OSDN Git Service

Merge remote-tracking branch 'refs/remotes/origin/master'
authorTakuo Yasunaga <yasunaga@phys.kyutech.ac.jp>
Sat, 19 Nov 2022 10:51:04 +0000 (19:51 +0900)
committerTakuo Yasunaga <yasunaga@phys.kyutech.ac.jp>
Sat, 19 Nov 2022 10:51:04 +0000 (19:51 +0900)
commitc6f715db9512a7b979e484ec5f1fd92f410c45be
treeb16845a23dfd30e95bdff007bba27816bd4cfe54
parent1e748372a671b00d68409295c6079f3e2bb53c1f
parentdfe085c4a1f53fa8551dc522aacbdc9dc53598aa
Merge remote-tracking branch 'refs/remotes/origin/master'

 Conflicts:
src/Objects/Makefile.org
src/Tools/filter/mrc2hdf/src/mrc2hdf.c

 It looks like you may be committing a merge.
 If this is not correct, please remove the file
.git/MERGE_HEAD
 and try again.

 Please enter the commit message for your changes. Lines starting
 with '#' will be ignored, and an empty message aborts the commit.
 On branch master
 Your branch and 'origin/master' have diverged,
 and have 2 and 14 different commits each, respectively.
   (use "git pull" to merge the remote branch into yours)

 All conflicts fixed but you are still merging.

 Changes to be committed:
new file:   bin/mrcImageMovingModelCreate
new file:   bin/mrcImageSeriesNormalizing
modified:   bin/wish/Display2/tclIndex
modified:   env/Eos_env
modified:   hostdepend/ARM64MAC64
modified:   include/Matrix3D.h
modified:   include/Vector.h
modified:   include/eosMath.h
new file:   include/eosNonLinearFitting.h
new file:   include/eosStarFile.h
modified:   include/eosString.h
modified:   include/lmrcImageFeatureCalc.h
modified:   include/lmrcImageModelCreate.h
modified:   include/lmrcImageNoiseCreate.h
modified:   include/lmrcImageNormalizing.h
modified:   include/lmrcSinogramFET.h
modified:   include/mrcImage.h
new file:   lib/ARM64MAC64
deleted:    lib/ARM64MAC64/libEosObjects.a
deleted:    lib/ARM64MAC64/shared/10.1.sharedo
deleted:    lib/ARM64MAC64/shared/10.2.sharedo
deleted:    lib/ARM64MAC64/shared/10.5.sharedo
deleted:    lib/ARM64MAC64/shared/10.6.sharedo
deleted:    lib/ARM64MAC64/shared/10.7.sharedo
deleted:    lib/ARM64MAC64/shared/11.1.sharedo
deleted:    lib/ARM64MAC64/shared/13.10.sharedo
deleted:    lib/ARM64MAC64/shared/15.2.sharedo
deleted:    lib/ARM64MAC64/shared/15.4.sharedo
deleted:    lib/ARM64MAC64/shared/15.5.sharedo
deleted:    lib/ARM64MAC64/shared/15.7.sharedo
deleted:    lib/ARM64MAC64/shared/2.1.sharedo
deleted:    lib/ARM64MAC64/shared/2.3.sharedo
deleted:    lib/ARM64MAC64/shared/6.1.sharedo
deleted:    lib/ARM64MAC64/shared/6.2.sharedo
deleted:    lib/ARM64MAC64/shared/6.4.sharedo
deleted:    lib/ARM64MAC64/shared/8.2.sharedo
deleted:    lib/ARM64MAC64/shared/8.5.sharedo
deleted:    lib/ARM64MAC64/shared/Vector.sharedo
deleted:    lib/ARM64MAC64/shared/VectorScalarProduct.sharedo
deleted:    lib/ARM64MAC64/shared/arrayInfo.sharedo
deleted:    lib/ARM64MAC64/shared/arrayInit.sharedo
deleted:    lib/ARM64MAC64/shared/arrayPCA.sharedo
deleted:    lib/ARM64MAC64/shared/arrayRead.sharedo
deleted:    lib/ARM64MAC64/shared/arrayWrite.sharedo
deleted:    lib/ARM64MAC64/shared/avsFileInit.sharedo
deleted:    lib/ARM64MAC64/shared/avsFileSet.sharedo
deleted:    lib/ARM64MAC64/shared/avsFileWrite.sharedo
deleted:    lib/ARM64MAC64/shared/bmpFileInfo.sharedo
deleted:    lib/ARM64MAC64/shared/bmpFileRead.sharedo
deleted:    lib/ARM64MAC64/shared/clusterLogAnalysis.sharedo
deleted:    lib/ARM64MAC64/shared/clusterLogInit.sharedo
deleted:    lib/ARM64MAC64/shared/clusterLogRead.sharedo
deleted:    lib/ARM64MAC64/shared/clusterLogUtil.sharedo
deleted:    lib/ARM64MAC64/shared/clusterLogWrite.sharedo
deleted:    lib/ARM64MAC64/shared/contourCreate.sharedo
deleted:    lib/ARM64MAC64/shared/crystalHelix.sharedo
deleted:    lib/ARM64MAC64/shared/crystalInfoFile.sharedo
deleted:    lib/ARM64MAC64/shared/crystalInit.sharedo
deleted:    lib/ARM64MAC64/shared/crystalUtil.sharedo
deleted:    lib/ARM64MAC64/shared/ctfDeterminationFromPhaseComparison.sharedo
deleted:    lib/ARM64MAC64/shared/ctfFunction.sharedo
deleted:    lib/ARM64MAC64/shared/ctfInfoPVM.sharedo
deleted:    lib/ARM64MAC64/shared/ctfInfoRead.sharedo
deleted:    lib/ARM64MAC64/shared/ctfInfoWrite.sharedo
deleted:    lib/ARM64MAC64/shared/ctfInfoWrite2.sharedo
deleted:    lib/ARM64MAC64/shared/ctfWeight.sharedo
deleted:    lib/ARM64MAC64/shared/ctfZeroPoint.sharedo
deleted:    lib/ARM64MAC64/shared/ctfforbayes.sharedo
deleted:    lib/ARM64MAC64/shared/ctfforbayescheck.sharedo
deleted:    lib/ARM64MAC64/shared/dcd.sharedo
deleted:    lib/ARM64MAC64/shared/decoder.sharedo
deleted:    lib/ARM64MAC64/shared/defocuslikelihood.sharedo
deleted:    lib/ARM64MAC64/shared/dmFileInfo.sharedo
deleted:    lib/ARM64MAC64/shared/dmFileInit.sharedo
deleted:    lib/ARM64MAC64/shared/dmFileRead.sharedo
deleted:    lib/ARM64MAC64/shared/dmFileUtil.sharedo
deleted:    lib/ARM64MAC64/shared/dsn6Init.sharedo
deleted:    lib/ARM64MAC64/shared/dsn6Write.sharedo
deleted:    lib/ARM64MAC64/shared/emDataRead.sharedo
deleted:    lib/ARM64MAC64/shared/eosBayesCondition.sharedo
deleted:    lib/ARM64MAC64/shared/eosBayesDistributionInit.sharedo
deleted:    lib/ARM64MAC64/shared/eosBayesDistributionInitialProbabilitySet.sharedo
deleted:    lib/ARM64MAC64/shared/eosBayesEstimation.sharedo
deleted:    lib/ARM64MAC64/shared/eosBayesFree.sharedo
deleted:    lib/ARM64MAC64/shared/eosBayesParameterOfMaxPosterior.sharedo
deleted:    lib/ARM64MAC64/shared/eosBayesRead.sharedo
deleted:    lib/ARM64MAC64/shared/eosBayesWrite.sharedo
deleted:    lib/ARM64MAC64/shared/eosBayesflag.sharedo
deleted:    lib/ARM64MAC64/shared/eosBessel.sharedo
deleted:    lib/ARM64MAC64/shared/eosFunc.sharedo
deleted:    lib/ARM64MAC64/shared/eosMathStatistics.sharedo
deleted:    lib/ARM64MAC64/shared/eosPThread.sharedo
deleted:    lib/ARM64MAC64/shared/eosPThreadCreate.sharedo
deleted:    lib/ARM64MAC64/shared/eosPThreadInit.sharedo
deleted:    lib/ARM64MAC64/shared/eosPThreadJoin.sharedo
