--- /dev/null
+.@ PackageName :: "Ref3DtoRef2D"
+.@ Editor :: "Kinoshita"
+.@ Tag :: "v0.1.0"
--- /dev/null
+Rule Interaction
+ input 'Start{$val}!Flag'
+ output '*.*'.all
+ param $val
+Action
+ # build public directory for pione-interactive
+ mkdir public
+ cp etc/* public
+ cp bin/* public
+
+ # start interactive operation
+ pione-interactive browser --public public
+
+ cp public/* .
+ for file in $(ls *Mode *Rot1 *Rot2 *Rot3 *.ref3d) ;
+ do
+ mv "$file" "$file-{$val}";
+ done
+End
--- /dev/null
+Rule Main
+ output '*.ref3d'
+ output '*.ref2d'
+ output '*.mon'
+ output '*.gif'
+Flow
+ rule Start
+ rule SubMain
+ rule Result
+ rule Finish
+End
+
+Rule Start
+ output 'Start0!Flag'
+Action
+ touch {$O[1]}
+End
+
+Rule SubMain
+ input 'Start*!Flag'
+ output '*.*'.all
+Flow
+ rule Interaction {val : '{$I[1][1]}'.str().i()}
+ rule Ref3DtoRef2D {val : '{$I[1][1]}'.str().i()}
+End
+
+Rule Finish
+ input 'Finish*!Flag'
+ input '*.*-{$I[1][1]}'
+ output '{$I[2][1]}.{$I[2][2]}'
+Action
+ cp {$I[2]} {$O[1]}
+End
\ No newline at end of file
--- /dev/null
+Rule Ref3DtoRef2D
+ input '*.!*-{$val}'.all
+ input '*.ref3d-{$val}'
+ output '*.ref2d-{$val}'.all
+ output 'Ref3DtoRef2D.info-{$val}'
+ param $val
+Flow
+ rule FlowLoop3Dto2D1 {val : $val}
+ rule Info3Dto2D {val : $val}
+End
+
+Rule Info3Dto2D
+ input '*.ref2d-{$val}'.all
+ output 'Ref3DtoRef2D.info-{$val}'
+ param $val
+Action
+ for file in $(ls *.ref2d-{$val})
+ do
+ echo "./$file" >> {$O[1]}
+ done
+End
+
+Rule FlowLoop3Dto2D1
+ input '*!*!*.!Rot1-{$val}'
+ input '*!*!*.!Rot2-{$val}'
+ input '*!*!*.!Rot3-{$val}'
+ input '*.!Mode-{$val}'
+ input '*.ref3d-{$val}'
+ output '*.ref2d-{$val}'.all
+ $min1 := '{$I[1][1]}'.str().f()
+ $max1 := '{$I[1][2]}'.str().f()
+ $delta1 := '{$I[1][3]}'.str().f()
+ $loop1 := ($max1 - $min1) / $delta1
+ param $val1 := 0.0
+ param $val
+Flow
+ rule FlowLoop3Dto2D2 {val1 : $val1, val :$val}
+
+ if $val1 + 1.0 <= $loop1
+ rule FlowLoop3Dto2D1 {val1 : $val1 + 1.0, val :$val}
+ end
+End
+
+Rule FlowLoop3Dto2D2
+ input '*!*!*.!Rot1-{$val}'
+ input '*!*!*.!Rot2-{$val}'
+ input '*!*!*.!Rot3-{$val}'
+ input '*.!Mode-{$val}'
+ input '*.ref3d-{$val}'
+ output '*.ref2d-{$val}'.all
+ $min2 := '{$I[2][1]}'.str().f()
+ $max2 := '{$I[2][2]}'.str().f()
+ $delta2 := '{$I[2][3]}'.str().f()
+ $loop2 := ($max2 - $min2) / $delta2
+ param $val1
+ param $val2 := 0.0
+ param $val
+Flow
+ rule FlowLoop3Dto2D3 {val1 : $val1, val2 : $val2, val :$val}
+
+ if $val2 + 1.0 <= $loop2
+ rule FlowLoop3Dto2D2 {val1 : $val1, val2 : $val2 + 1.0, val :$val}
+ end
+End
+
+Rule FlowLoop3Dto2D3
+ input '*!*!*.!Rot1-{$val}'
+ input '*!*!*.!Rot2-{$val}'
+ input '*!*!*.!Rot3-{$val}'
+ input '*.!Mode-{$val}'
+ input '*.ref3d-{$val}'
+ output '*.ref2d-{$val}'.all
+ $min3 := '{$I[3][1]}'.str().f()
+ $max3 := '{$I[3][2]}'.str().f()
+ $delta3 := '{$I[3][3]}'.str().f()
+ $loop3 := ($max3 - $min3) / $delta3
+ param $val1
+ param $val2
+ param $val3 := 0.0
+ param $val
+Flow
+ rule One3Dto2D {val1 : $val1, val2 : $val2, val3 : $val3, val :$val}
+
+ if $val3 + 1.0 <= $loop3
+ rule FlowLoop3Dto2D3 {val1 : $val1, val2 : $val2, val3 : $val3 + 1.0, val :$val}
+ end
+End
+
+Rule One3Dto2D
+ input '*!*!*.!Rot1-{$val}'
+ input '*!*!*.!Rot2-{$val}'
+ input '*!*!*.!Rot3-{$val}'
+ input '*.!Mode-{$val}'
+ input '*.ref3d-{$val}'
+ output '*.ref2d-{$val}'.all
+ param $val1
