Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
	hostdepend/ALPHA
	hostdepend/ALPHALINUX
	hostdepend/ALPHALINUX5
	hostdepend/ALPHAOSF1
	hostdepend/CELLLINUX64
	hostdepend/HP
	hostdepend/I386LINUX
	hostdepend/I686LINUX
	hostdepend/SGI
	hostdepend/SPARC
	hostdepend/X86MAC64/bin/X86MAC64/clusterLog2ToLog
	hostdepend/X86MAC64/bin/X86MAC64/clusterLogASCII2Binary
	hostdepend/X86MAC64/bin/X86MAC64/clusterShow
	hostdepend/X86MAC64/bin/X86MAC64/mrcImageClusterAnalysis
	hostdepend/X86MAC64/lib/X86MAC64/libCluster.a
	hostdepend/X86MAC64/lib/X86MAC64/libmrcImage.a
	hostdepend/X86MAC64/src/Tools/Cluster/clusterLog2ToLog/src/X86MAC64/clusterLog2ToLog
	hostdepend/X86MAC64/src/Tools/Cluster/clusterLogASCII2Binary/src/X86MAC64/clusterLogASCII2Binary
	hostdepend/X86MAC64/src/Tools/Cluster/clusterShow/src/X86MAC64/clusterShow
	hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86MAC64/mrcImageClusterAnalysis

diff --cc bin/rasmonyo
index eddb955,eddb955..0000000
deleted file mode 120000,120000
--- 1/bin/rasmonyo
--- 2/bin/rasmonyo
+++ /dev/null
@@@ -1,1 -1,1 +1,0 @@@
--../sbin/MachineIndependent

diff --cc hostdepend/X86MAC64/bin/X86MAC64/clusterLog2ToLog
index 4175567,0000000..cce679a
mode 100755,000000..100755
Binary files differ

diff --cc hostdepend/X86MAC64/bin/X86MAC64/clusterLogASCII2Binary
index a671564,0000000..d646167
mode 100755,000000..100755
Binary files differ

diff --cc hostdepend/X86MAC64/bin/X86MAC64/clusterShow
index e007ce2,0000000..2b3e1bf
mode 100755,000000..100755
Binary files differ

diff --cc hostdepend/X86MAC64/bin/X86MAC64/mrcImageClusterAnalysis
index c1aab06,0000000..c1fe0ca
mode 100755,000000..100755
Binary files differ

diff --cc hostdepend/X86MAC64/lib/X86MAC64/libCluster.a
index 557f42c,0000000..29f7653
mode 100644,000000..100644
Binary files differ

diff --cc hostdepend/X86MAC64/lib/X86MAC64/libmrcImage.a
index 81d9022,0000000..5330496
mode 100644,000000..100644
Binary files differ

diff --cc hostdepend/X86MAC64/src/Tools/Cluster/clusterLog2ToLog/src/X86MAC64/clusterLog2ToLog
index 4175567,0000000..cce679a
mode 100755,000000..100755
Binary files differ

diff --cc hostdepend/X86MAC64/src/Tools/Cluster/clusterLogASCII2Binary/src/X86MAC64/clusterLogASCII2Binary
index a671564,0000000..d646167
mode 100755,000000..100755
Binary files differ

diff --cc hostdepend/X86MAC64/src/Tools/Cluster/clusterShow/src/X86MAC64/clusterShow
index e007ce2,0000000..2b3e1bf
mode 100755,000000..100755
Binary files differ

diff --cc hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86MAC64/mrcImageClusterAnalysis
index c1aab06,0000000..c1fe0ca
mode 100755,000000..100755
Binary files differ

diff --cc src/Tools/Config/Define.inc
index d1ed5f3,d1ed5f3..8374c2d
--- 1/src/Tools/Config/Define.inc
--- 2/src/Tools/Config/Define.inc
+++ b/src/Tools/Config/Define.inc
@@@ -33,6 -33,6 +33,7 @@@ WORLDNAME=Tool
  WORLDNAME=Tools
  WORLDNAME=Tools
  WORLDNAME=Tools
++WORLDNAME=Tools
  WORLDNAME=Tools
  WORLDNAME=Tools
  WORLDNAME=Tools

