--- /dev/null
+../sbin/MachineIndependent
\ No newline at end of file
X86MAC64/lmrcImageFeatureExtractionRunLength.o:lmrcImageFeatureExtractionRunLength.o
X86MAC64/lmrcImageFilterCreate.o:lmrcImageFilterCreate.o
X86MAC64/lmrcImageFirstNoiseReductionByRelaxation.o:lmrcImageFirstNoiseReductionByRelaxation.o
+X86MAC64/lmrcImageFloating.o:lmrcImageFloating.o
X86MAC64/lmrcImageFourierPowerSpectrum.o:lmrcImageFourierPowerSpectrum.o
X86MAC64/lmrcImageFourierShellCorrelation.o:lmrcImageFourierShellCorrelation.o
X86MAC64/lmrcImageHighPassFilter.o:lmrcImageHighPassFilter.o
lmrcImageFeatureExtractionRunLength.c \
lmrcImageFilterCreate.c \
lmrcImageFirstNoiseReductionByRelaxation.c \
+lmrcImageFloating.c \
lmrcImageFourierPowerSpectrum.c \
lmrcImageFourierShellCorrelation.c \
lmrcImageHighPassFilter.c \
lmrcImageFeatureExtractionRunLength.o \
lmrcImageFilterCreate.o \
lmrcImageFirstNoiseReductionByRelaxation.o \
+lmrcImageFloating.o \
lmrcImageFourierPowerSpectrum.o \
lmrcImageFourierShellCorrelation.o \
lmrcImageHighPassFilter.o \
lmrcImageFeatureExtractionRunLength.sharedo \
lmrcImageFilterCreate.sharedo \
lmrcImageFirstNoiseReductionByRelaxation.sharedo \
+lmrcImageFloating.sharedo \
lmrcImageFourierPowerSpectrum.sharedo \
lmrcImageFourierShellCorrelation.sharedo \
lmrcImageHighPassFilter.sharedo \
X86MAC64/lmrcImageFeatureExtractionRunLength.o \
X86MAC64/lmrcImageFilterCreate.o \
X86MAC64/lmrcImageFirstNoiseReductionByRelaxation.o \
+X86MAC64/lmrcImageFloating.o \
X86MAC64/lmrcImageFourierPowerSpectrum.o \
X86MAC64/lmrcImageFourierShellCorrelation.o \
X86MAC64/lmrcImageHighPassFilter.o \
X86MAC64/lmrcImageFeatureExtractionRunLength.sharedo \
X86MAC64/lmrcImageFilterCreate.sharedo \
X86MAC64/lmrcImageFirstNoiseReductionByRelaxation.sharedo \
+X86MAC64/lmrcImageFloating.sharedo \
X86MAC64/lmrcImageFourierPowerSpectrum.sharedo \
X86MAC64/lmrcImageFourierShellCorrelation.sharedo \
X86MAC64/lmrcImageHighPassFilter.sharedo \
lmrcImageFeatureExtractionRunLength.debugo \
lmrcImageFilterCreate.debugo \
lmrcImageFirstNoiseReductionByRelaxation.debugo \
+lmrcImageFloating.debugo \
lmrcImageFourierPowerSpectrum.debugo \
lmrcImageFourierShellCorrelation.debugo \
lmrcImageHighPassFilter.debugo \
X86MAC64/lmrcImageFeatureExtractionRunLength.debugo \
X86MAC64/lmrcImageFilterCreate.debugo \
X86MAC64/lmrcImageFirstNoiseReductionByRelaxation.debugo \
+X86MAC64/lmrcImageFloating.debugo \
X86MAC64/lmrcImageFourierPowerSpectrum.debugo \
X86MAC64/lmrcImageFourierShellCorrelation.debugo \
X86MAC64/lmrcImageHighPassFilter.debugo \
lmrcImageFeatureExtractionRunLength.cudagdb.o \
lmrcImageFilterCreate.cudagdb.o \
lmrcImageFirstNoiseReductionByRelaxation.cudagdb.o \
+lmrcImageFloating.cudagdb.o \
lmrcImageFourierPowerSpectrum.cudagdb.o \
lmrcImageFourierShellCorrelation.cudagdb.o \
lmrcImageHighPassFilter.cudagdb.o \
X86MAC64/lmrcImageFeatureExtractionRunLength.cudagdb.o \
X86MAC64/lmrcImageFilterCreate.cudagdb.o \
X86MAC64/lmrcImageFirstNoiseReductionByRelaxation.cudagdb.o \
+X86MAC64/lmrcImageFloating.cudagdb.o \
X86MAC64/lmrcImageFourierPowerSpectrum.cudagdb.o \
X86MAC64/lmrcImageFourierShellCorrelation.cudagdb.o \
X86MAC64/lmrcImageHighPassFilter.cudagdb.o \
$(SHAREDLIB): $(SHAREDOBJ)
@COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ}; echo "################"; \
- $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}
+ COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND}
debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
--- /dev/null
+../lmrcImageFloating.c
\ No newline at end of file
--- /dev/null
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/mrcImageFloating.h /Users/tacyas/Eos/include/genUtil.h \
+ /Users/tacyas/Eos/include/File.h /Users/tacyas/Eos/include/Memory.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
+ /usr/include/limits.h /usr/include/machine/limits.h \
+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+ /usr/include/sys/syslimits.h
+init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/mrcImageFloating.h /Users/tacyas/Eos/include/genUtil.h \
+ /Users/tacyas/Eos/include/File.h /Users/tacyas/Eos/include/Memory.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
+ /usr/include/limits.h /usr/include/machine/limits.h \
+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+ /usr/include/sys/syslimits.h
+mrcImageFloating.o: mrcImageFloating.c /usr/include/stdio.h \
+ /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/mrcImageFloating.h /Users/tacyas/Eos/include/genUtil.h \
+ /Users/tacyas/Eos/include/mrcImage.h \
+ /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
