OSDN Git Service

String.h -> eosString.h for OSX v2.3.50p0274
authorTakuo Yasunaga <yasunaga@bio.kyutech.ac.jp>
Tue, 28 Feb 2017 21:29:54 +0000 (06:29 +0900)
committerTakuo Yasunaga <yasunaga@bio.kyutech.ac.jp>
Tue, 28 Feb 2017 21:29:54 +0000 (06:29 +0900)
commit222f9e973b44edadb70b4dc01e3871168fa983fa
tree36e4a06f331bc5db462ab9672cfa7db49be93255
parent5f067dd8f6228bae3a6b8256400e4339130cf9d8
String.h -> eosString.h for OSX

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 On branch master
 Changes to be committed:
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modified:   .Source.org
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modified:   bin/wish/ctfDisplay/tclIndex
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renamed:    src/Objects/General/String/inc/Makefile -> src/Objects/General/eosString/inc/Makefile
renamed:    include/String.h -> src/Objects/General/eosString/inc/eosString.h
renamed:    src/Objects/General/String/src/.CCHeader -> src/Objects/General/eosString/src/.CCHeader
renamed:    src/Objects/General/String/src/.CHeader -> src/Objects/General/eosString/src/.CHeader
renamed:    src/Objects/General/String/src/.Ruby -> src/Objects/General/eosString/src/.Ruby
renamed:    src/Objects/General/String/src/.Source.tmp -> src/Objects/General/eosString/src/.Source.tmp
renamed:    src/Objects/General/String/src/.Wish -> src/Objects/General/eosString/src/.Wish
renamed:    src/Objects/General/String/src/ALPHA -> src/Objects/General/eosString/src/ALPHA
renamed:    src/Objects/General/String/src/ALPHALINUX -> src/Objects/General/eosString/src/ALPHALINUX
renamed:    src/Objects/General/String/src/ALPHALINUX5 -> src/Objects/General/eosString/src/ALPHALINUX5
renamed:    src/Objects/General/String/src/ALPHAOSF1 -> src/Objects/General/eosString/src/ALPHAOSF1
renamed:    src/Objects/General/String/src/CELLLINUX64 -> src/Objects/General/eosString/src/CELLLINUX64
renamed:    src/Objects/General/String/src/HP -> src/Objects/General/eosString/src/HP
renamed:    src/Objects/General/String/src/I386LINUX -> src/Objects/General/eosString/src/I386LINUX
renamed:    src/Objects/General/String/src/I686LINUX -> src/Objects/General/eosString/src/I686LINUX
renamed:    src/Objects/General/String/src/Makefile -> src/Objects/General/eosString/src/Makefile
renamed:    src/Objects/General/String/src/SGI -> src/Objects/General/eosString/src/SGI
renamed:    src/Objects/General/String/src/SPARC -> src/Objects/General/eosString/src/SPARC
renamed:    src/Objects/General/String/src/X86LINUX64 -> src/Objects/General/eosString/src/X86LINUX64
renamed:    src/Objects/General/String/src/X86LINUX64ICC -> src/Objects/General/eosString/src/X86LINUX64ICC
renamed:    src/Objects/General/String/src/X86MAC64 -> src/Objects/General/eosString/src/X86MAC64
renamed:    src/Objects/General/String/src/stringGet.c -> src/Objects/General/eosString/src/stringGet.c
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renamed:    src/Objects/General/String/src/stringIsSame.c -> src/Objects/General/eosString/src/stringIsSame.c
renamed:    src/Objects/General/String/src/stringIsSame.c.org -> src/Objects/General/eosString/src/stringIsSame.c.org
renamed:    src/Objects/General/String/src/stringUtil.c -> src/Objects/General/eosString/src/stringUtil.c
renamed:    src/Objects/General/String/src/stringUtil.c.org -> src/Objects/General/eosString/src/stringUtil.c.org
modified:   src/Objects/MachineManip/hf2000/src/hf2000Init.c
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modified:   src/Tools/Cluster/clusterLog2ToLog/src/Makefile
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modified:   src/Tools/Cluster/clusterLogASCII2Binary/src/Makefile
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modified:   src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/Makefile
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