deleted:    lib/ARM64MAC64/shared/eosPointCopy.sharedo
deleted:    lib/ARM64MAC64/shared/eosPointProject.sharedo
deleted:    lib/ARM64MAC64/shared/eosPointRead.sharedo
deleted:    lib/ARM64MAC64/shared/eosPointRotate.sharedo
deleted:    lib/ARM64MAC64/shared/eosPointUtil.sharedo
deleted:    lib/ARM64MAC64/shared/eosPointWrite.sharedo
deleted:    lib/ARM64MAC64/shared/fftn.sharedo
deleted:    lib/ARM64MAC64/shared/fileInit.sharedo
deleted:    lib/ARM64MAC64/shared/fileOpen.sharedo
deleted:    lib/ARM64MAC64/shared/gifFileInit.sharedo
deleted:    lib/ARM64MAC64/shared/gifFileWrite.sharedo
deleted:    lib/ARM64MAC64/shared/gifUtil.sharedo
deleted:    lib/ARM64MAC64/shared/lAllCommonLineCalculation.sharedo
deleted:    lib/ARM64MAC64/shared/lAngularWeightCalculation.sharedo
deleted:    lib/ARM64MAC64/shared/lCommonLineCalculation.sharedo
deleted:    lib/ARM64MAC64/shared/lCommonLineDataSetInPlaneRotation.sharedo
deleted:    lib/ARM64MAC64/shared/lCommonLinesDataSet.sharedo
deleted:    lib/ARM64MAC64/shared/lDescartesIntoPolar.sharedo
deleted:    lib/ARM64MAC64/shared/lEvaluateCorrelationMapwithCommonLine.sharedo
deleted:    lib/ARM64MAC64/shared/lFETOrientationSearchByAnnealing.sharedo
deleted:    lib/ARM64MAC64/shared/lFETOrientationSearchByFeatureAlignment.sharedo
deleted:    lib/ARM64MAC64/shared/lFETOrientationSearchByFeatureAlignmentInitSet.sharedo
deleted:    lib/ARM64MAC64/shared/lFETOrientationSearchByFeatureAlignmentSphere.sharedo
deleted:    lib/ARM64MAC64/shared/lFETmapOrientationSearchBySimultaneousFitting.sharedo
deleted:    lib/ARM64MAC64/shared/lFETsmallMapSetCreate_forSimultaneousMinimization.sharedo
deleted:    lib/ARM64MAC64/shared/lFRET.sharedo
deleted:    lib/ARM64MAC64/shared/lInitialDataFileRead.sharedo
deleted:    lib/ARM64MAC64/shared/lJcalulation.sharedo
deleted:    lib/ARM64MAC64/shared/lLcalculation.sharedo
deleted:    lib/ARM64MAC64/shared/lPlaneRotationAngleSet.sharedo
deleted:    lib/ARM64MAC64/shared/lVectorSpline2D.sharedo
deleted:    lib/ARM64MAC64/shared/largeIPRead.sharedo
deleted:    lib/ARM64MAC64/shared/larray2mrc.sharedo
deleted:    lib/ARM64MAC64/shared/lastigmatismDetection.sharedo
deleted:    lib/ARM64MAC64/shared/lbmp2mrc.sharedo
deleted:    lib/ARM64MAC64/shared/lcontour2ps.sharedo
deleted:    lib/ARM64MAC64/shared/lctfDetermination.sharedo
deleted:    lib/ARM64MAC64/shared/lctfDetermine.sharedo
deleted:    lib/ARM64MAC64/shared/ldm2mrc.sharedo
deleted:    lib/ARM64MAC64/shared/leosBayesInit.sharedo
deleted:    lib/ARM64MAC64/shared/leosPointPositionCorrection.sharedo
deleted:    lib/ARM64MAC64/shared/llDataCheck.sharedo
deleted:    lib/ARM64MAC64/shared/llDataETC.sharedo
deleted:    lib/ARM64MAC64/shared/llDataError.sharedo
deleted:    lib/ARM64MAC64/shared/llDataGet.sharedo
deleted:    lib/ARM64MAC64/shared/llDataInfo.sharedo
deleted:    lib/ARM64MAC64/shared/llDataInit.sharedo
deleted:    lib/ARM64MAC64/shared/llDataIntensityInformationGet.sharedo
deleted:    lib/ARM64MAC64/shared/llDataPVM.sharedo
deleted:    lib/ARM64MAC64/shared/llDataRead.sharedo
deleted:    lib/ARM64MAC64/shared/llDataSet.sharedo
deleted:    lib/ARM64MAC64/shared/llDataUtil.sharedo
deleted:    lib/ARM64MAC64/shared/llDataWrite.sharedo
deleted:    lib/ARM64MAC64/shared/lll2ltlg.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataAdd.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataAverage.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataAvgTo.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataAxisSearch.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataAxisSearch2.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataAxisSearchAndAverage.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataCTFCompensate.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataCTFObservation.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataCompare.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataContributionCalcDifferentN.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataDifferenceCalc.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataEquatorAdd.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataExtract.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataFit.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataFit2.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataFitAndAverage.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataFitMergedLL.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataFitOut.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataFitParamInverse.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataFitUtil.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataFitUtilPVM.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataInterpolate.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataLowPassFiltering.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataMergeDifferentN.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataMultiCTFCompensation.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataPhaseShift.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataPrint.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataRescaling.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataSeparationInfoPrint.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataSeparationInfoRead.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataSeparationInfoSet.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataSingleCTFCompensation.sharedo
deleted:    lib/ARM64MAC64/shared/lllDataWeightSet.sharedo
deleted:    lib/ARM64MAC64/shared/lllDatarMaxLimit.sharedo
deleted:    lib/ARM64MAC64/shared/lllDatarMaxLimitForSeparation.sharedo
deleted:    lib/ARM64MAC64/shared/lllExtract.sharedo
deleted:    lib/ARM64MAC64/shared/lllExtractCtfinfFileCreate.sharedo
deleted:    lib/ARM64MAC64/shared/lllExtractWithSeparation.sharedo
deleted:    lib/ARM64MAC64/shared/lllExtractdYEstimate.sharedo
deleted:    lib/ARM64MAC64/shared/lltlg2mrc.sharedo
