contrast]AoverP (0.05 )] :Optional :The ratio of amplitude contrast to phase contrast
- [-c[onfig] configFile (NULL )] :Optional :ConfigurationFile
- [-m[ode] mode (0 )] :Optional :Mode
- [-ctfMode ctfMode (0 )] :Optional :CTFMode
- [-truePitch truePitch (430 )] :Optional :True Pitch
- [-PixelSize PixelSize (5 )] :Optional :Pixel Size [A]
- [-deltadY deltadY (0.5 )] :Optional :A range of deltadY to determine dY.
- [-R[/A] R (NULL )... ] :Variable :ThonRing[/A]
------ Additional Usage -----
->>>> o[uput] I[nformation] <<<<
-This file is used for [mrcImageMultiCTFCompensation and mrcImageCTFCompensation]
->>>> o[uput] I[nformation] 2<<<<
-This file is used for [llDataCTFCompensate -I2]
->>>> o[uput] I[nformation] 3<<<<
-This file is used for [llExtractWithLayerSeparation]
-Options: -truePitch, -PixelSize, -deltadY and -ctfMode
->>>> ctfMode <<<<
- 0: Phase CTF
- 1: PhaseCTF + ratio*AmpCTF
->>>> mode <<<<
-No action
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