<div id="method-M000261" class="method-detail">
<a name="find_close_atoms"></a>
<div class="method-heading">
-<span class="method-name">find_close_atoms(atom, limit = 1.2) → Array of Integers<br />
+<span class="method-name">find_close_atoms(atom, limit = 1.2, radius = 0.77) → Array of Integers<br />
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<div class="method-description">
An array of atom indices is returned. If no atoms are found, an empty array is returned.
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<p>
-The atom argument can also be a <a href="Vector3D.html">Vector3D</a> (or any other object that can be converted to a <a href="Vector3D.html">Vector3D</a>), representing cartesian coordinates.
+The atom argument can also be a <a href="Vector3D.html">Vector3D</a> (or any other object that can be converted to a <a href="Vector3D.html">Vector3D</a>), representing cartesian coordinates. In this case, the van der Waals of the atom can also be specified (the default value = 0.77 represents the van der Waals radius of carbon).
</p>
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