diff --cc src/Tools/Makefile
index ad84110,ad84110..80a2401
mode 100755,100755..120000
--- 1/src/Tools/Makefile
--- 2/src/Tools/Makefile
+++ b/src/Tools/Makefile
@@@ -1,5 -1,5 +1,1 @@@
--include ../Config/Define.inc
--include Config/Define.inc
--include .Source
--
--include Config/Target.inc
++/Users/tacyas/Eos/src/Config/Template/ToolsHomeTemplate.Dir/Makefile

diff --cc src/Tools/simulation/.Source
index 8af04f3,8af04f3..74d0eaa
--- 1/src/Tools/simulation/.Source
--- 2/src/Tools/simulation/.Source
+++ b/src/Tools/simulation/.Source
@@@ -2,4 -2,4 +2,5 @@@ SOURCE=
  energyTransferModelCheck \
  energyTransferModelResultCheck \
  muscleSimulation \
++probabilityDensityFunction \
  #LastSource

diff --cc src/Tools/simulation/probabilityDensityFunction/Config/Define.inc
index 0000000,0000000..935c840
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/Config/Define.inc
@@@ -1,0 -1,0 +1,4 @@@
++OBJECTNAME = probabilityDensityFunction
++EXTRA_LIB  =
++EXTRA_CCOPTS =
++EXTRA_INC =

diff --cc src/Tools/simulation/probabilityDensityFunction/Config/OptionControlFile
index 0000000,0000000..465fc1c
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/Config/OptionControlFile
@@@ -1,0 -1,0 +1,6 @@@
++# OptionControlFile
++# FileFormat
++"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile","NULL"
++"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile","NULL"
++"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
++"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"

diff --cc src/Tools/simulation/probabilityDensityFunction/Config/Target.inc
index e69de29,0000000..e69de29
mode 100755,000000..100755
--- 1/Integration/2DClustering/LogPS
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/Config/Target.inc

diff --cc src/Tools/simulation/probabilityDensityFunction/Makefile
index 0000000,0000000..6c4a336
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/Makefile
@@@ -1,0 -1,0 +1,115 @@@
++include ../../../Config/Define.inc
++include ../../Config/Define.inc
++include ../Config/Define.inc
++include Config/Define.inc
++
++all:
++      cd src; make all; cd ..
++
++install:
++      cd src; make install; cd ..
++
++
++putSF:
++      if [ -f private ] ; \
++      then \
++              echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
++      else \
++              cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
++      fi
++
++put:
++      cd src; make put; cd ..
++
++clean:
++      cd src; make clean; cd ..
++
++depend:
++      cd src; make depend; cd ..
++
++check:
++      @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
++              echo making directory; \
++              mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
++      fi
++      ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE); 
++      @$(RM) src/Makefile
++      @echo "New src/Makefile" 
++      @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
++      @cd src; touch $(OSTYPE)/.Depend; make depend
++
++update:
++      @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
++              echo making directory; \
++              mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
++      fi
++      ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE); 
++      @$(RM) src/Makefile
++      @echo "New src/Makefile" 
++      @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
++      @cd src; touch $(OSTYPE)/.Depend; echo "Y" | make update      
++
++cvsupdate::
++      cvs -d $(EOS_CVSROOT) update -d 
++
++cvscommit::
++      cvs -d $(EOS_CVSROOT) commit
++
++backup:
++      @cd ../../../..;     \
++      echo $(OBJECTNAME) ; \
++      tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config       ; \
++      tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
++      tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
++      tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
++      tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
++      tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
++      tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
++      tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
++      tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
++
++backup-all:
++      @cd ../../../..;     \
++      echo $(OBJECTNAME) ; \
++      tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config       ; \
++      tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
++      tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
++      tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
++      tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
++      tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
++      tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
++      tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
++      tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
++      
++distribute:
++      cd ../../../..;     \
++      echo $(OBJECTNAME) ; \
++      tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config     ; \
++      tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
++      tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
++      tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
++      tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
++      tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
++      tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
++      tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
++      tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
++      tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
++      
++distribute-all:
++      @cd ../../../..;     \
++      echo $(OBJECTNAME) ; \
++      tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config     ; \
++      tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
++      tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
++      tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
++      tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
++      tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
++      tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
++      tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
++      tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
++      tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
++
++eosintroduce:
++      ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./ 
++
++include Config/Target.inc