+ /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
+ /Users/tacyas/Eos/include/lmrcImageFloating.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ ../inc/config.h ../inc/../inc/mrcImageFloating.h
+util.o: util.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ ../inc/config.h ../inc/../inc/mrcImageFloating.h
--- /dev/null
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo
+
+MODULESCUDAGDB = \
+ $(OBJECTNAME).cudagdb.o \
+ init.cudagdb.o \
+ argCheck.cudagdb.o \
+ usage.cudagdb.o \
+ util.cudagdb.o
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+ @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+ then \
+ echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+ then \
+ echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+ then \
+ echo "MICO"; \
+ echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+ then \
+ echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ; \
+ $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ; \
+ fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+ @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+ then \
+ echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+ then \
+ echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+ then \
+ echo "MICO"; \
+ echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+ then \
+ echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+ echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+ $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageFloating/src/X86MAC64
\ No newline at end of file
--- /dev/null
+/*
+# lmrcImageFloating.h : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : lmrcImageFloating.h
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+/* $Log$ */
+#ifndef LMRCIMAGE_FLOATHING_H
+#define LMRCIMAGE_FLOATHING_H
+
+#include <stdio.h>
+#include "mrcImage.h"
+
+/* constant begin */
+typedef enum lmrcImageFloatingMode {
+ lmrcImageFloatingModeAllMean = 0,
+ lmrcImageFloatingModeSphereSurfaceMean = 1,
+ lmrcImageFloatingModeCylinderSurfaceMean = 2,
+ lmrcImageFloatingModeEdgePixel = 3
+} lmrcImageLFloatingMode;
+
+/* constant end */
+
+/* struct begin */
+typedef struct lmrcImageFloatingInfo {
+ // Input
+ double value; /* to Floating Value */
+
+ // Output
+ mrcImageInformation info;
+} lmrcImageFloatingInfo;
+
+/* struct end */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* prototype begin */
+
+void lmrcImageFloatingModePrint(FILE* fpt);
+void lmrcImageFloating(mrcImage* out, mrcImage* in, lmrcImageFloatingInfo* linfo, int mode);
+
+/* prototype end */
+
+#ifdef __cplusplus
+};
+#endif
+
+#endif /* XXXX */
<H2>Information from source codes</H2>
</A>
<PRE>
-../src/fftn.c:
-
-../src/lmrcFETnormalizeBySD.c:
-
-../src/lmrcFFTExpression.c:
-
-../src/lmrcFFTFGconj.c:
-
-../src/lmrcFFTFxG.c:
-
-../src/lmrcFFTInfo.c:
-
-../src/lmrcImage3DPad.c:
-
-../src/lmrcImage3DWindowing.c:
-
-../src/lmrcImageAddValue.c:
-
-../src/lmrcImageAsProbability.c:
-
-../src/lmrcImageAverage.c:
-
-../src/lmrcImageBandPassFilter.c:
-
-../src/lmrcImageBilateralFilter.c:
-
-../src/lmrcImageBinarization.c:
-
-../src/lmrcImageBottomHatTransform.c:
-
-../src/lmrcImageBoundaryInfo.c:
-
-../src/lmrcImageCTFCompensation.c:
-
-../src/lmrcImageCTFDetermination.c:
-
-../src/lmrcImageCTFObservation.c:
-
-../src/lmrcImageCTFSN.c:
-
-../src/lmrcImageCVE.c:
-
-../src/lmrcImageCalcArea.c:
-
-../src/lmrcImageCenterGet.c:
-
-../src/lmrcImageCentre.c:
-
-../src/lmrcImageClosing.c:
-
-../src/lmrcImageClusterAnalysis.c:
-
-../src/lmrcImageCommonLine.c:
-
-../src/lmrcImageConnection.c:
-
-../src/lmrcImageConnectivityNumberCalc.c:
-
-../src/lmrcImageContourSurface.c:
-
-../src/lmrcImageContraction.c:
-
-../src/lmrcImageCorrelation.c:
- $lmrcImageEuclidDistanceCalc: Calculate Euclid distance between two images $
- $arg: in1: input mrcImage1 $
- $arg: in2: input mrcImage2 $
- $arg: mode: input int $
- $mode: 0 Sum of SQR $
- $mode: 1 Distance $
- $return: EuclidDistance $
-
-../src/lmrcImageCorrelationPVM.c:
-
-../src/lmrcImageCorrelationWithCTFCompensation.c:
-
-../src/lmrcImageCorrelationinSpace.c:
-
-../src/lmrcImageCrystalCreate.c:
-
-../src/lmrcImageDataMaxAndMinGetByImage.c:
-
-../src/lmrcImageDataStraightCopy.c:
-
-../src/lmrcImageDeconvolution.c:
-
-../src/lmrcImageDensity.c:
-
-../src/lmrcImageDensityInverse.c:
-
-../src/lmrcImageDensityNormalizationByImage.c:
-
-../src/lmrcImageDilation.c:
-
-../src/lmrcImageDistanceConversion.c:
-
-../src/lmrcImageEdge.c:
-
-../src/lmrcImageEdgeAverage.c:
-
-../src/lmrcImageEdgeEnhancement.c:
-
-../src/lmrcImageErosion.c:
-
-../src/lmrcImageFFT.c:
-
-../src/lmrcImageFOMCalc.c:
-
-../src/lmrcImageFeatureExtraction.c:
