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diff --git a/src/Tools/rec3d/commonLinesSearchByVoting/src/commonLinesSearchByVoting.html b/src/Tools/rec3d/commonLinesSearchByVoting/src/commonLinesSearchByVoting.html
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-
-
-commonLinesSearchByVoting
-
-
-commonLinesSearchByVoting
-Usage
-
-Usage: commonLinesSearchByVoting
-Options:
- [-i[nput] In (NULL ).as(inFile ) ] :Optional :InputCorrelationMapList
- [-i[nput]c[ommonLines]InC (NULL ).as(inFile ) ] :Optional :InputCommonLinesList
- [-i[nput]c[orrect]c[ommonLines]InCC (NULL ).as(inFile ) ] :Optional :InputCorrectCommonLinesList
- [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputFilteredCommonLinesList
- [-o[utput]a[ll] OutA (NULL ).as(outFile ) ] :Optional :OutputAllCommonLinesList
- [-o[utput]d[etecting]r[ate]OutDR (NULL ).as(outFile ) ] :Optional :OutputDetectingRate
- [-o[utput]d[etecting]r[ate]a[ll]OutDRA (NULL ).as(outFile ) ] :Optional :OutputDetectingRateALL
- [-o[utput]p[eaks]h[istgram]OutPH (NULL ).as(outFile ) ] :Optional :OutputPeaksHistgram
- [-e[stimation]n[umber]en (1 ).as(Integer ) ] :Optional :EstimationNumber
- [-th[resholdLevel] th (1 ).as(Integer ) ] :Optional :ThresholdLevel
- [-histgramCreate[Flag] ] :Optional :HistgramCreateFlag
- [-extend[VotingFlag] ] :Optional :ExtendVotingFlag
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Additional Usage -----
-Common lines are filtered only top G*100/sqrt(N) %, where N is the number of projections.
--extend Option
- Execute extended voting.
--m Option
- 0: normal
- 1: self voting (each angle histgram peak is multiplyed by its correlation value)
--th Option
- :
- -1: G = 2^(-1)
- 0: G = 2^0
- 1: G = 2^1
- 2: G = 2^2
- :
--en Option
- Estimation number of common line in a map.
- Running time is proportional to this number.
- Default; 1: the largest value in a correlation map is detected as common line.
-MapList Format
- numOfProjection1 numOfProjection2 mapFileName
- : : :
-CLinesList Format
- numOfProjection1 numOfProjection2 [ degOfProjection1 degOfProjection2 degDiff cor ] mapFileName
- : : : : : : :
-Voting Algorithm by Amit Singer et al (2010),
-"Detecting consistent common lines in cryo-EM by voting " (doi:10.1016/j.jsb.2009.11.003)
-----------------------------
-
-
-
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