diff --cc src/Tools/simulation/probabilityDensityFunction/doc/Makefile
index 0000000,0000000..8215199
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/doc/Makefile
@@@ -1,0 -1,0 +1,2 @@@
++install:
++      cd ../src; make install-doc; cd ../doc  

diff --cc src/Tools/simulation/probabilityDensityFunction/inc/config.h
index 0000000,0000000..ea12f19
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/inc/config.h
@@@ -1,0 -1,0 +1,6 @@@
++#ifndef CONFIG_H
++#define CONFIG_H
++
++#include "../inc/probabilityDensityFunction.h"
++
++#endif /* CONFIG_H */

diff --cc src/Tools/simulation/probabilityDensityFunction/inc/probabilityDensityFunction.h
index 0000000,0000000..69b8608
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/inc/probabilityDensityFunction.h
@@@ -1,0 -1,0 +1,46 @@@
++#ifndef PROBABILITYDENSITYFUNCTION_H
++#define PROBABILITYDENSITYFUNCTION_H
++#include <stdio.h>
++#include <stdlib.h>
++
++#define OPTION_FLAG     '-'
++#define OPTION_FLAG_POS (0)
++#define OPTION_POS      (1)
++
++
++
++
++typedef struct probabilityDensityFunctionInfo {
++    long flagRedirect;
++
++    long flagIn;
++    char* In;
++    FILE* fptIn;
++    
++    long flagOut;
++    char* Out;
++    FILE* fptOut;
++    
++    long flagconfigFile;
++    char* configFile;
++    FILE* fptconfigFile;
++    
++    long flagmode;
++    long mode;
++    
++} probabilityDensityFunctionInfo;
++#ifdef __cplusplus
++extern "C" {
++#endif
++extern void argCheck(probabilityDensityFunctionInfo* info, int argc, char* avgv[]);
++extern void khorosInit(int argc, char* avgv[]);
++extern void init0(probabilityDensityFunctionInfo* info);
++extern void init1(probabilityDensityFunctionInfo* info);
++extern void usage(char* usage);
++extern void additionalUsage(void);
++extern void htmlBeforeUsage(char* usage);
++extern void htmlAfterUsage(char* usage);
++#ifdef __cplusplus
++};
++#endif
++#endif /* PROBABILITYDENSITYFUNCTION_H */

diff --cc src/Tools/simulation/probabilityDensityFunction/src/.Depend
index e69de29,0000000..e69de29
mode 100755,000000..100755
--- 1/Integration/2DClustering/LogPS
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/src/.Depend

diff --cc src/Tools/simulation/probabilityDensityFunction/src/.Source
index e69de29,0000000..e69de29
mode 100755,000000..100755
--- 1/Integration/2DClustering/LogPS
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/src/.Source