-
-../src/lmrcImageFeatureExtractionCoOccurrence.c:
-
-../src/lmrcImageFeatureExtractionRunLength.c:
-
-../src/lmrcImageFilterCreate.c:
-
-../src/lmrcImageFirstNoiseReductionByRelaxation.c:
-
-../src/lmrcImageFourierPowerSpectrum.c:
-
-../src/lmrcImageFourierShellCorrelation.c:
-
-../src/lmrcImageHighPassFilter.c:
-
-../src/lmrcImageHighlighting.c:
-
-../src/lmrcImageLabeling.c:
-
-../src/lmrcImageLogicalOperation.c:
-
-../src/lmrcImageLowPassFilter.c:
-
-../src/lmrcImageMasking.c:
-
-../src/lmrcImageMaxDataGet.c:
-
-../src/lmrcImageMirroring.c:
- $lmrcImageMirroring: (mrcImage* out, mrcImage* in, lmrcImageMirroring mode) $
-
-../src/lmrcImageModeChange.c:
-
-../src/lmrcImageModelCreate.c:
-
-../src/lmrcImageMontageCreate.c:
-
-../src/lmrcImageMorphology.c:
-
-../src/lmrcImageMove.c:
-
-../src/lmrcImageMultiCTFCompensation.c:
-
-../src/lmrcImageMultiplying.c:
-
-../src/lmrcImageNormalizing.c:
-
-../src/lmrcImageOneLineSimilarityCalc.c:
-
-../src/lmrcImageOpening.c:
-
-../src/lmrcImagePad.c:
-
-../src/lmrcImagePartImageSegmentation.c:
-
-../src/lmrcImagePixelSummationOfProbabilityGetByImage.c:
-
-../src/lmrcImagePosterization.c:
-
-../src/lmrcImagePrevitt.c:
-
-../src/lmrcImageProjection.c:
-
-../src/lmrcImageProportionalDensityLevelSetByImage.c:
-
-../src/lmrcImageROI2D.c:
-
-../src/lmrcImageROI3D.c:
-
-../src/lmrcImageROInotChangeHeaderLength.c:
-
-../src/lmrcImageRadialDistribution.c:
-
-../src/lmrcImageRhoFiltering.c:
-
-../src/lmrcImageRoberts.c:
-
-../src/lmrcImageRotation.c:
-
-../src/lmrcImageSSDA.c:
-
-../src/lmrcImageSamplingUnitChange.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxation.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxationDijDimensionSet.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxationDijValueSet.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxationQValueSet.c:
-
-../src/lmrcImageSecondNoiseReductionByRelaxationRValueSet.c:
-
-../src/lmrcImageShapePCA.c:
-
-../src/lmrcImageShift.c:
-
-../src/lmrcImageShrink.c:
-
-../src/lmrcImageSigmaCalculate.c:
-
-../src/lmrcImageSinogram.c:
-
-../src/lmrcImageSinogramCorrelation.c:
-
-../src/lmrcImageSinogramFFT.c:
-
-../src/lmrcImageSmoothing.c:
-
-../src/lmrcImageSobel.c:
-
-../src/lmrcImageSolventFlattening.c:
-
-../src/lmrcImageSphere.c:
-
-../src/lmrcImageSplit.c:
-
-../src/lmrcImageStudentCalculate.c:
-
-../src/lmrcImageSubtractionCalc.c:
-
-../src/lmrcImageSummationCalculate.c:
-
-../src/lmrcImageSymmetryFind.c:
-
-../src/lmrcImageTfunction.c:
-
-../src/lmrcImageTopHatTransform.c:
-
-../src/lmrcImageTrans.c:
-
-../src/lmrcImageTransformDescartesIntoPolar.c:
-
-../src/lmrcImageTriming.c:
-
-../src/lmrcImageVolumeCalc.c:
-
-../src/lmrcImageWindowing.c:
-
-../src/lmrcImagesFTest.c:
-
-../src/lmrcImagesStatDataGet.c:
-
-../src/lmrcImagesTTest.c:
-
-../src/lmrcImagesVarianceAnalysis.c:
-
-../src/lmrcImagesVarianceMap.c:
-
-../src/lmrcSinogramFET.c:
-
-../src/lmrcSinogramFETPCA.c:
-
-../src/lmrcSinogramFETcalcWeight.c:
-
-../src/lmrcSinogramFETcorrelationMap.c:
-
-../src/lmrcSinogramFETnormalizedMap.c:
-
-../src/lmrcSinogramFETreferredCorrelation.c:
-
-../src/lmrcSinogramFETsmoothParameterMatching.c:
-
-../src/mrcImageCheckFFT.c:
-
-../src/mrcImageCheckSameSize.c:
-
-../src/mrcImageCopy.c:
-
-../src/mrcImageDataSet.c:
-
-../src/mrcImageError.c:
-
-../src/mrcImageGet.c:
-
-../src/mrcImageInfo.c:
-
-../src/mrcImageInit.c:
-
-../src/mrcImageOperation.c:
-
-../src/mrcImagePVM.c:
-
-../src/mrcImagePrint.c:
-
-../src/mrcImageRead.c:
-
-../src/mrcImageSectionGet.c:
-
-../src/mrcImageSectionSet.c:
-
-../src/mrcImageSet.c:
-
-../src/mrcImageTailer.c:
-
-../src/mrcImageToIntImage.c:
-
-../src/mrcImageUtil.c:
-
-../src/mrcImageUtilityforVariance.c:
-
-../src/mrcImageWrite.c:
-
-../src/mrcImageWrite2.c:
-
-../src/mrcImagefuncmin.c:
-
-../src/mrcRefUtil.c:
</PRE>
<HR>
<A NAME="include">
lmrcImageFeatureExtraction.h \
lmrcImageFilterCreate.h \
lmrcImageFirstNoiseReductionByRelaxation.h \
+lmrcImageFloating.h \
lmrcImageFourierShellCorrelation.h \
lmrcImageLabeling.h \
lmrcImageLogic.h \
--- /dev/null
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lmrcImageFloating ver %I%
+#%Z% Created by
+#%Z%
+#%Z% Usage : lmrcImageFloating
+#%Z% Attention
+#%Z%
+*/
+static char __sccs_id[] = "%Z%lmrcImageFloating ver%I%; Date:%D% %Z%";
+
+#include <stdio.h>
+#include <stdlib.h>
+
+#include "./lmrcImageFloating.h"
+
+void
+lmrcImageFloatingModePrint(FILE* fpt)
+{
+ fprintf(fpt, ">>> Edge Mode 0xf&mode\n");
+ fprintf(fpt, "All Mean: %d\n", lmrcImageFloatingModeAllMean);
+ fprintf(fpt, "Sphere Surface Mean (rmax): %d\n", lmrcImageFloatingModeSphereSurfaceMean);