deleted:    lib/ARM64MAC64/shared/lmolecularEnvelope.sharedo
deleted:    lib/ARM64MAC64/shared/lmolvieMRCread.sharedo
deleted:    lib/ARM64MAC64/shared/lmrc2Dto3D.sharedo
deleted:    lib/ARM64MAC64/shared/lmrc2Dto3DSIRT.sharedo
deleted:    lib/ARM64MAC64/shared/lmrc2bild.sharedo
deleted:    lib/ARM64MAC64/shared/lmrc2contour.sharedo
deleted:    lib/ARM64MAC64/shared/lmrc2gif.sharedo
deleted:    lib/ARM64MAC64/shared/lmrc3Dto2D.sharedo
deleted:    lib/ARM64MAC64/shared/lmrc3Dto2DFFT.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcFETnormalizeBySD.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcFFTCentralSection.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcFFTCentralSectionCompare.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcFFTCentralSectionCompareInfoWrite.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcFFTCentralSectionsGet.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcFFTExpression.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcFFTFGconj.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcFFTFxG.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcFFTInfo.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcFSInfoScatteringAngularDistributionAverageSection.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImage3DPad.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImage3DWindowing.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageAddValue.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageAsProbability.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageAverage.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageBandPassFilter.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageBilateralFilter.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageBinarization.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageBottomHatTransform.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageBoundaryInfo.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCTFCompensation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCTFDetermination.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCTFObservation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCTFSN.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCVE.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCalcArea.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCenterGet.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCentre.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageClosing.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageClusterAnalysis.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCommonLine.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageConnection.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageConnectivityNumberCalc.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageContourSurface.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageContraction.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCorrelation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCorrelationPVM.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCorrelationWithCTFCompensation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageCorrelationinSpace.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageDataMaxAndMinGetByImage.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageDataStraightCopy.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageDeconvolution.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageDensity.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageDensityInverse.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageDensityNormalizationByImage.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageDifferential.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageDilation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageDistanceConversion.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageEdge.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageEdgeAverage.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageEdgeEnhancement.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageErosion.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFFT.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFOMCalc.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFeatureExtraction.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFeatureExtractionCoOccurrence.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFeatureExtractionRunLength.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFileListAndEulerAngleDataRead.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFilterCreate.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFirstNoiseReductionByRelaxation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFloating.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFourierNeighborCorrelation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFourierPowerSpectrum.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageFourierShellCorrelation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageHighPassFilter.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageHighlighting.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageHoleFilling.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageHoughTransform.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageLabeling.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageLocalMaximumValuesFind.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageLogicalOperation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageLowPassFilter.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageMasking.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageMaxDataGet.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageMirroring.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageModeChange.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageModelCreate.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageMontageCreate.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageMorphology.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageMove.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageMultiCTFCompensation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageMultiplying.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageNegativeLaplacian.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageNormalizing.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageOneLineGet.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageOneLineSimilarityCalc.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageOpening.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagePad.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagePartImageSegmentation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagePattersonFunctionCalc.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagePixelSummationOfProbabilityGetByImage.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagePosterization.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagePrewitt.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageProjection.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageProportionalDensityLevelSetByImage.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageROI2D.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageROI3D.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageROInotChangeHeaderLength.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageRadialDistribution.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageRhoFiltering.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageRoberts.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageRotation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSSDA.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSamplingUnitChange.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSecondNoiseReductionByRelaxation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSecondNoiseReductionByRelaxationDijDimensionSet.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSecondNoiseReductionByRelaxationDijValueSet.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSecondNoiseReductionByRelaxationQValueSet.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSecondNoiseReductionByRelaxationRValueSet.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageShapeModePrint.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageShapePCA.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageShapeSearch.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageShift.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageShrink.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSigmaCalculate.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSinogram.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSinogramCorrelation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSinogramCorrelationAdditionalWeight.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSinogramFFT.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSmoothing.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSobel.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSoftEdge.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSolventFlattening.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSpatialFrequencyFilter.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSphere.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSplit.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageStack.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageStudentCalculate.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSubtractionCalc.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSummationCalculate.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageSymmetryFind.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageTfunction.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageToFFT.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageToneReversal.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageTopHatTransform.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageTransformDescartesIntoPolar.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageTranspose.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageTriming.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageUnsharpening.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageVolumeCalc.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImageWindowing.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagesFTest.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagesStatDataGet.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagesTTest.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagesVarianceAnalysis.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcImagesVarianceMap.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcMultiFFTCentralSectionsCompare.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcMultiFFTCentralSectionsSigma.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcNeuralNet.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcSinogramFET.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcSinogramFETPCA.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcSinogramFETcorrelationMap.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcSinogramFETnormalizedMap.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcSinogramFETreferredCorrelation.sharedo
deleted:    lib/ARM64MAC64/shared/lmrcSinogramFETsmoothParameterMatching.sharedo
deleted:    lib/ARM64MAC64/shared/lpdb2mrc2d.sharedo
deleted:    lib/ARM64MAC64/shared/lpdb2mrc3d.sharedo
deleted:    lib/ARM64MAC64/shared/lpdbCoord.sharedo
deleted:    lib/ARM64MAC64/shared/lpdbCoordInfo.sharedo
deleted:    lib/ARM64MAC64/shared/lpdbSelectedAtom.sharedo
deleted:    lib/ARM64MAC64/shared/lpdbSurface.sharedo
deleted:    lib/ARM64MAC64/shared/ltlgDataAllocate.sharedo