+ param $val2
+ param $val3
+ param $val
+Action
+ min1={$I[1][1]}
+ min2={$I[2][1]}
+ min3={$I[3][1]}
+ delta1={$I[1][3]}
+ delta2={$I[2][3]}
+ delta3={$I[3][3]}
+ mode={$I[4][1]}
+ rot1=$(echo "scale=5; {$val1} * $delta1 + $min1" | bc)
+ rot2=$(echo "scale=5; {$val2} * $delta2 + $min2" | bc)
+ rot3=$(echo "scale=5; {$val3} * $delta3 + $min3" | bc)
+ output="{$I[5][1]}-$mode-$rot1-$rot2-$rot3.ref2d-{$val}"
+ mrc3Dto2D -i {$I[5]} -o $output \
+ -Rot1 $rot1 $rot1 1 \
+ -Rot2 $rot2 $rot2 1 \
+ -Rot3 $rot3 $rot3 1 \
+ -EulerMode $mode;
+End
--- /dev/null
+Rule Result
+ input 'Ref3DtoRef2D.info-*'
+ input '*.ref2d-{$I[1][1]}'.all
+ output '*!Flag'
+ output 'Ref3DtoRef2D.mon-{$I[1][1]}'
+ output 'Ref3DtoRef2D.gif-{$I[1][1]}'
+Flow
+ rule Ref2DtoGIF {val : '{$I[1][1]}'.str().i()}
+ rule ResultCheck {val : '{$I[1][1]}'.str().i()}
+End
+
+Rule Ref2DtoGIF
+ input 'Ref3DtoRef2D.info-{$val}'
+ input '*.ref2d-{$val}'.all
+ output 'Ref3DtoRef2D.mon-{$val}'
+ output 'Ref3DtoRef2D.gif-{$val}'
+ param $val
+Action
+ mrcImageMontageCreate -i {$I[1]} -o {$O[1]}
+ mrc2gif -i {$O[1]} -o {$O[2]}
+End
+
+Rule ResultCheck
+ input 'Ref3DtoRef2D.gif-{$val}'
+ output '*!Flag'
+ param $val
+Action
+ # build public directory for pione-interactive
+ mkdir public
+ cp etc/index2.html public/index.html
+ cp bin/* public
+ cp {$I[1]} public/Ref3DtoRef2D.gif
+
+ # start interactive operation
+ pione-interactive browser --public public
+
+ cp public/* .
+ if [ -e "Finish!Flag" ]; then
+ mv "Finish!Flag" "Finish{$val}!Flag";
+ elif [ -e "Start!Flag" ]; then
+ mv "Start!Flag" "Start{$val + 1}!Flag";
+ fi
+End
--- /dev/null
+#!/usr/bin/env ruby
+
+require 'cgi'
+
+cgi = CGI.new
+
+### Header
+strHTML = ""
+strHTML += "<!DOCTYPE html>"
+strHTML += "<html>"
+strHTML += "<head>"
+strHTML += "<title>Finish</title>"
+### Auto Close
+strHTML += '<meta http-equiv="REFRESH" content="0;URL=?pione-action=finish">'
+
+# Main Process
+command = "touch Finish!Flag"
+system(command)
+
+strHTML += "</head>"
+strHTML += "</html>"
+
+# Output as html
+cgi.out(type: "text/html") do
+ strHTML
+end
--- /dev/null
+#!/usr/bin/env ruby
+
+require 'cgi'
+
+cgi = CGI.new
+
+### Header
+strHTML = ""
+strHTML += "<!DOCTYPE html>"
+strHTML += "<html>"
+strHTML += "<head>"
+strHTML += "<title>Ref3DtoRef2D</title>"
+### Auto Close
+strHTML += '<meta http-equiv="REFRESH" content="0;URL=?pione-action=finish">'
+
+# Main Process
+
+## Query to Parameters
+
+### Copy InputFile
+fpQueryInputFile = cgi.params['InputFile'][0]
+strInputFile = fpQueryInputFile.original_filename
+fpInputFile = open(strInputFile, "wb")
+fpInputFile.write(fpQueryInputFile.read)
+fpInputFile.close
+
+### Other Query
+strMode = cgi['Mode1'] + cgi['Mode2'] + cgi['Mode3'] + cgi['Mode4']
+strRotMin1 = cgi['RotMin1']
+strRotMax1 = cgi['RotMax1']
+strRotDelta1 = cgi['RotDelta1']
+strRotMin2 = cgi['RotMin2']
+strRotMax2 = cgi['RotMax2']
+strRotDelta2 = cgi['RotDelta2']
+strRotMin3 = cgi['RotMin3']
+strRotMax3 = cgi['RotMax3']
+strRotDelta3 = cgi['RotDelta3']
+
+### Set Parameter to FileNames
+strParamFile = strMode + ".!Mode"
+command = "touch " + strParamFile
+system(command)
+
+strParamFile = strRotMin1 + "!" + strRotMax1 + "!" + strRotDelta1 + ".!Rot1"
+command = "touch " + strParamFile
+system(command)
+
+strParamFile = strRotMin2 + "!" + strRotMax2 + "!" + strRotDelta2 + ".!Rot2"