diff --cc src/Tools/simulation/probabilityDensityFunction/src/Makefile
index 0000000,0000000..7beb110
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/src/Makefile
@@@ -1,0 -1,0 +1,427 @@@
++include ../Config/Define.inc
++include ../../Config/Define.inc
++include ../../../Config/Define.inc
++include ../../../../Config/Define.inc
++
++EOSHOME=../../../../../
++DSTDIR=$(EOSHOME)/bin
++DSTDOC=$(EOSHOME)/doc
++DSTTAR=$(EOSHOME)/tar
++
++INCFILES   = 
++
++LIBFILES   = \
++                      $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
++
++LIBFILESDEBUG   = \
++                      $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
++
++SRCC  = \
++                      $(OBJECTNAME).c \
++                      init.c \
++                      argCheck.c \
++                      usage.c  \
++                      util.c \
++
++SRCCXX  = \
++                      $(OBJECTNAME).cc \
++                      init.cc \
++                      argCheck.cc \
++                      usage.cc  \
++                      util.cc \
++
++MODULES    = \
++                      $(OBJECTNAME).o \
++                      init.o \
++                      argCheck.o \
++                      usage.o  \
++                      util.o \
++
++REALMODULES    = \
++                      $(OSTYPE)/$(OBJECTNAME).o \
++                      $(OSTYPE)/init.o \
++                      $(OSTYPE)/argCheck.o \
++                      $(OSTYPE)/usage.o \
++                      $(OSTYPE)/util.o 
++
++MODULESDEBUG    = \
++                      $(OBJECTNAME).debugo \
++                      init.debugo \
++                      argCheck.debugo \
++                      usage.debugo  \
++                      util.debugo \
++
++REALMODULESDEBUG    = \
++                      $(OSTYPE)/$(OBJECTNAME).debugo \
++                      $(OSTYPE)/init.debugo \
++                      $(OSTYPE)/argCheck.debugo \
++                      $(OSTYPE)/usage.debugo \
++                      $(OSTYPE)/util.debugo 
++
++
++all: $(OSTYPE)/$(OBJECTNAME) 
++      if [ ! -L $(OSTYPE) ] ; then \
++              moveHostdependent; \
++      fi
++
++debug: $(OSTYPE)/$(OBJECTNAME).debug
++
++cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
++
++
++$(OSTYPE)/$(OBJECTNAME)::
++      @$(RM) -f $(OSTYPE)/Makefile ; \
++      $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
++      cd $(OSTYPE); \
++      $(MAKE) $(OBJECTNAME)  WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
++
++$(OSTYPE)/$(OBJECTNAME).debug::
++      @$(RM) -f $(OSTYPE)/Makefile ; \
++      $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
++      cd $(OSTYPE); \
++      $(MAKE) $(OBJECTNAME).debug  WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
++
++$(OSTYPE)/$(OBJECTNAME).cudagdb::
++      @$(RM) -f $(OSTYPE)/Makefile ; \
++      $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
++      cd $(OSTYPE); \
++      $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
++
++cvsupdate::
++      cvs -d $(EOS_CVSROOT) update -d 
++
++cvscommit::
++      cvs -d $(EOS_CVSROOT) commit 
++
++edit:
++      @if [ -r $(OBJECTNAME).c ]; \
++      then \
++              sccsEdit $(OBJECTNAME).c; \
++      else \
++              echo "Source files are already editable"; \
++      fi
++      @if [ -r wish/$(OBJECTNAME).wish ]; \
++      then \
++              cd wish; sccsEdit $(OBJECTNAME).wish; \
++      else \
++              echo "Source files (wish) are already editable."; \
++      fi
++      @if [ -r ruby/$(OBJECTNAME).rb ]; \
++      then \
++              cd ruby; sccsEdit $(OBJECTNAME).rb; \
++      else \
++              echo "Source files (ruby) are already editable."; \
++      fi
++      @if [ -r perl/$(OBJECTNAME).pl ]; \
++      then \
++              cd perl; sccsEdit $(OBJECTNAME).pl ; \
++      else \
++              echo "Source files (perl) are already editable."; \
++      fi
++      @if [ -r ../Config/OptionControlFile ]; \
++      then \
++              cd ../Config; sccsEdit OptionControlFile; \
++      else \
++              echo "OptionControlFile are already editable."; \
++      fi
++      
++unedit:
++      @if [ -w $(OBJECTNAME).c ]; \
++      then \
++              sccsUnedit $(OBJECTNAME).c; \
++      else \
++              echo "Source files are not editable"; \
++      fi
++      @if [ -w wish/$(OBJECTNAME).wish ]; \
++      then \
++              cd wish; sccsUnedit $(OBJECTNAME).wish; \
++      else \
++              echo "Source files (wish) are not editable."; \
++      fi
++      @if [ -w ruby/$(OBJECTNAME).rb]; \
++      then \
++              cd ruby; sccsUnedit $(OBJECTNAME).rb; \
++      else \
++              echo "Source files (ruby) are not editable."; \
++      fi
++      @if [ -w perl/$(OBJECTNAME).pl ]; \
++      then \
++              cd perl; sccsUnedit $(OBJECTNAME).pl ; \
++      else \
++              echo "Source files (ruby) are not editable."; \
++      fi
++      @if [ -w ../Config/OptionControlFile ]; \
++      then \
++              cd ../Config; sccsUnedit OptionControlFile; \
++      else \
++              echo "OptionControlFile are not editable."; \
++      fi
++      
++report:
++      @if [ -r $(OBJECTNAME).c ]; \
++      then \
++              sccsReport $(OBJECTNAME).c; \
++      else \
++              echo "Source files are already editable"; \
++      fi
++      @if [ -r wish/$(OBJECTNAME).wish ]; \
++      then \
++              cd wish; sccsReport $(OBJECTNAME).wish; \
++      else \
++              echo "Source files (wish) are already editable."; \
++      fi
++      @if [ -r ruby/$(OBJECTNAME).rb ]; \
++      then \
++              cd ruby; sccsReport $(OBJECTNAME).rb; \
++      else \
++              echo "Source files (ruby) are already editable."; \
++      fi
++      @if [ -r perl/$(OBJECTNAME).pl ] ; \
++      then \
++              cd perl; sccsReport $(OBJECTNAME).pl ; \
++      else \
++              echo "Source files (perl) are already editable."; \
++      fi
++      @if [ -r ../Config/OptionControlFile ]; \
++      then \
++              cd ../Config; sccsReport OptionControlFile; \
++      else \
++              echo "OptionControlFile are already editable."; \
++      fi
++
++clean : 
++      rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
++              $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
++              $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
++              $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
++              $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
++              *.bak *.$(OSTYPE) core
++
++install: install-bin install-doc install-wish install-ruby install-shell install-perl
++      @if [ dummy$(KHOROS_KENGOBJ) != dummy ]  ; \
++      then \
++              if [ -x $(KHOROS_KGENOBJ) ] ;  \
++              then \
++                      make install-khoros ; \
++              fi; \
++      fi 
++
++install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME) 
++
++$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME) 
++      @echo ---- Installing to bin
++      @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
++      @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
++      then \
++              mkdir $(DSTDIR)/$(OSTYPE); \
++      fi
++      @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
++      then \
++              echo "Compilation is complete"; \
++              $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
++              $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
++              $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
++      else \
++              echo "Compilation is incomplete. $(OBJECTNAME)"; \