+ fprintf(fpt, "Cylinder Surface Mean (rmax): %d\n", lmrcImageFloatingModeCylinderSurfaceMean);
+ fprintf(fpt, "Edge Pixels: %d\n", lmrcImageFloatingModeEdgePixel);
+}
+
+void
+lmrcImageFloating(mrcImage* out, mrcImage* in, lmrcImageFloatingInfo* linfo, int mode)
+{
+ double data, offset;
+ mrcImageParaTypeReal x, y, z;
+
+ out->Header.Cont = in->Header.Cont;
+ mrcInit(out, NULL);
+
+ linfo->info.mode = 0xf&mode;
+ lmrcImageInformation(&(linfo->info), in);
+
+ switch(mode) {
+ case lmrcImageFloatingModeAllMean:
+ offset = linfo->info.mean;
+ break;
+ case lmrcImageFloatingModeSphereSurfaceMean:
+ offset = linfo->info.meanOfSphereSurface;
+ break;
+ case lmrcImageFloatingModeCylinderSurfaceMean:
+ offset = linfo->info.meanOfCylinderSurface;
+ break;
+ case lmrcImageFloatingModeEdgePixel:
+ offset = linfo->info.meanOfEdge;
+ break;
+ default: {
+ fprintf(stderr, "Not supported mode: %d\n", mode);
+ exit(EXIT_FAILURE);
+ }
+ }
+
+ for(z=0; z<in->HeaderN.z; z++) {
+ for(y=0; y<in->HeaderN.y; y++) {
+ for(x=0; x<in->HeaderN.x; x++) {
+ mrcPixelDataGet(in, x, y, z, &data, mrcPixelRePart, mrcPixelHowNearest);
+ data = data - offset + linfo->value;
+ mrcPixelDataSet(out, x, y, z, data, mrcPixelRePart);
+ }
+ }
+ }
+}
+
--- /dev/null
+/*
+# lmrcImageFloating.h : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : lmrcImageFloating.h
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+/* $Log$ */
+#ifndef LMRCIMAGE_FLOATHING_H
+#define LMRCIMAGE_FLOATHING_H
+
+#include <stdio.h>
+#include "mrcImage.h"
+
+/* constant begin */
+typedef enum lmrcImageFloatingMode {
+ lmrcImageFloatingModeAllMean = 0,
+ lmrcImageFloatingModeSphereSurfaceMean = 1,
+ lmrcImageFloatingModeCylinderSurfaceMean = 2,
+ lmrcImageFloatingModeEdgePixel = 3
+} lmrcImageLFloatingMode;
+
+/* constant end */
+
+/* struct begin */
+typedef struct lmrcImageFloatingInfo {
+ // Input
+ double value; /* to Floating Value */
+
+ // Output
+ mrcImageInformation info;
+} lmrcImageFloatingInfo;
+
+/* struct end */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* prototype begin */
+
+void lmrcImageFloatingModePrint(FILE* fpt);
+void lmrcImageFloating(mrcImage* out, mrcImage* in, lmrcImageFloatingInfo* linfo, int mode);
+
+/* prototype end */
+
+#ifdef __cplusplus
+};
+#endif
+
+#endif /* XXXX */
WORLDNAME=Tools
WORLDNAME=Tools
WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
mrcImageFilterCreate \
mrcImageFilteringbyFile \
mrcImageFilteringbyFileForVariance \
+mrcImageFloating \
mrcImageFourierPowerSpectrum \
mrcImageFourierShellCorrelation \
mrcImageFractalFourierShellCorrelation \
+++ /dev/null
-include ../../Config/Define.inc
-include ../Config/Define.inc
-include Config/Define.inc
-include .Source
-
-all:
- for dir in ${SOURCE} ; \
- do \
- if [ -d $${dir} ] ; then \
- $(CD) $${dir}; make all; $(CD) ..; \
- fi \
- done
-
-install:
- for dir in ${SOURCE} ; \
- do \
- if [ -d $${dir} ] ; then \
- $(CD) $${dir}; make install; $(CD) ..; \
- fi \
- done
-
-put:
- for dir in ${SOURCE} ; \
- do \
- if [ -d $${dir} ] ; then \
- $(CD) $${dir}; make put; $(CD) ..; \
- fi \
- done
-
-putSF:
- if [ -f private ] ; then \
- echo "$(WORLDNAME)/$(CLASSNAME) is private " ; \
- else \
- for dir in ${SOURCE} ; \
- do \
- if [ -d $${dir} ] ; then \
- $(CD) $${dir}; make putSF; $(CD) ..; \
- fi \
- done \
- fi
-
-clean:
- for dir in ${SOURCE} ; \
- do \
- $(CD) $${dir}; make clean; $(CD) ..; \
- done
-
-check:
- @for dir in ${SOURCE} ; do \
- if [ -d $${dir} ] ; then \
- $(CD) $${dir}; \
- echo $${dir}; \
- $(RM) Makefile; \
- $(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/Makefile Makefile ; \
- make check; \
- $(CD) ..; \
- fi \
- done
-
-depend: check
- @for dir in ${SOURCE} ; \
- do \
- $(CD) $${dir}; make depend; $(CD) ..; \
- done
-
-backup:
- cd ../../..; \
- tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/Config; \
- tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/Makefile; \
- tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/.[A-z]*
- tar uvf ${EOS_HOME}/backup/EosBase.tar .[A-z]*
- @for dir in ${SOURCE} ; \
- do \
- $(CD) $${dir}; make backup; $(CD) ..; \
- done
-
-backup-all:
- cd ../../..; \
- tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/Config; \
- tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/Makefile; \
- tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/.[A-z]*
- tar rvf ${EOS_HOME}/backup/EosBase.tar .[A-z]*
- @for dir in ${SOURCE} ; \
- do \
- $(CD) $${dir}; make backup; $(CD) ..; \
- done
-
-distribute:
- cd ../../..; \
- tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/Config; \
- tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/Makefile; \
- tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/.[A-z]*
- @for dir in ${SOURCE} ; \
- do \
- $(CD) $${dir}; make distribute; $(CD) ..; \
- done
-
-distribute-all:
- cd ../../..; \
- tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/Config; \
- tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/Makefile; \
- tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/.[A-z]*
- @for dir in ${SOURCE} ; \
- do \
- $(CD) $${dir}; make distribute-all; $(CD) ..; \
- done
-
--- /dev/null
+/Users/tacyas/Eos/src/Config/Template/ToolsClassTemplate.Dir/Makefile
\ No newline at end of file
--- /dev/null
+OBJECTNAME = mrcImageFloating
+EXTRA_LIB =
+EXTRA_CCOPTS =
+EXTRA_INC =
--- /dev/null
+# OptionControlFile
+# FileFormat
+"-i","-i[nput]","Input: mrcImage","Essential","1","1","In","inFile::mrcImage","NULL"
+"-o","-o[utput]","Output: mrcImage","Essential","1","1","Out","outFile::mrcImage","NULL"
+"-v","-v[alue]","Input: value","Optional","1","1","Value","Real","0.0"
+"-rmax","-rmax","Input: default: rmax=MIN(Nx,Ny[,Nz])","Optional","1","1","rmax","Real","0.0"
+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
--- /dev/null
+/Users/tacyas/Eos/src/Config/Template/ToolsTemplate.Dir/Makefile
\ No newline at end of file
--- /dev/null
+/Users/tacyas/Eos/src/Config/Template/ToolsTemplate.Dir/doc/Makefile
\ No newline at end of file
--- /dev/null
+#ifndef CONFIG_H
+#define CONFIG_H
+
+#include "../inc/mrcImageFloating.h"
+
+#endif /* CONFIG_H */
--- /dev/null
+#ifndef MRCIMAGEFLOATING_H
+#define MRCIMAGEFLOATING_H
+#include <stdio.h>
+#include <stdlib.h>
+
+#define OPTION_FLAG '-'
+#define OPTION_FLAG_POS (0)
+#define OPTION_POS (1)
+
+
+
+
+typedef struct mrcImageFloatingInfo {
+ long flagRedirect;
+
+ long flagIn;
+ char* In;
+ FILE* fptIn;
+
+ long flagOut;
+ char* Out;
+ FILE* fptOut;
+
+ long flagValue;
+ float Value;
+
+ long flagrmax;
+ float rmax;
+
+ long flagconfigFile;
+ char* configFile;
+ FILE* fptconfigFile;
+
+ long flagmode;
+ long mode;
+
+} mrcImageFloatingInfo;
+#ifdef __cplusplus
+extern "C" {
+#endif
+extern void argCheck(mrcImageFloatingInfo* info, int argc, char* avgv[]);
+extern void khorosInit(int argc, char* avgv[]);
+extern void init0(mrcImageFloatingInfo* info);
+extern void init1(mrcImageFloatingInfo* info);
+extern void usage(char* usage);
+extern void additionalUsage(void);
+extern void htmlBeforeUsage(char* usage);
+extern void htmlAfterUsage(char* usage);
+#ifdef __cplusplus
+};
+#endif
+#endif /* MRCIMAGEFLOATING_H */
--- /dev/null
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+EOSHOME=../../../../../
+DSTDIR=$(EOSHOME)/bin
+DSTDOC=$(EOSHOME)/doc
+DSTTAR=$(EOSHOME)/tar
+
+INCFILES =
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c \
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc \
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o \
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo \
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+all: $(OSTYPE)/$(OBJECTNAME)
+ if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+
+debug: $(OSTYPE)/$(OBJECTNAME).debug
+
+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
+
+
+$(OSTYPE)/$(OBJECTNAME)::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).debug::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).cudagdb::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+edit:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsEdit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsEdit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsEdit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsEdit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsEdit OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+unedit:
+ @if [ -w $(OBJECTNAME).c ]; \
+ then \
+ sccsUnedit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are not editable"; \
+ fi
+ @if [ -w wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsUnedit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are not editable."; \
+ fi
+ @if [ -w ruby/$(OBJECTNAME).rb]; \
+ then \
+ cd ruby; sccsUnedit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsUnedit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsUnedit OptionControlFile; \
+ else \
+ echo "OptionControlFile are not editable."; \
+ fi
+
+report:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsReport $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsReport $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsReport $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ] ; \
+ then \
