Modify Makefile for util/src

[eos/base.git] / src / Tools / pdbUtil / pdbChargeFit / src / pdbChargeFit.html

diff --git a/src/Tools/pdbUtil/pdbChargeFit/src/pdbChargeFit.html b/src/Tools/pdbUtil/pdbChargeFit/src/pdbChargeFit.html
index 7b0bae9..a429b73 100755 (executable)
--- a/src/Tools/pdbUtil/pdbChargeFit/src/pdbChargeFit.html
+++ b/src/Tools/pdbUtil/pdbChargeFit/src/pdbChargeFit.html
@@ -8,18 +8,19 @@
 <PRE>
 Usage: pdbChargeFit
 Options:
-    [-i[nput]f[ixed pdb] InFix               (NULL      )] :Essential :InputFixedPdbFile
-    [-i[nput]m[oved pdb] InMove              (NULL      )] :Essential :InputMovedPdbFile
-    [-o[utput]           OutTxt              (NULL      )] :Essential :OutputTextFile
-    [-s[ymmetry of helix(degree/A)]symmetry            (0.47096   )] :Optional  :default: 13/28
-    [-zmin               zmin                (-28       )] :Optional  :minimum z
-    [-zmax               zmax                (28        )] :Optional  :maximum z
-    [-zDel[ta]           zDel                (1         )] :Optional  :delta z
-    [-mind[istance]      mind                (1         )] :Optional  :set atoms distance to mind
-    [-maxd[istance]      maxd                (5         )] :Optional  :ignore atoms distance
-    [-a[xis coordinate]  axisX               (70        )axisY               (70        )] :Optional  :(x, y)
-    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
-    [-m[ode]             mode                (0         )] :Optional  :Mode
+    [-i[nput]f[ixed pdb] InFix               (NULL      ).as(inFile              ) ] :Essential :InputFixedPdbFile
+    [-i[nput]m[oved pdb] InMove              (NULL      ).as(inFile              ) ] :Essential :InputMovedPdbFile
+    [-o[utput]           OutTxt              (NULL      ).as(outFile             ) ] :Essential :OutputTextFile
+    [-s[ymmetry of helix(degree/A)]symmetry            (0.47096   ).as(Real                ) ] :Optional  :default: 13/28
+    [-zmin               zmin                (-28       ).as(Real                ) ] :Optional  :minimum z
+    [-zmax               zmax                (28        ).as(Real                ) ] :Optional  :maximum z
+    [-zDel[ta]           zDel                (1         ).as(Real                ) ] :Optional  :delta z
+    [-mind[istance]      mind                (1         ).as(Real                ) ] :Optional  :set atoms distance to mind
+    [-maxd[istance]      maxd                (5         ).as(Real                ) ] :Optional  :ignore atoms distance
+    [-a[xis coordinate]  axisX               (70        ).as(Real                ) 
+                         axisY               (70        ).as(Real                ) ] :Optional  :(x, y)
+    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
+    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
 ----- Algorythm -----
 score = Sum(1/SQR(length))
 , where length is the set of length between charged atoms