++      fi
++      @echo ---- end of bin
++
++install-wish:
++      @if [ -d wish ]; \
++      then \
++              echo "---- Tcl/Tk file Install"; \
++              if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
++              then \
++                      mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
++              fi ; \
++              $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
++              $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/*  ;\
++              touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
++              $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
++              echo "---- Tcl/Tk file Installed";\
++      fi
++
++install-ruby:
++      @if [ -d ruby ]; \
++      then \
++              echo "---- Ruby/Tk file Install"; \
++              if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
++              then \
++                      mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
++              fi ; \
++              $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
++              $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
++              echo "---- Ruby/Tk file Installed"; \
++      fi
++
++install-perl:
++      @if [ -d perl ]; \
++      then \
++              echo "---- Perl/Tk file Install"; \
++              if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
++              then \
++                      mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
++              fi; \
++              $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
++              $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
++              echo "---- Perl/Tk file Installed"; \
++      fi
++
++install-shell:
++      @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
++      then \
++              mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
++      fi
++      @if [ -d shell ]; \
++      then \
++              echo "---- Shell file Install"; \
++              if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
++              then \
++                      mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
++              fi ; \
++              $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
++              $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
++              echo "---- Shell file Installed"; \
++      fi
++
++install-khoros:
++      @echo Installing to khoros
++      @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
++      then \
++              echo kgenobj;\
++              $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form  -lang ksh ; \
++      fi
++      @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
++      then \
++              $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
++      fi
++      @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
++      then \
++              $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
++              if [ $?  ] ; \
++              then \
++                      echo "-- setting khoros ---" ; \
++                      if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
++                      then \
++                              $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
++                              $(RM) -f $(OBJECTNAME).pane ; \
++                              $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
++                              $(CD) ../../ ; \
++                              $(CHMOD) -R 555 $(OBJECTNAME); \
++                      else \
++                              echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
++                      fi ; \
++              else \
++                      echo "Failed !!: Cannot chage mode in installing  $(OBJECTNAME) to khoros system"; \
++              fi ; \
++              echo "-- end of khoros-installing"; \
++      fi
++
++install-doc: html 
++      @if [ ! -d $(DSTDOC)/SmallTools ]; \
++      then \
++              mkdir $(DSTDOC)/SmallTools ;\
++      fi
++      @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
++      then \
++              $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
++      fi
++      @$(CP) $(OBJECTNAME).html  $(DSTDOC)/SmallTools/$(OBJECTNAME).html
++      @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
++      @if [ -f ../doc/*.html ]; \
++      then \
++              $(CP) ../doc/*.html  $(DSTDOC)/SmallTools/ ;\
++      fi
++      @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
++      @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
++      then \
++              cd $(DSTDOC)/SmallTools; $(MAKE); \
++      fi
++
++html: $(OBJECTNAME).html
++
++configFileRead:
++      @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
++
++$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
++      @echo creating html
++      @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
++      @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
++      @$(RM) $(OBJECTNAME).html.tmp
++
++$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
++      @ln -s -f ../sbin/MachineIndependent $@
++
++depend::
++      @echo dependency checking now
++      @if [ ! -L $(OSTYPE) ] ; then \
++              moveHostdependent; \
++      fi
++      rm -f $(OSTYPE)/.Depend 
++      #echo C
++      @if [ -f $(OBJECTNAME).c ] ; \
++      then \
++              echo "dependency: *.c"; \
++              echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c   ; \
++                   $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c                  >> $(OSTYPE)/.Depend ; \
++      fi
++      #echo CC
++      @if [ -f $(OBJECTNAME).cc ] ; \
++      then \
++              echo "dependency: *.cc"; \
++              echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
++                   $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
++      fi
++      @if [ -f $(OBJECTNAME).ccm ] ; \
++      then \
++              echo "dependency: *.ccm"; \
++              echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
++                   $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
++      fi
++      @if [ -f $(OBJECTNAME).cu ] ; \
++      then \
++              echo "dependency: *.cu"; \
++              echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
++                   $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
++      fi
++
++update:../Config/OptionControlFile
++      maketool $(CLASSNAME) $(OBJECTNAME) update
++
++changeName::
++
++Test:$(OSTYPE)/$(OBJECTNAME) TestDir
++      @if [ -f test/Makefile ] ; \
++      then \
++              cd test; make ; \
++      else \
++              echo "No test Makefile"; \
++      fi
++
++TestDir::
++      @if [ ! -d test ] ; \
++      then \
++              echo "Creating test dir"; \
++              mkdir  test; \
++      fi
++      @if [ ! -f test/Makefile ] ; \
++      then \
++              echo "Creating Makefile"; \
++              cd test; \
++              protoTestMakefileCreate; \
++      fi
++      @if [ ! -d test/data ]; \
++      then \
++              mkdir $(EOSHOME)/data/$(OBJECTNAME); \
++              cd test; \
++              ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
++      fi 
++
++tar::
++      cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
++                                                           ../bin/*/$(OBJECTNAME).* \
++                                                           ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
++                              ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
++
++-include $(OSTYPE)/.Depend
++-include ../Config/Target.inc