+ cd perl; sccsReport $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsReport OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+clean :
+ rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
+ $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
+ $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
+ $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
+ $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
+ *.bak *.$(OSTYPE) core
+
+install: install-bin install-doc install-wish install-ruby install-shell install-perl
+ @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
+ then \
+ if [ -x $(KHOROS_KGENOBJ) ] ; \
+ then \
+ make install-khoros ; \
+ fi; \
+ fi
+
+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+
+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
+ @echo ---- Installing to bin
+ @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+ @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
+ then \
+ mkdir $(DSTDIR)/$(OSTYPE); \
+ fi
+ @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
+ then \
+ echo "Compilation is complete"; \
+ $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
+ $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ else \
+ echo "Compilation is incomplete. $(OBJECTNAME)"; \
+ fi
+ @echo ---- end of bin
+
+install-wish:
+ @if [ -d wish ]; \
+ then \
+ echo "---- Tcl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
+ touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ echo "---- Tcl/Tk file Installed";\
+ fi
+
+install-ruby:
+ @if [ -d ruby ]; \
+ then \
+ echo "---- Ruby/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
+ echo "---- Ruby/Tk file Installed"; \
+ fi
+
+install-perl:
+ @if [ -d perl ]; \
+ then \
+ echo "---- Perl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
+ fi; \
+ $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
+ echo "---- Perl/Tk file Installed"; \
+ fi
+
+install-shell:
+ @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi
+ @if [ -d shell ]; \
+ then \
+ echo "---- Shell file Install"; \
+ if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
+ echo "---- Shell file Installed"; \
+ fi
+
+install-khoros:
+ @echo Installing to khoros
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
+ then \
+ echo kgenobj;\
+ $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
+ fi
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
+ fi
+ @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
+ if [ $? ] ; \
+ then \
+ echo "-- setting khoros ---" ; \
+ if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
+ then \
+ $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
+ $(RM) -f $(OBJECTNAME).pane ; \
+ $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
+ $(CD) ../../ ; \
+ $(CHMOD) -R 555 $(OBJECTNAME); \
+ else \
+ echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
+ fi ; \
+ else \
+ echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
+ fi ; \
+ echo "-- end of khoros-installing"; \
+ fi
+
+install-doc: html
+ @if [ ! -d $(DSTDOC)/SmallTools ]; \
+ then \
+ mkdir $(DSTDOC)/SmallTools ;\
+ fi
+ @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
+ then \
+ $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
+ fi
+ @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f ../doc/*.html ]; \
+ then \
+ $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
+ fi
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
+ then \
+ cd $(DSTDOC)/SmallTools; $(MAKE); \
+ fi
+
+html: $(OBJECTNAME).html
+
+configFileRead:
+ @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
+
+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
+ @echo creating html
+ @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
+ @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
+ @$(RM) $(OBJECTNAME).html.tmp
+
+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
+ @ln -s -f ../sbin/MachineIndependent $@
+
+depend::
+ @echo dependency checking now
+ @if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+ rm -f $(OSTYPE)/.Depend
+ #echo C
+ @if [ -f $(OBJECTNAME).c ] ; \
+ then \
+ echo "dependency: *.c"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
+ fi
+ #echo CC
+ @if [ -f $(OBJECTNAME).cc ] ; \
+ then \
+ echo "dependency: *.cc"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).ccm ] ; \
+ then \
+ echo "dependency: *.ccm"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).cu ] ; \
+ then \
+ echo "dependency: *.cu"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
+ fi
+
+update:../Config/OptionControlFile
+ maketool $(CLASSNAME) $(OBJECTNAME) update
+
+changeName::
+