deleted:    lib/ARM64MAC64/shared/ltlgDataGet.sharedo
deleted:    lib/ARM64MAC64/shared/ltlgDataPrint.sharedo
deleted:    lib/ARM64MAC64/shared/ltlgDataReadFile.sharedo
deleted:    lib/ARM64MAC64/shared/ltlgDataWeightModify.sharedo
deleted:    lib/ARM64MAC64/shared/ltlgDataWriteFile.sharedo
deleted:    lib/ARM64MAC64/shared/map2DCoordGet.sharedo
deleted:    lib/ARM64MAC64/shared/mapFileRead.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DEulerAngleGet.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DEulerAngleSet.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DEulerAngles.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DFile.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DInit.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DMultiply.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DMultiplyMatrix.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DMultiplyVector.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DRotation.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DTranslation.sharedo
deleted:    lib/ARM64MAC64/shared/matrix3DUtil.sharedo
deleted:    lib/ARM64MAC64/shared/memoryAllocate.sharedo
deleted:    lib/ARM64MAC64/shared/memoryByteSwap.sharedo
deleted:    lib/ARM64MAC64/shared/memoryClear.sharedo
deleted:    lib/ARM64MAC64/shared/memoryCopy.sharedo
deleted:    lib/ARM64MAC64/shared/monoSound.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageCheckFFT.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageCheckSameSize.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageCopy.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageDataSet.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageError.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageGet.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageGetPixels.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageInfo.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageInit.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageOperation.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImagePVM.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImagePrint.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageRead.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageSectionGet.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageSectionSet.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageSet.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageTailer.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageToIntImage.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageUtil.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageUtilityforVariance.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageWrite.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImageWrite2.sharedo
deleted:    lib/ARM64MAC64/shared/mrcImagefuncmin.sharedo
deleted:    lib/ARM64MAC64/shared/mrcRefUtil.sharedo
deleted:    lib/ARM64MAC64/shared/neuralNet.sharedo
deleted:    lib/ARM64MAC64/shared/nr2util.sharedo
deleted:    lib/ARM64MAC64/shared/pdbFileRead.sharedo
deleted:    lib/ARM64MAC64/shared/pdbFileWrite.sharedo
deleted:    lib/ARM64MAC64/shared/pdbGet.sharedo
deleted:    lib/ARM64MAC64/shared/pdbInfoGet.sharedo
deleted:    lib/ARM64MAC64/shared/pdbRotation.sharedo
deleted:    lib/ARM64MAC64/shared/pdbSecondaryStructure.sharedo
deleted:    lib/ARM64MAC64/shared/pdbSet.sharedo
deleted:    lib/ARM64MAC64/shared/pdbTrans.sharedo
deleted:    lib/ARM64MAC64/shared/pdbUtil.sharedo
deleted:    lib/ARM64MAC64/shared/pow2nn.sharedo
deleted:    lib/ARM64MAC64/shared/powerspectraTangentLine.sharedo
deleted:    lib/ARM64MAC64/shared/psFileCircle.sharedo
deleted:    lib/ARM64MAC64/shared/psFileContour.sharedo
deleted:    lib/ARM64MAC64/shared/psFileContour3D.sharedo
deleted:    lib/ARM64MAC64/shared/psFileEnd.sharedo
deleted:    lib/ARM64MAC64/shared/psFileImage.sharedo
deleted:    lib/ARM64MAC64/shared/psFileInit.sharedo
deleted:    lib/ARM64MAC64/shared/psFileLine.sharedo
deleted:    lib/ARM64MAC64/shared/psFilePage.sharedo
deleted:    lib/ARM64MAC64/shared/psFileRead.sharedo
deleted:    lib/ARM64MAC64/shared/psFileString.sharedo
deleted:    lib/ARM64MAC64/shared/psFileUtil.sharedo
deleted:    lib/ARM64MAC64/shared/pvmStart.sharedo
deleted:    lib/ARM64MAC64/shared/randomNormal.sharedo
deleted:    lib/ARM64MAC64/shared/randomUniform.sharedo
deleted:    lib/ARM64MAC64/shared/socketClient.sharedo
deleted:    lib/ARM64MAC64/shared/socketServer.sharedo
deleted:    lib/ARM64MAC64/shared/srandom.sharedo
deleted:    lib/ARM64MAC64/shared/stringGet.sharedo
deleted:    lib/ARM64MAC64/shared/stringGetFromFile.sharedo
deleted:    lib/ARM64MAC64/shared/stringIsSame.sharedo
deleted:    lib/ARM64MAC64/shared/stringUtil.sharedo
deleted:    lib/ARM64MAC64/shared/tgaFileInit.sharedo
deleted:    lib/ARM64MAC64/shared/tgaFilePrint.sharedo
deleted:    lib/ARM64MAC64/shared/tgaFileRead.sharedo
deleted:    lib/ARM64MAC64/shared/thonRing.sharedo
deleted:    lib/ARM64MAC64/shared/tkImgFmtMRC.sharedo
deleted:    lib/ARM64MAC64/shared/tkImgFmtlargeIP.sharedo
deleted:    lib/ARM64MAC64/shared/tkctfInfo.sharedo
modified:   lib/tclIndex
modified:   src/Config/arm64Mac64.inc
modified:   src/Objects/DataExpress/eosRuby/src/Swig/mkmf.log
modified:   src/Objects/DataManip/.Source
modified:   src/Objects/DataManip/eosMATH/Config/Define.inc
modified:   src/Objects/DataManip/eosMATH/inc/eosMath.h
modified:   src/Objects/DataManip/eosMATH/src/.CHeader
new file:   src/Objects/DataManip/eosMATH/src/eosNonLinearFitting.c
new file:   src/Objects/DataManip/eosMATH/src/eosNonLinearFitting.h
renamed:    src/Objects/DataManip/starFile/.Source -> src/Objects/DataManip/eosStarFile/.Source
renamed:    src/Objects/DataManip/starFile/.Source.org -> src/Objects/DataManip/eosStarFile/.Source.org
new file:   src/Objects/DataManip/eosStarFile/Config/Define.inc
