X-Git-Url: http://git.osdn.net/view?a=blobdiff_plain;f=doc%2FSmallTools%2FmrcImageModelCreate.html;h=08b2639c78880320f67ede1f62f91c46faca5a9e;hb=HEAD;hp=b32cb2bc048625255ce820078b92045e26e0f243;hpb=159fdcd23501c2ecdac036404a4018fc902655a5;p=eos%2Foptional.git diff --git a/doc/SmallTools/mrcImageModelCreate.html b/doc/SmallTools/mrcImageModelCreate.html index b32cb2b..08b2639 100644 --- a/doc/SmallTools/mrcImageModelCreate.html +++ b/doc/SmallTools/mrcImageModelCreate.html @@ -8,29 +8,33 @@
Usage: mrcImageModelCreate Options: - [-o[utput] Out (NULL )] :Essential :OutputDataFile - [-i[nput] In (NULL )] :Optional :InputDataFile - [-nx nx (70 )] :Optional :Real length = nx * lx - [-ny ny (70 )] :Optional :Real length = ny * ly - [-nz nz (100 )] :Optional :Real lenght = nz * lz - [-r r (1 )] :Optional :Radius[pixel] - [-lx lx (5.0 )] :Optional :Pixel Size[Angstrom] - [-ly ly (5.0 )] :Optional :Pixel Size[Angstrom] - [-lz lz (5.0 )] :Optional :Pixel Size[Angstrom] - [-radius radius (150 )] :Optional :filament radius [A] - [-n nHelix (3 )] :Optional :n-helix - [-dz zPitch (143 )] :Optional :pitch [A] - [-dphi deltaPhi (40 )] :Optional :rotation angle [degree] - [-phi phiAngle (120 )] :Optional :rotation angle in the same level [degree] - [-sz startZ (0 )] :Optional :start z [A] - [-ez endZ (500 )] :Optional :end z [A] - [-sphi startPhi (0 )] :Optional :start angle [degree] - [-sphi2 startPhi2 (40 )] :Optional :start angle 2 [degree] - [-inMode inMode (0 )] :Optional :inMode - [-units units (9 )] :Optional :units number - [-fm fm (0 )] :Optional :formation - [-c[onfig] configFile (NULL )] :Optional :ConfigurationFile - [-m[ode] mode (0 )] :Optional :Mode + [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile + [-i[nput] In (NULL ).as(inFile ) ] :Optional :InputDataFile + [-nx nx (70 ).as(Integer ) ] :Optional :Real length = nx * lx + [-ny ny (70 ).as(Integer ) ] :Optional :Real length = ny * ly + [-nz nz (100 ).as(Integer ) ] :Optional :Real lenght = nz * lz + [-r r (1 ).as(Integer ) ] :Optional :Radius[pixel] + [-l l (1 ).as(Integer ) ] :Optional :Length[pixel] + [-lx lx (5.0 ).as(Real ) ] :Optional :Pixel Size[Angstrom] + [-ly ly (5.0 ).as(Real ) ] :Optional :Pixel Size[Angstrom] + [-lz lz (5.0 ).as(Real ) ] :Optional :Pixel Size[Angstrom] + [-radius radius (150 ).as(Real ) ] :Optional :filament radius [A] + [-n nHelix (3 ).as(Integer ) ] :Optional :n-helix + [-dz zPitch (143 ).as(Real ) ] :Optional :pitch [A] + [-dphi deltaPhi (40 ).as(Real ) ] :Optional :rotation angle [degree] + [-phi phiAngle (120 ).as(Real ) ] :Optional :rotation angle in the same level [degree] + [-sz startZ (0 ).as(Real ) ] :Optional :start z [A] + [-ez endZ (500 ).as(Real ) ] :Optional :end z [A] + [-sphi startPhi (0 ).as(Real ) ] :Optional :start angle [degree] + [-sphi2 startPhi2 (40 ).as(Real ) ] :Optional :start angle 2 [degree] + [-inMode inMode (0 ).as(Integer ) ] :Optional :inMode + [-units units (9 ).as(Integer ) ] :Optional :units number + [-fm fm (0 ).as(Integer ) ] :Optional :formation + [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile + [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode +>>>> +-nx -ny -nz : image size[pixel] +-lx -ly -lz : pixel/voxel size[Angstrom] >>>> Mode <<<< (-m) 0: Circle(a right cylinder:3D) and Triangle(a trigonal prism:3D) Optional argument : -nx -ny -nz -r @@ -79,6 +83,8 @@ Options: Optional argument : -nx -ny 7: SheppLogan 3D Optional argument : -nx -ny -nz +8: Cylinder 3D + Optional argument : -nx -ny -nz -r -l