+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
+ @if [ -f test/Makefile ] ; \
+ then \
+ cd test; make ; \
+ else \
+ echo "No test Makefile"; \
+ fi
+
+TestDir::
+ @if [ ! -d test ] ; \
+ then \
+ echo "Creating test dir"; \
+ mkdir test; \
+ fi
+ @if [ ! -f test/Makefile ] ; \
+ then \
+ echo "Creating Makefile"; \
+ cd test; \
+ protoTestMakefileCreate; \
+ fi
+ @if [ ! -d test/data ]; \
+ then \
+ mkdir $(EOSHOME)/data/$(OBJECTNAME); \
+ cd test; \
+ ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
+ fi
+
+tar::
+ cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
+ ../bin/*/$(OBJECTNAME).* \
+ ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
+ ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
+
+-include $(OSTYPE)/.Depend
+-include ../Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageFloating/src/X86MAC64
\ No newline at end of file
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+argCheck(mrcImageFloatingInfo* info, int argc, char* argv[])
+{
+ long i;
+ char s[1024];
+ FILE* fpt;
+
+ if(NULL==(fpt=fopen(".EosLog", "a+"))) {
+
+ } else {
+ for(i=0; i<argc; i++) {
+ fprintf(fpt, "%s ", argv[i]);
+ }
+ fprintf(fpt, "\n");
+ fclose(fpt);
+ }
+ for(i=1; i<argc; i++) {
+ if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
+ SSWITCH(argv[i]+OPTION_POS)
+ SCASE("i") {
+ if(i+1<argc) {
+ info->In = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagIn++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("o") {
+ if(i+1<argc) {
+ info->Out = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOut++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("v") {
+ if(i+1<argc) {
+ info->Value = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagValue++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("rmax") {
+ if(i+1<argc) {
+ info->rmax = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagrmax++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("c") {
+ if(i+1<argc) {
+ info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagconfigFile++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("m") {
+ if(i+1<argc) {
+ info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmode++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("h") {
+ usage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SCASE("html") {
+ htmlBeforeUsage(argv[0]);
+ usage(argv[0]);
+ htmlAfterUsage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SDEFAULT {
+ fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ break;
+ }
+ SSWITCHEND;
+ }
+ }
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+init0(mrcImageFloatingInfo* info)
+{
+ info->fptIn = NULL; info->flagIn = 0;
+ info->fptOut = NULL; info->flagOut = 0;
+ info->Value = 0.0; info->flagValue = 0;
+ info->rmax = 0.0; info->flagrmax = 0;
+ info->fptconfigFile = NULL; info->flagconfigFile = 0;
+ info->mode = 0; info->flagmode = 0;
+}
+
+void
+init1(mrcImageFloatingInfo* info)
+{
+ char s[1024];
+ int i;
+ if(!info->flagIn) {
+ stringGetFromFile(s, "In", stdin, stdout, 0);
+ info->In = stringGetNthWord(s, 1, " ,\t");
+ info->flagIn++;
+ }
+ if(info->flagIn) {
+ info->fptIn = fileOpen(info->In, "r");
+ }
+
+ if(!info->flagOut) {
+ stringGetFromFile(s, "Out", stdin, stdout, 0);
+ info->Out = stringGetNthWord(s, 1, " ,\t");
+ info->flagOut++;
+ }
+ if(info->flagOut) {
+ info->fptOut = fileOpen(info->Out, "w");
+ }
+
+ if(info->flagValue) {
+ }
+
+ if(info->flagrmax) {
+ }
+
+ if(info->flagconfigFile) {
+ info->fptconfigFile = fileOpen(info->configFile, "r");
+ }
+
+ if(info->flagmode) {
+ }
+
+}
+#ifdef KHOROS
+#include <stdio.h>
+#include "bootstrap.h"
+#include "dataserv.h"
+#include "datamanip.h"
+extern void func_usage_additions(void);
+extern void func_free_args(kexit_status status, kaddr client_data);
+extern void func_get_args(kform* pane);
+
+void
+func_usage_additions(void)
+{
+}
+void
+func_free_args(kexit_status status, kaddr client_data)
+{
+}
+void
+func_get_args(kform* pane)
+{
+}
+void
+khorosInit(int argc, char* argv[])
+{
+ char* eospath;
+ char panepath[1024];
+ FILE* fpt;
+
+ eospath = getenv("EOS_HOME");
+ sprintf(panepath, "%s/src/Tools/mrcImage/mrcImageFloating/src/mrcImageFloating.pane", eospath);
+ khoros_initialize(argc, argv, "EOS");
+ fpt = fopen(panepath, "r"); if(NULL!=fpt) {
+ fclose(fpt);
+ kclui_initialize(panepath, KGEN_NONE, "EOS", "mrcImageFloating",
+ func_usage_additions,
+ func_get_args,
+ func_free_args);
+ }
+}
+#endif /* KHOROS */
--- /dev/null
+/*
+# mrcImageFloating : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : mrcImageFloating
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#define GLOBAL_DECLARATION