diff --cc src/Tools/simulation/probabilityDensityFunction/src/X86MAC64
index 0000000,0000000..6bc6367
new file mode 120000 (symlink)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/src/X86MAC64
@@@ -1,0 -1,0 +1,1 @@@
++../../../../../hostdepend/X86MAC64/src/Tools/simulation/probabilityDensityFunction/src/X86MAC64

diff --cc src/Tools/simulation/probabilityDensityFunction/src/argCheck.c
index 0000000,0000000..67d1d74
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/src/argCheck.c
@@@ -1,0 -1,0 +1,96 @@@
++#include <stdio.h>
++#include <stdlib.h>
++#include <string.h>
++#include <math.h>
++#include "../inc/config.h"
++#include "genUtil.h"
++#include "String.h"
++#include "File.h"
++#include "Memory.h"
++
++
++void
++argCheck(probabilityDensityFunctionInfo* info, int argc, char* argv[])
++{
++    long i;
++    char s[1024];
++    FILE* fpt;
++    
++    if(NULL==(fpt=fopen(".EosLog", "a+"))) { 
++        
++    } else {
++        for(i=0; i<argc; i++) {
++            fprintf(fpt, "%s ", argv[i]);
++        }
++        fprintf(fpt, "\n");
++        fclose(fpt);
++    }
++    for(i=1; i<argc; i++) {
++        if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
++            SSWITCH(argv[i]+OPTION_POS)
++                SCASE("i") {
++                    if(i+1<argc) {
++                        info->In = stringGetNthWord(argv[i+1], 1, " ,");
++                        i++;
++                        info->flagIn++;
++                    } else {
++                        usage(argv[0]);
++                        exit(EXIT_FAILURE);
++                    }
++                    SBREAK;
++                }
++                SCASE("o") {
++                    if(i+1<argc) {
++                        info->Out = stringGetNthWord(argv[i+1], 1, " ,");
++                        i++;
++                        info->flagOut++;
++                    } else {
++                        usage(argv[0]);
++                        exit(EXIT_FAILURE);
++                    }
++                    SBREAK;
++                }
++                SCASE("c") {
++                    if(i+1<argc) {
++                        info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
++                        i++;
++                        info->flagconfigFile++;
++                    } else {
++                        usage(argv[0]);
++                        exit(EXIT_FAILURE);
++                    }
++                    SBREAK;
++                }
++                SCASE("m") {
++                    if(i+1<argc) {
++                        info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
++                        i++;
++                        info->flagmode++;
++                    } else {
++                        usage(argv[0]);
++                        exit(EXIT_FAILURE);
++                    }
++                    SBREAK;
++                }
++                SCASE("h") {
++                    usage(argv[0]);
++                    exit(EXIT_SUCCESS);
++                    break;
++                }
++                SCASE("html") {
++                    htmlBeforeUsage(argv[0]);
++                    usage(argv[0]);
++                    htmlAfterUsage(argv[0]);
++                    exit(EXIT_SUCCESS);
++                    break;
++                }
++                SDEFAULT {
++                    fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
++                    usage(argv[0]);
++                    exit(EXIT_FAILURE);
++                    break;
++                }
++            SSWITCHEND;
++        } 
++    } 
++} 