renamed:    src/Objects/DataManip/starFile/Config/Target.inc -> src/Objects/DataManip/eosStarFile/Config/Target.inc
renamed:    src/Objects/DataManip/starFile/Makefile -> src/Objects/DataManip/eosStarFile/Makefile
renamed:    src/Objects/DataManip/starFile/doc/.starFile.html -> src/Objects/DataManip/eosStarFile/doc/.eosStarFile.html
renamed:    src/Objects/DataManip/starFile/doc/.footer -> src/Objects/DataManip/eosStarFile/doc/.footer
renamed:    src/Objects/DataManip/starFile/doc/.header -> src/Objects/DataManip/eosStarFile/doc/.header
renamed:    src/Objects/DataManip/starFile/doc/Makefile -> src/Objects/DataManip/eosStarFile/doc/Makefile
new file:   src/Objects/DataManip/eosStarFile/doc/eosStarFile.html
renamed:    src/Objects/DataManip/starFile/inc/Makefile -> src/Objects/DataManip/eosStarFile/inc/Makefile
new file:   src/Objects/DataManip/eosStarFile/inc/eosStarFile.h
new file:   src/Objects/DataManip/eosStarFile/inc/eosStarFile.h.org
renamed:    src/Objects/DataManip/starFile/src/.CCHeader -> src/Objects/DataManip/eosStarFile/src/.CCHeader
renamed:    src/Objects/DataManip/starFile/src/.CHeader -> src/Objects/DataManip/eosStarFile/src/.CHeader
renamed:    src/Objects/DataManip/starFile/src/.Ruby -> src/Objects/DataManip/eosStarFile/src/.Ruby
renamed:    src/Objects/DataManip/starFile/src/.Wish -> src/Objects/DataManip/eosStarFile/src/.Wish
new file:   src/Objects/DataManip/eosStarFile/src/ARM64MAC64
renamed:    src/Objects/DataManip/starFile/src/Makefile -> src/Objects/DataManip/eosStarFile/src/Makefile
new file:   src/Objects/DataManip/eosStarFile/src/eosStarFileDataGet.c
new file:   src/Objects/DataManip/eosStarFile/src/eosStarFileLoopDataGet.c
new file:   src/Objects/DataManip/eosStarFile/src/eosStarFileRead.c
new file:   src/Objects/DataManip/eosStarFile/src/eosStarFileWrite.c
modified:   src/Objects/DataManip/mrcImage/doc/mrcImage.html
modified:   src/Objects/DataManip/mrcImage/inc/mrcImage.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageCrystalCreate.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFeatureCalc.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageFeatureCalc.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageModelCreate.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageModelCreate.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageNoiseCreate.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageNormalizing.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImageNormalizing.h
new file:   src/Objects/DataManip/mrcImage/src/lmrcImagePixelValueSort.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcImagePyramidal.c
modified:   src/Objects/DataManip/mrcImage/src/lmrcSinogramFET.h
modified:   src/Objects/DataManip/mrcImage/src/lmrcSinogramFETcalcWeight.c
modified:   src/Objects/DataManip/mrcImage/src/mrcImageInfo.c
modified:   src/Objects/DataManip/pdbFile/inc/pdbFile.h
modified:   src/Objects/DataManip/pdbFile/src/pdbFileRead.c
modified:   src/Objects/DataManip/pdbFile/src/pdbTrans.c
modified:   src/Objects/DataManip/pdbFile/src/pdbUtil.c
deleted:    src/Objects/DataManip/starFile/Config/Define.inc
deleted:    src/Objects/DataManip/starFile/src/ARM64MAC64
deleted:    src/Objects/DataManip/starFile/src/X86MAC64
modified:   src/Objects/General/File/src/fileInfo.c
modified:   src/Objects/General/Matrix3D/doc/Matrix3D.html
modified:   src/Objects/General/Matrix3D/inc/Matrix3D.h
modified:   src/Objects/General/Vector/doc/Vector.html
modified:   src/Objects/General/Vector/inc/Vector.h
modified:   src/Objects/General/Vector/src/VectorRead.c
modified:   src/Objects/General/eosPThread/src/eosPThreadMutex.c
modified:   src/Objects/General/eosString/inc/eosString.h
modified:   src/Objects/General/eosString/src/stringGet.c
modified:   src/Objects/Makefile
new file:   src/Objects/Makefile.org
modified:   src/Tools/.Source
modified:   src/Tools/.Source.org
modified:   src/Tools/Integration/Display2/src/Display2.html
modified:   src/Tools/Integration/ctfDisplay/src/ctfDisplay.html
modified:   src/Tools/eosPoint/eosPointRotation/src/eosPointRotation.c
modified:   src/Tools/eosPoint/eosPointRotation/src/eosPointRotation.html
new file:   src/Tools/eosStarFile/.Source.org
new file:   src/Tools/eosStarFile/Config/Define.inc
new file:   src/Tools/eosStarFile/Config/Target.inc
new file:   src/Tools/eosStarFile/Makefile
new file:   src/Tools/eosStarFile/eosStarFileCopy/Config/Define.inc
new file:   src/Tools/eosStarFile/eosStarFileCopy/Config/OptionControlFile
new file:   src/Tools/eosStarFile/eosStarFileCopy/Config/Target.inc
new file:   src/Tools/eosStarFile/eosStarFileCopy/Makefile
new file:   src/Tools/eosStarFile/eosStarFileCopy/doc/Makefile
new file:   src/Tools/eosStarFile/eosStarFileCopy/inc/config.h
new file:   src/Tools/eosStarFile/eosStarFileCopy/inc/eosStarFileCopy.h
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/.Depend
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/.Source
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/ARM64MAC64
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/Makefile
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/argCheck.c
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/eosStarFileCopy.c
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/eosStarFileCopy.pane
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/init.c
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/test/Makefile
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/test/data
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/usage.c
new file:   src/Tools/eosStarFile/eosStarFileCopy/src/util.c
modified:   src/Tools/filter/mrc2hdf/Config/OptionControlFile
modified:   src/Tools/filter/mrc2hdf/inc/mrc2hdf.h
modified:   src/Tools/filter/mrc2hdf/src/argCheck.c
modified:   src/Tools/filter/mrc2hdf/src/init.c
modified:   src/Tools/filter/mrc2hdf/src/mrc2hdf.c
modified:   src/Tools/filter/mrc2hdf/src/mrc2hdf.html
modified:   src/Tools/filter/mrc2hdf/src/mrc2hdf.pane