+#include "../inc/config.h"
+
+#define DEBUG
+#include "genUtil.h"
+#include "mrcImage.h"
+#include "lmrcImageFloating.h"
+
+/*
+Example:
+typedef struct lmrcImageFloatingInfo {
+ float a;
+ int b;
+} lmrcImageFloatingInfo;
+
+typedef enum lmrcImageFloatingMode {
+ a=0,
+ b=1
+} lmrcImageFloatingMode;
+*/
+
+int
+main(int argc, char* argv[])
+{
+ mrcImageFloatingInfo info;
+ lmrcImageFloatingInfo linfo;
+ mrcImage in;
+ mrcImage out;
+
+ init0(&info);
+ argCheck(&info, argc, argv);
+ init1(&info);
+
+ DEBUGPRINT("Program Start\n");
+ linfo.value = info.Value;
+ linfo.info.flagrmax = info.flagrmax;
+ linfo.info.rmax = info.rmax;
+
+ mrcFileRead(&in, info.In, "in main", 0);
+
+ lmrcImageFloating(&out, &in, &linfo, info.mode);
+
+ mrcFileWrite(&out, info.Out, "in main", 0);
+
+ exit(EXIT_SUCCESS);
+}
+
+void
+additionalUsage()
+{
+ fprintf(stderr, "----- Additional Usage -----\n");
+ lmrcImageFloatingModePrint(stderr);
+}
--- /dev/null
+<HTML>
+<HEAD>
+<TITLE>mrcImageFloating</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageFloating</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageFloating
+Options:
+ [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input: mrcImage
+ [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output: mrcImage
+ [-v[alue] Value (0.0 ).as(Real ) ] :Optional :Input: value
+ [-rmax rmax (0.0 ).as(Real ) ] :Optional :Input: default: rmax=MIN(Nx,Ny[,Nz])
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+>>> Edge Mode 0xf&mode
+All Mean: 0
+Sphere Surface Mean (rmax): 1
+Cylinder Surface Mean (rmax): 2
+Edge Pixels: 3
+</PRE>
+</BODY>
+</HTML>
--- /dev/null
+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
+ -M 1 1 52x1+0+0 +1+0 ' ' subform
+ -P 1 0 52x1+0+1 +0+0 ' ' mrcImageFloating
+ -D 1 0 9x1+0+0 'Options' _gui_options
+ -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
+ -E
+ -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImageFloating
+ -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/mrcImage/mrcImageFloating/doc/mrcImageFloating.doc help
+ -Q 1 0 5.25x1+47+0 'Close'
+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'Input: mrcImage' i
+ -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'Output: mrcImage' o
+ -f 1 0 1 0 0 -1x1+1+4.500000 0 0 0.000000 0 0 0 'Value' 'Input: value' v
+ -f 1 0 1 0 0 -1x1+1+6.000000 0 0 0.000000 0 0 0 'rmax' 'Input: default: rmax=MIN(Nx,Ny[,Nz])' rmax
+ -I 1 0 1 0 0 1 -1x1+1+7.500000 ' ' 'configFile' 'ConfigurationFile' c
+ -i 1 0 1 0 0 -1x1+1+9.000000 0 0 0 0 0 'mode' 'Mode' m
+ -E
+ -E
+-E
--- /dev/null
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+include ../../../../../Config/Define.inc
+
+all: help exec
+
+help:
+ @echo "----- Help Message Check -----"
+ @../$(OSTYPE)/$(OBJECTNAME) -h
+
+exec:
+ @echo "----- Execution Check -----"
+ ../$(OSTYPE)/$(OBJECTNAME) -i data/FlagellaSection.mrc -o data/FlagellaSection.float0 -v 0 -m 0
+ ../$(OSTYPE)/$(OBJECTNAME) -i data/FlagellaSection.mrc -o data/FlagellaSection.float1 -v 0 -m 1
+ ../$(OSTYPE)/$(OBJECTNAME) -i data/FlagellaSection.mrc -o data/FlagellaSection.float2 -v 0 -m 2
+ ../$(OSTYPE)/$(OBJECTNAME) -i data/FlagellaSection.mrc -o data/FlagellaSection.float3 -v 0 -m 3
+ @echo "----- Calc check -----"
+
+clean:
--- /dev/null
+../../../../../..//data/mrcImageFloating
\ No newline at end of file
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
+void
+usage(char* thisProgram)
+{
+ fprintf(stderr, "Usage: %s\n", thisProgram);
+ fprintf(stderr, "Options:\n");
+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input: mrcImage\n");
+ fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output: mrcImage\n");
+ fprintf(stderr, " [-v[alue] Value (0.0 ).as(Real ) ] :Optional :Input: value\n");
+ fprintf(stderr, " [-rmax rmax (0.0 ).as(Real ) ] :Optional :Input: default: rmax=MIN(Nx,Ny[,Nz])\n");
+ fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
+ fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
+ additionalUsage();
+}
+
+void
+htmlBeforeUsage(char* thisProgram)
+{
+ fprintf(stderr, "<HTML>\n");
+ fprintf(stderr, "<HEAD>\n");
+ fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
+ fprintf(stderr, "</HEAD>\n");
+ fprintf(stderr, "<BODY>\n");
+ fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
+ fprintf(stderr, "<H2>Usage</H2>\n");
+ fprintf(stderr, "<PRE>\n");
+}
+
+void
+htmlAfterUsage(char* thisProgram)
+{
+ fprintf(stderr, "</PRE>\n");
+ fprintf(stderr, "</BODY>\n");
+ fprintf(stderr, "</HTML>\n");
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
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