diff --cc src/Tools/simulation/probabilityDensityFunction/src/init.c
index 0000000,0000000..890f197
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/src/init.c
@@@ -1,0 -1,0 +1,91 @@@
++#include <stdio.h>
++#include <stdlib.h>
++#include <string.h>
++#include <math.h>
++#include "../inc/config.h"
++#include "genUtil.h"
++#include "String.h"
++#include "File.h"
++#include "Memory.h"
++
++
++void
++init0(probabilityDensityFunctionInfo* info)
++{
++    info->fptIn = NULL;    info->flagIn = 0;
++    info->fptOut = NULL;    info->flagOut = 0;
++    info->fptconfigFile = NULL;    info->flagconfigFile = 0;
++    info->mode = 0;    info->flagmode = 0;
++}
++
++void
++init1(probabilityDensityFunctionInfo* info)
++{
++    char s[1024];
++    int i;
++    if(!info->flagIn) {
++        stringGetFromFile(s, "In", stdin, stdout, 0);
++        info->In = stringGetNthWord(s, 1, " ,\t");
++        info->flagIn++;
++    }
++    if(info->flagIn) {
++        info->fptIn = fileOpen(info->In, "r");
++    }
++    
++    if(!info->flagOut) {
++        stringGetFromFile(s, "Out", stdin, stdout, 0);
++        info->Out = stringGetNthWord(s, 1, " ,\t");
++        info->flagOut++;
++    }
++    if(info->flagOut) {
++        info->fptOut = fileOpen(info->Out, "w");
++    }
++    
++    if(info->flagconfigFile) {
++        info->fptconfigFile = fileOpen(info->configFile, "r");
++    }
++    
++    if(info->flagmode) {
++    }
++    
++}
++#ifdef KHOROS
++#include <stdio.h>
++#include "bootstrap.h"
++#include "dataserv.h"
++#include "datamanip.h"
++extern void func_usage_additions(void);
++extern void func_free_args(kexit_status status, kaddr client_data);
++extern void func_get_args(kform* pane);
++
++void
++func_usage_additions(void)
++{
++}
++void
++func_free_args(kexit_status status, kaddr client_data)
++{
++}
++void
++func_get_args(kform* pane)
++{
++}
++void
++khorosInit(int argc, char* argv[])
++{
++    char* eospath;
++    char  panepath[1024];
++    FILE* fpt;
++    
++    eospath = getenv("EOS_HOME");
++    sprintf(panepath, "%s/src/Tools/simulation/probabilityDensityFunction/src/probabilityDensityFunction.pane", eospath);
++    khoros_initialize(argc, argv, "EOS");
++    fpt = fopen(panepath, "r");    if(NULL!=fpt) {
++        fclose(fpt);
++        kclui_initialize(panepath, KGEN_NONE, "EOS", "probabilityDensityFunction",
++                     func_usage_additions,
++                     func_get_args,
++                     func_free_args);
++    }
++}
++#endif /* KHOROS */ 

