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Modify: PIONE tutorial Package6: Define Parameter Mode. v2.0.2p0079
authorkinoshita-eos <kinoshita@yasunaga-lab.bio.kyutech.ac.jp>
Fri, 19 Dec 2014 04:39:38 +0000 (13:39 +0900)
committerkinoshita-eos <kinoshita@yasunaga-lab.bio.kyutech.ac.jp>
Fri, 19 Dec 2014 04:39:38 +0000 (13:39 +0900)
renamed:    SampleCode/PIONE/Package6/Annotation3.0.pione -> SampleCode/PIONE/Package6/Annotation3.pione
modified:   SampleCode/PIONE/Package6/Final3.pione
new file:   SampleCode/PIONE/Package6/Param.pione
Add: PIONE tutorial Package7: About Scenario.
new file:   SampleCode/PIONE/Package7/1VOM-m1/Scenario.pione
new file:   SampleCode/PIONE/Package7/1VOM-m1/input/1VOM.mrc
new file:   SampleCode/PIONE/Package7/1VOM-m1/output/1VOM.roi
new file:   SampleCode/PIONE/Package7/Annotation4.pione
new file:   SampleCode/PIONE/Package7/Param.pione

SampleCode/PIONE/Package6/Annotation3.pione [moved from SampleCode/PIONE/Package6/Annotation3.0.pione with 84% similarity]
SampleCode/PIONE/Package6/Final3.pione
SampleCode/PIONE/Package6/Param.pione [new file with mode: 0644]
SampleCode/PIONE/Package7/1VOM-m1/Scenario.pione [new file with mode: 0644]
SampleCode/PIONE/Package7/1VOM-m1/input/1VOM.mrc [new file with mode: 0644]
SampleCode/PIONE/Package7/1VOM-m1/output/1VOM.roi [new file with mode: 0644]
SampleCode/PIONE/Package7/Annotation4.pione [new file with mode: 0644]
SampleCode/PIONE/Package7/Param.pione [new file with mode: 0644]

similarity index 84%
rename from SampleCode/PIONE/Package6/Annotation3.0.pione
rename to SampleCode/PIONE/Package6/Annotation3.pione
index e8a73d6..a928c71 100644 (file)
@@ -1,4 +1,4 @@
 .@ PackageName :: "CenterGet"
 .@ Editor              :: "Kinoshita"
-.@ Tag                 :: "v0.3.0"
+.@ Tag                 :: "v0.3.1"
 .@ Parent              :: &CenterGet.editor("Kinoshita").tag("v0.2.0")
index 70a1b9e..3615c4a 100644 (file)
@@ -3,11 +3,11 @@ Rule Final
        input '{$I[1][1]}.roi'
        output '*.tiff'.all
 Action
-       for (( num = 0; num <= 2; num++ )) ; \
-       do \
-               mrcImageProjection -i {$I[1]} -o {$I[1]}.2d -m ${num}; \
-               mrc2tiff -i {$I[1]}.2d -o {$I[1]}-${num}.tiff; \
-               mrcImageProjection -i {$I[2]} -o {$I[2]}.2d -m ${num}; \
-               mrc2tiff -i {$I[2]}.2d -o {$I[2]}-${num}.tiff; \
+       for (( num = 0; num < {$Mode}; num++ )) ;
+       do
+               mrcImageProjection -i {$I[1]} -o {$I[1]}.2d -m ${num};
+               mrc2tiff -i {$I[1]}.2d -o {$I[1]}-${num}.tiff;
+               mrcImageProjection -i {$I[2]} -o {$I[2]}.2d -m ${num};
+               mrc2tiff -i {$I[2]}.2d -o {$I[2]}-${num}.tiff;
        done;
 End
diff --git a/SampleCode/PIONE/Package6/Param.pione b/SampleCode/PIONE/Package6/Param.pione
new file mode 100644 (file)
index 0000000..2be39be
--- /dev/null
@@ -0,0 +1,3 @@
+Basic Param
+       $Mode := 3
+End
\ No newline at end of file
diff --git a/SampleCode/PIONE/Package7/1VOM-m1/Scenario.pione b/SampleCode/PIONE/Package7/1VOM-m1/Scenario.pione
new file mode 100644 (file)
index 0000000..7ce9093
--- /dev/null
@@ -0,0 +1,2 @@
+.@ ScenarioName        :: "i:1VOM m:1"
+.@ ParamSet            :: "{Mode:1}"
diff --git a/SampleCode/PIONE/Package7/1VOM-m1/input/1VOM.mrc b/SampleCode/PIONE/Package7/1VOM-m1/input/1VOM.mrc
new file mode 100644 (file)
index 0000000..90e8fba
Binary files /dev/null and b/SampleCode/PIONE/Package7/1VOM-m1/input/1VOM.mrc differ
diff --git a/SampleCode/PIONE/Package7/1VOM-m1/output/1VOM.roi b/SampleCode/PIONE/Package7/1VOM-m1/output/1VOM.roi
new file mode 100644 (file)
index 0000000..ad1eafe
Binary files /dev/null and b/SampleCode/PIONE/Package7/1VOM-m1/output/1VOM.roi differ
diff --git a/SampleCode/PIONE/Package7/Annotation4.pione b/SampleCode/PIONE/Package7/Annotation4.pione
new file mode 100644 (file)
index 0000000..60c1e23
--- /dev/null
@@ -0,0 +1,4 @@
+.@ PackageName :: "CenterGet"
+.@ Editor              :: "Kinoshita"
+.@ Tag                 :: "v0.4.0"
+.@ Parent              :: &CenterGet.editor("Kinoshita").tag("v0.3.1")
diff --git a/SampleCode/PIONE/Package7/Param.pione b/SampleCode/PIONE/Package7/Param.pione
new file mode 100644 (file)
index 0000000..2be39be
--- /dev/null
@@ -0,0 +1,3 @@
+Basic Param
+       $Mode := 3
+End
\ No newline at end of file