modified:   src/Tools/filter/mrc2hdf/src/test/Makefile
modified:   src/Tools/filter/mrc2hdf/src/usage.c
modified:   src/Tools/filter/mrc2tiff/src/mrc2tiff.html
modified:   src/Tools/filter/tiff2mrc/src/tiff2mrc.html
modified:   src/Tools/mrcImage/.Source
modified:   src/Tools/mrcImage/.Source.org
modified:   src/Tools/mrcImage/mrcFFTCentralSection/src/mrcFFTCentralSection.html
modified:   src/Tools/mrcImage/mrcFFTCentralSectionCompare/src/mrcFFTCentralSectionCompare.html
modified:   src/Tools/mrcImage/mrcFFTFibreDiagram/src/mrcFFTFibreDiagram.html
modified:   src/Tools/mrcImage/mrcFFTShellInfo/src/mrcFFTShellInfo.html
modified:   src/Tools/mrcImage/mrcFFTplainreduce/src/mrcFFTplainreduce.html
modified:   src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/mrcImage1DProjectionfrom2D.html
modified:   src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/mrcImage1dAverageByCorrelation.html
modified:   src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/mrcImage1dShiftAverageByAnnealing.html
modified:   src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/mrcImage1dShiftByCorrelation.html
modified:   src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/mrcImage3DHighResoEmphasis.html
modified:   src/Tools/mrcImage/mrcImage3DSymmetryFind/src/mrcImage3DSymmetryFind.html
modified:   src/Tools/mrcImage/mrcImageAbnormalValueRemove/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImageAbnormalValueRemove/inc/mrcImageAbnormalValueRemove.h
deleted:    src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/.EosLog.BACKUP.17898.EosLog
deleted:    src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/.EosLog.BASE.17898.EosLog
deleted:    src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/.EosLog.LOCAL.17898.EosLog
deleted:    src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/.EosLog.REMOTE.17898.EosLog
deleted:    src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/.EosLog.orig
modified:   src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/argCheck.c
new file:   src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/gputest.log
modified:   src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/init.c
modified:   src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/mrcImageAbnormalValueRemove.c
modified:   src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/mrcImageAbnormalValueRemove.html
modified:   src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/mrcImageAbnormalValueRemove.pane
modified:   src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/test/Makefile
modified:   src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/usage.c
modified:   src/Tools/mrcImage/mrcImageAddValue/src/mrcImageAddValue.html
modified:   src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/mrcImageAutoCorrelationWithWindowing.html
modified:   src/Tools/mrcImage/mrcImageAutoRotationAverage/src/mrcImageAutoRotationAverage.html
modified:   src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/mrcImageAutoRotationCorrelation3D.html
modified:   src/Tools/mrcImage/mrcImageAverage/src/mrcImageAverage.html
modified:   src/Tools/mrcImage/mrcImageBandPassFilter/src/mrcImageBandPassFilter.html
modified:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/mrcImageBlurByTemperatureFactor.c
modified:   src/Tools/mrcImage/mrcImageChainCodeCalc/src/mrcImageChainCodeCalc.html
modified:   src/Tools/mrcImage/mrcImageClusterAnalysis/src/mrcImageClusterAnalysis.html
modified:   src/Tools/mrcImage/mrcImageCorrelation/src/mrcImageCorrelation.html
modified:   src/Tools/mrcImage/mrcImageCrystalCreate/src/mrcImageCrystalCreate.html
modified:   src/Tools/mrcImage/mrcImageDeconvolution/src/mrcImageDeconvolution.html
modified:   src/Tools/mrcImage/mrcImageDensityInfo/src/mrcImageDensityInfo.html
modified:   src/Tools/mrcImage/mrcImageFFT/src/mrcImageFFT.html
modified:   src/Tools/mrcImage/mrcImageFeatureCalc/src/mrcImageFeatureCalc.html
modified:   src/Tools/mrcImage/mrcImageFilteringbyFile/src/mrcImageFilteringbyFile.html
modified:   src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/mrcImageFilteringbyFileForVariance.html
modified:   src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.html
modified:   src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/mrcImageFourierPowerSpectrum.html
modified:   src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/mrcImageFourierShellCorrelation.html
modified:   src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/mrcImageFractalFourierShellCorrelation.html
modified:   src/Tools/mrcImage/mrcImageGaussSphere/src/mrcImageGaussSphere.html
modified:   src/Tools/mrcImage/mrcImageHighPassFilter/src/mrcImageHighPassFilter.html
modified:   src/Tools/mrcImage/mrcImageLowPassFilter/src/mrcImageLowPassFilter.html
modified:   src/Tools/mrcImage/mrcImageLucasKanade/src/mrcImageLucasKanade.c
modified:   src/Tools/mrcImage/mrcImageModelCreate/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImageModelCreate/inc/mrcImageModelCreate.h
modified:   src/Tools/mrcImage/mrcImageModelCreate/src/argCheck.c
modified:   src/Tools/mrcImage/mrcImageModelCreate/src/init.c
modified:   src/Tools/mrcImage/mrcImageModelCreate/src/mrcImageModelCreate.c
modified:   src/Tools/mrcImage/mrcImageModelCreate/src/mrcImageModelCreate.html
modified:   src/Tools/mrcImage/mrcImageModelCreate/src/mrcImageModelCreate.pane
modified:   src/Tools/mrcImage/mrcImageModelCreate/src/test/Makefile
modified:   src/Tools/mrcImage/mrcImageModelCreate/src/usage.c
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/Config/Define.inc
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/Config/OptionControlFile
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/Config/Target.inc
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/Makefile
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/doc/Makefile
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/inc/config.h