diff --cc src/Tools/simulation/probabilityDensityFunction/src/probabilityDensityFunction.c
index 0000000,0000000..0ac5367
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/src/probabilityDensityFunction.c
@@@ -1,0 -1,0 +1,52 @@@
++/*
++# probabilityDensityFunction : $Revision$  
++# $Date$ 
++# Created by $Author$
++# Usage : probabilityDensityFunction
++# Attention
++#   $Loccker$
++#     $State$ 
++#
++*/
++#include <stdio.h>
++#include <stdlib.h>
++#include <string.h>
++#include <math.h>                  
++#define GLOBAL_DECLARATION
++#include "../inc/config.h"
++
++#define DEBUG
++#include "genUtil.h"
++
++/*
++typedef struct lprobabilityDensityFunctionInfo {
++      float a;
++      int   b;
++} lprobabilityDensityFunctionInfo;
++*/
++
++typedef enum lprobabilityDensityFunctionMode {
++      probabilityFunctionExponentialDistribution=0,
++      probabilityFunctionPoissonDistribution=1,
++      probabllityFunctionErlangDistribution=2
++} lprobabilityDensityFunctionMode;
++
++int
++main(int argc, char* argv[]) 
++{
++      probabilityDensityFunctionInfo info;
++
++      init0(&info);
++    argCheck(&info, argc, argv);
++    init1(&info);
++
++      DEBUGPRINT("Program Start\n");
++
++      exit(EXIT_SUCCESS);
++}
++
++void
++additionalUsage()
++{
++      fprintf(stderr, "----- Additional Usage -----\n");
++}

diff --cc src/Tools/simulation/probabilityDensityFunction/src/probabilityDensityFunction.pane
index 0000000,0000000..141a77a
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/src/probabilityDensityFunction.pane
@@@ -1,0 -1,0 +1,16 @@@
++-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
++  -M 1 1 52x1+0+0 +1+0 ' ' subform
++    -P 1 0 52x1+0+1 +0+0 ' ' probabilityDensityFunction
++      -D 1 0 9x1+0+0 'Options' _gui_options
++        -H 1  6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
++        -E
++        -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/probabilityDensityFunction
++        -H 1  5x1+41+0 'Help' 'help page' $EOS/src/Tools/simulation/probabilityDensityFunction/doc/probabilityDensityFunction.doc help
++        -Q 1 0 5.25x1+47+0 'Close'
++        -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'InputDataFile' i
++        -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'OutputDataFile' o
++        -I 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'configFile' 'ConfigurationFile' c
++        -i 1 0 1 0 0 -1x1+1+6.000000 0 0 0 0 0 'mode' 'Mode' m
++    -E
++  -E
++-E

diff --cc src/Tools/simulation/probabilityDensityFunction/src/usage.c
index 0000000,0000000..c3e4fc6
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/src/usage.c
@@@ -1,0 -1,0 +1,36 @@@
++#include <stdio.h>
++#include <stdlib.h>
++#include "../inc/config.h"
++
++void
++usage(char* thisProgram)
++{
++    fprintf(stderr, "Usage: %s\n", thisProgram);
++    fprintf(stderr, "Options:\n");
++    fprintf(stderr, "    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile\n");
++    fprintf(stderr, "    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile\n");
++    fprintf(stderr, "    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile\n");
++    fprintf(stderr, "    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode\n");
++    additionalUsage();
++}
++
++void
++htmlBeforeUsage(char* thisProgram)
++{
++    fprintf(stderr, "<HTML>\n");
++    fprintf(stderr, "<HEAD>\n");
++    fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
++    fprintf(stderr, "</HEAD>\n");
++    fprintf(stderr, "<BODY>\n");
++    fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
++    fprintf(stderr, "<H2>Usage</H2>\n");
++    fprintf(stderr, "<PRE>\n");
++}
++
++void
++htmlAfterUsage(char* thisProgram)
++{
++    fprintf(stderr, "</PRE>\n");
++    fprintf(stderr, "</BODY>\n");
++    fprintf(stderr, "</HTML>\n");
++}

diff --cc src/Tools/simulation/probabilityDensityFunction/src/util.c
index 0000000,0000000..ee5e5f2
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/simulation/probabilityDensityFunction/src/util.c
@@@ -1,0 -1,0 +1,4 @@@
++#include <stdio.h>
++#include <stdlib.h>
++#include "../inc/config.h"
++