+command = "touch " + strParamFile
+system(command)
+
+strParamFile = strRotMin3 + "!" + strRotMax3 + "!" + strRotDelta3 + ".!Rot3"
+command = "touch " + strParamFile
+system(command)
+
+command = "cp " + strInputFile + " Refer.ref3d"
+system(command)
+
+strHTML += "</head>"
+strHTML += "</html>"
+
+# Output as html
+cgi.out(type: "text/html") do
+ strHTML
+end
--- /dev/null
+#!/usr/bin/env ruby
+
+require 'cgi'
+
+cgi = CGI.new
+
+### Header
+strHTML = ""
+strHTML += "<!DOCTYPE html>"
+strHTML += "<html>"
+strHTML += "<head>"
+strHTML += "<title>Retry</title>"
+### Auto Close
+strHTML += '<meta http-equiv="REFRESH" content="0;URL=?pione-action=finish">'
+
+# Main Process
+command = "touch Start!Flag"
+system(command)
+
+strHTML += "</head>"
+strHTML += "</html>"
+
+# Output as html
+cgi.out(type: "text/html") do
+ strHTML
+end
--- /dev/null
+<!DOCTYPE html>
+<html>
+ <head>
+ <meta charset="utf-8">
+ <title>Ref3DtoRef2D</title>
+ </head>
+ <body>
+ <form action="Ref3DtoRef2D.cgi" method="post" enctype="multipart/form-data">
+ <button type="submit">開始</button>
+ <br>
+ <table>
+ <tr>
+ <td>
+ <input type="file" name="InputFile"/>
+ </td>
+ <td>
+ 入力ファイル名(.ref3d)
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <select name="Mode1">
+ <option value="X">X</option>
+ <option value="Y">Y</option>
+ <option value="Z">Z</option>
+ </select>
+ <select name="Mode2">
+ <option value="O">O</option>
+ <option value="E">E</option>
+ </select>
+ <select name="Mode3">
+ <option value="Y">Y</option>
+ <option value="N">N</option>
+ </select>
+ <select name="Mode4">
+ <option value="S">S</option>
+ <option value="R">R</option>
+ </select>
+ </td>
+ <td>
+ 回転モード
+ </td>
+ </tr>
+ </table>
+ <table>
+ <tr>
+ <td>
+
+ </td>
+ <td>
+ 最小値
+ </td>
+ <td>
+ 最大値
+ </td>
+ <td>
+ 加算値
+ </td>
+ </tr>
+ <tr>
+ <td>
+ 角度１
+ </td>
+ <td>
+ <input type="text" name="RotMin1" value="0"/>
+ </td>
+ <td>
+ <input type="text" name="RotMax1" value="359"/>
+ </td>
+ <td>
+ <input type="text" name="RotDelta1" value="30"/>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ 角度２
+ </td>
+ <td>
+ <input type="text" name="RotMin2" value="0"/>
+ </td>
+ <td>
+ <input type="text" name="RotMax2" value="359"/>
+ </td>
+ <td>
+ <input type="text" name="RotDelta2" value="30"/>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ 角度３
+ </td>
+ <td>
+ <input type="text" name="RotMin3" value="0"/>
+ </td>
+ <td>
+ <input type="text" name="RotMax3" value="0"/>
+ </td>
+ <td>
+ <input type="text" name="RotDelta3" value="30"/>
+ </td>
+ </tr>
+ </table>
+ </form>
+ <br>
+ <br>
+ <a href="index.html">戻る</a><br>
+ <a href="?pione-action=finish">終了</a><br>
+ </body>
+</html>
\ No newline at end of file
--- /dev/null
+<!DOCTYPE html>
+<html>
+ <head>
+ <meta charset="utf-8">
+ <title>InteractiveCommand Index Page</title>
+ </head>
+ <body>
+ <a href="Ref3DtoRef2D.html">Ref3DtoRef2D</a><br>
+ <br>
+ <a href="?pione-action=finish">終了</a>
+ </body>
+</html>
\ No newline at end of file
--- /dev/null
+<!DOCTYPE html>
+<html>
+ <head>
+ <meta charset="utf-8">
+ <title>InteractiveCommand Index Page</title>
+ </head>
+ <body>
+ <img src="Ref3DtoRef2D.gif"><br>
+ <br>
+ <a href="Finish.cgi">決定</a><br>
+ <a href="Retry.cgi">やり直し</a>
+ </body>
+</html>
\ No newline at end of file
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