Modify: add ctfMode about CTFCorrection3

	modified:   CTFCorrection/CTFCorrection3/Makefile

diff --git a/CTFCorrection/CTFCorrection3/Makefile b/CTFCorrection/CTFCorrection3/Makefile
index ca38ed3..44dc843 100644 (file)
--- a/CTFCorrection/CTFCorrection3/Makefile
+++ b/CTFCorrection/CTFCorrection3/Makefile
@@ -20,7 +20,8 @@
 CTF2_KV=200
 CTF2_CS=2.1
 CTF2_DEFOCUS=9000
-CTF2_AIN=0.3
+CTF2_AIN=0.3   #need CTF2_MODE +32
+CTF2_MODE=0
 
 #### Rules of the list created ####
 ctfinfoauto2:  $(FFTS:.fft=.ctfinfoauto2)
@@ -49,7 +50,7 @@ all1::
        make ImageAverage;
 
 ProcessForInput2::
-       mrcImageCTFObservation -i $(INPUT).$(INPUT_2D_EXT) -o $(INPUT)-2.$(CTF_2D_EXT) \
+       mrcImageCTFObservation -i $(INPUT).$(INPUT_2D_EXT) -o $(INPUT)-2.$(CTF_2D_EXT) -ctfMode $(CTF2_MODE) \
                                                        -kV $(CTF2_KV) -Cs $(CTF2_CS) -df $(CTF2_DEFOCUS) -Ain $(CTF2_AIN);
        ln -s $(INPUT)-2.$(CTF_2D_EXT) $(INPUT)-2.mrc;
        mrc2tiff -i $(INPUT)-2.$(INPUT_2D_EXT) -o $(INPUT)-2_org.tiff;