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/inc/mrcImageMovingModelCreate.h
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/.Depend
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/.Source
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/ARM64MAC64
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/Makefile
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/argCheck.c
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/init.c
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/mrcImageMovingModelCreate.c
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/mrcImageMovingModelCreate.html
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/mrcImageMovingModelCreate.pane
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/test/Makefile
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/test/data
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/usage.c
new file:   src/Tools/mrcImage/mrcImageMovingModelCreate/src/util.c
modified:   src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/mrcImageNfoldAxisSearch.html
modified:   src/Tools/mrcImage/mrcImageNoiseCreate/src/mrcImageNoiseCreate.html
modified:   src/Tools/mrcImage/mrcImageNormalizing/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImageNormalizing/inc/mrcImageNormalizing.h
modified:   src/Tools/mrcImage/mrcImageNormalizing/src/argCheck.c
modified:   src/Tools/mrcImage/mrcImageNormalizing/src/init.c
modified:   src/Tools/mrcImage/mrcImageNormalizing/src/mrcImageNormalizing.c
modified:   src/Tools/mrcImage/mrcImageNormalizing/src/mrcImageNormalizing.html
modified:   src/Tools/mrcImage/mrcImageNormalizing/src/mrcImageNormalizing.pane
modified:   src/Tools/mrcImage/mrcImageNormalizing/src/test/Makefile
modified:   src/Tools/mrcImage/mrcImageNormalizing/src/usage.c
modified:   src/Tools/mrcImage/mrcImagePad/src/mrcImagePad.html
modified:   src/Tools/mrcImage/mrcImagePattersonFunctionCalc/src/mrcImagePattersonFunctionCalc.html
modified:   src/Tools/mrcImage/mrcImagePerimeterCalc/src/mrcImagePerimeterCalc.html
modified:   src/Tools/mrcImage/mrcImagePixelDataGet/src/mrcImagePixelDataGet.html
modified:   src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/mrcImageResolutionEstimateForFilaments.html
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/Config/Define.inc
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/Config/OptionControlFile
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/Config/Target.inc
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/Makefile
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/doc/Makefile
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/inc/config.h
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/inc/mrcImageSeriesNormalizing.h
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/.Depend
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/.Source
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/ARM64MAC64
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/Makefile
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/argCheck.c
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/init.c
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/mrcImageSeriesNormalizing.c
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/mrcImageSeriesNormalizing.html
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/mrcImageSeriesNormalizing.pane
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/test/Makefile
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/test/data
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/test/test.init
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/usage.c
new file:   src/Tools/mrcImage/mrcImageSeriesNormalizing/src/util.c
modified:   src/Tools/mrcImage/mrcImageSinogramFFT/src/mrcImageSinogramFFT.html
modified:   src/Tools/mrcImage/mrcImageSuperResolution/src/mrcImageSuperResolution.html
modified:   src/Tools/mrcImage/mrcImageSurfaceAreaCalc/src/mrcImageSurfaceAreaCalc.html
modified:   src/Tools/mrcImage/mrcImageSymmetryAverage/src/mrcImageSymmetryAverage.html
modified:   src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/mrcImageSymmetryCentreFind.html
modified:   src/Tools/mrcImage/mrcImageSymmetryFind/src/mrcImageSymmetryFind.html
modified:   src/Tools/mrcImage/mrcImageTiltAxisSearch/src/mrcImageTiltAxisSearch.html
modified:   src/Tools/mrcImage/mrcImageTrans/src/mrcImageTrans.html
modified:   src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/mrcImageTransformDescartesIntoPolar.html
modified:   src/Tools/mrcImage/mrcMask/src/mrcMask.html
modified:   src/Tools/mrcImage/mrcRefFFTConvert/src/mrcRefFFTConvert.html
modified:   src/Tools/mrcImage/mrcRefHighPassFilter/src/mrcRefHighPassFilter.html
modified:   src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/mrcRefImagepwzCorPeakFind.html
modified:   src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/mrcRefImagepwzCorSmoothing.html
modified:   src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/mrcRefImagepwzCorrelation.html
modified:   src/Tools/mrcImage/mrcRefLowPassFilter/src/mrcRefLowPassFilter.html
modified:   src/Tools/mrcImage/mrcRefPhaseImageCreate/src/mrcRefPhaseImageCreate.html
modified:   src/Tools/mrcImage/mrcRefz1ImageCorrelation/src/mrcRefz1ImageCorrelation.html
modified:   src/Tools/mrcImage/mrcSinogramFETcalcWeight/src/mrcSinogramFETcalcWeight.html
modified:   src/Tools/pdbUtil/pdbMove/src/pdbMove.c
modified:   src/Tools/pdbUtil/pdbMove/src/pdbMove.html
modified:   src/Tools/tiffFileUtil/tiffFileInfo/src/tiffFileInfo.html
deleted:    util/ALPHA
deleted:    util/ALPHALINU5
deleted:    util/ALPHALINUX
deleted:    util/ALPHALINUX5
deleted:    util/ALPHAOSF1
modified:   util/ARM64MAC64
deleted:    util/CELLLINUX64
deleted:    util/HP
modified:   util/src/DataFormat/Makefile
modified:   util/src/Graphics/Makefile
modified:   util/src/MATH/Makefile
modified:   util/src/TclTk/Makefile
src/Tools/filter/mrc2hdf/src/mrc2hdf.c