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(parent: 001594f) | patch
Install Cuda
authorTakuo Yasunaga <yasunaga@bio.kyutech.ac.jp>
Wed, 23 Apr 2014 13:43:12 +0000 (22:43 +0900)
committerTakuo Yasunaga <yasunaga@bio.kyutech.ac.jp>
Wed, 23 Apr 2014 13:43:12 +0000 (22:43 +0900)
commit57b27d4417d4fc7b189e3da9e1c25d15e102e22a
tree4941766697f9cc9267caf4a3b232c5a4bf8a7f90tree | snapshot
parent001594fee609dc7fa3ed85f375fa9624df87aa7bcommit | diff
Install Cuda
new file:   hostdepend/X86LINUX64/util/X86LINUX64/cuda
Install ICC
new file:   hostdepend/X86LINUX64ICC/include/*.h
modified:   hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libEosObjects.a
Modify eosCuda
modified:   include/eosCuda.h
modified:   src/Objects/General/eosCuda/Config/Define.inc
modified:   src/Objects/General/eosCuda/inc/eosCuda.h
new file:   src/Objects/General/eosCuda/src/eosCuda.cu

Modify Configuration Files  for ICC and CUDA
modified:   include/pdbFile.h
modified:   src/Config/DefineObject.inc
modified:   src/Config/Template/ObjectsTemplate.Dir/src/ARCH/Makefile
modified:   src/Config/x86Linux64icc.inc
modified:   src/Objects/DataManip/Config/Define.inc
modified:   src/Tools/Config/Define.inc

Examples for CUDA Applications:
modified:   src/Tools/mrcImage/mrcImageAddValue/*
modified:   src/Tools/pdbUtil/pdbRotation/*
modified:   src/Objects/DataManip/pdbFile/src/pdbTrans.c
new file:   src/Objects/DataManip/pdbFile/src/pdbTransCuda.cu
340 files changed:
hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/.Depend diff | blob | history
hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/.Source diff | blob | history
hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.a diff | blob | history
hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.debug.a diff | blob | history
hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageAddValue.cu [new symlink] blob
hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageAddValue.sharedo diff | blob | history
hostdepend/X86LINUX64/util/X86LINUX64/cuda [new symlink] blob
hostdepend/X86LINUX64ICC/bin/X86LINUX64ICC/mrcImageAddValue diff | blob | history
hostdepend/X86LINUX64ICC/bin/X86LINUX64ICC/pdbRotation diff | blob | history
hostdepend/X86LINUX64ICC/include/fftn.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcFETnormalizeBySD.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcFFTExpression.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcFFTInfo.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImage3DWindowing.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageAddValue.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageAsProbability.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageAverage.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageBilateralFilter.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageBinarization.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageBoundaryInfo.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageCTFCompensation.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageCTFDetermination.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageCalcArea.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageCentre.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageClusterAnalysis.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageCommonLine.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageConnection.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageConnectivityNumberCalc.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageContourSurface.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageContraction.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageCorrelation.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageCrystalCreate.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageDataMaxAndMinGetByImage.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageDataStraightCopy.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageDensity.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageDensityInverse.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageDensityNormalizationByImage.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageDistanceConversion.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageEdge.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageEdgeAverage.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageFOMCalc.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageFeatureExtraction.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageFilterCreate.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageFirstNoiseReductionByRelaxation.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageFourierShellCorrelation.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageLabeling.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageMasking.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageMirroring.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageModeChange.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageModelCreate.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageMontage.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageMorphology.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageMove.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageMultiplying.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageNormalizing.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageOneLineSimilarityCalc.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImagePad.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImagePartImageSegmentation.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImagePixelSummationOfProbabilityGetByImage.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImagePosterization.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImagePrint.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageProjection.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageProportionalDensityLevelSetByImage.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageROI2D.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageROI3D.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageRadialDistribution.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageRhoFiltering.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSSDA.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSamplingUnitChange.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSecondNoiseReductionByRelaxation.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSecondNoiseReductionByRelaxationDijDimensionSet.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSecondNoiseReductionByRelaxationDijValueSet.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSecondNoiseReductionByRelaxationQValueSet.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSecondNoiseReductionByRelaxationRValueSet.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageShapePCA.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSigmaCalculate.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSinogram.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSinogramFFT.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSolventFlattening.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSphere.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSplit.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageStudentCalculate.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSubtractionCalc.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSummationCalculate.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageSymmetryFind.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageTransformDescartesIntoPolar.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageTriming.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageVolumeCalc.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImageWindowing.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcImagesStatDataGet.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcSinogramFET.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcSinogramFETcalcWeight.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcSinogramFETcorrelationMap.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcSinogramFETnormalizedMap.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcSinogramFETreferredCorrelation.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lmrcSinogramFETsmoothParameterMatching.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lpdb2mrcInfo.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lpdbCoord.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lpdbCoordInfo.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lpdbSelectedAtom.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/lpdbSurface.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/mrcImagePVM.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/mrcImagefuncmin.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/include/pdbInfoGet.h [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libContour.debug.a [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libEosObjects.a diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libEosObjects.debug.a [new file with mode: 0644] blob
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hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libFile.debug.a [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libMemory.debug.a [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libString.debug.a [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libeosCuda.a diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libeosCuda.debug.a [new file with mode: 0644] blob
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hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libmrcImage.a diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libmrcImage.debug.a [new file with mode: 0644] blob
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hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libpdbFile.so diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/libpsFile.debug.a [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/eosCuda.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcFETnormalizeBySD.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcFFTFGconj.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcFFTFxG.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageAddValue.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageAddValueCuda.sharedo [new file with mode: 0644] blob
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageAverage.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageBinarization.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageCTFDetermination.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageCTFObservation.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageCTFSN.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageCVE.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageCentre.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageClosing.sharedo diff | blob | history
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hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageCorrelation.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageCorrelationWithCTFCompensation.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageDensity.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageFFT.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageFOMCalc.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageFeatureExtractionCoOccurrence.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageFeatureExtractionRunLength.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageFirstNoiseReductionByRelaxation.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageFourierPowerSpectrum.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageFourierShellCorrelation.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageHighPassFilter.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageLowPassFilter.sharedo diff | blob | history
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hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageMultiCTFCompensation.sharedo diff | blob | history
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hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageROInotChangeHeaderLength.sharedo diff | blob | history
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hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageSecondNoiseReductionByRelaxationQValueSet.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageShift.sharedo diff | blob | history
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hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageSinogramCorrelation.sharedo diff | blob | history
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hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImageTransformDescartesIntoPolar.sharedo diff | blob | history
hostdepend/X86LINUX64ICC/lib/X86LINUX64ICC/shared/lmrcImagesFTest.sharedo diff | blob | history
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