Modified for X86LINUX65:

	new file:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierNeighborCorrelation
	modified:   hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierShellCorrelation

diff --git a/hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierNeighborCorrelation b/hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierNeighborCorrelation
new file mode 100755 (executable)
index 0000000..b1a8cb2
Binary files /dev/null and b/hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierNeighborCorrelation differ

diff --git a/hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierShellCorrelation b/hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierShellCorrelation
index 3ab8ec8..51d7a6a 100755 (executable)
Binary files a/hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierShellCorrelation and b/hostdepend/X86LINUX64/bin/X86LINUX64/mrcImageFourierShellCorrelation differ

diff --git a/hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a b/hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a
index 622ff16..694c199 100644 (file)
Binary files a/hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a and b/hostdepend/X86LINUX64/lib/X86LINUX64/libEosObjects.a differ

diff --git a/hostdepend/X86LINUX64/lib/X86LINUX64/libmrcImage.a b/hostdepend/X86LINUX64/lib/X86LINUX64/libmrcImage.a
index 3c0c259..4b0e7c8 100644 (file)
Binary files a/hostdepend/X86LINUX64/lib/X86LINUX64/libmrcImage.a and b/hostdepend/X86LINUX64/lib/X86LINUX64/libmrcImage.a differ

diff --git a/hostdepend/X86LINUX64/lib/X86LINUX64/shared/lmrcImageFourierNeighborCorrelation.sharedo b/hostdepend/X86LINUX64/lib/X86LINUX64/shared/lmrcImageFourierNeighborCorrelation.sharedo
new file mode 100644 (file)
index 0000000..721fb07
Binary files /dev/null and b/hostdepend/X86LINUX64/lib/X86LINUX64/shared/lmrcImageFourierNeighborCorrelation.sharedo differ

diff --git a/hostdepend/X86LINUX64/lib/X86LINUX64/shared/lmrcImageFourierShellCorrelation.sharedo b/hostdepend/X86LINUX64/lib/X86LINUX64/shared/lmrcImageFourierShellCorrelation.sharedo
index aca97be..f3a24a7 100644 (file)
Binary files a/hostdepend/X86LINUX64/lib/X86LINUX64/shared/lmrcImageFourierShellCorrelation.sharedo and b/hostdepend/X86LINUX64/lib/X86LINUX64/shared/lmrcImageFourierShellCorrelation.sharedo differ

diff --git a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/.Depend b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/.Depend
index ac8c6d5..df3d097 100644 (file)
--- a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/.Depend
+++ b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/.Depend
@@ -55,6 +55,7 @@ X86LINUX64/lmrcImageFeatureExtractionRunLength.o:lmrcImageFeatureExtractionRunLe
 X86LINUX64/lmrcImageFilterCreate.o:lmrcImageFilterCreate.o
 X86LINUX64/lmrcImageFirstNoiseReductionByRelaxation.o:lmrcImageFirstNoiseReductionByRelaxation.o
 X86LINUX64/lmrcImageFloating.o:lmrcImageFloating.o
+X86LINUX64/lmrcImageFourierNeighborCorrelation.o:lmrcImageFourierNeighborCorrelation.o
 X86LINUX64/lmrcImageFourierPowerSpectrum.o:lmrcImageFourierPowerSpectrum.o
 X86LINUX64/lmrcImageFourierShellCorrelation.o:lmrcImageFourierShellCorrelation.o
 X86LINUX64/lmrcImageHighPassFilter.o:lmrcImageHighPassFilter.o
@@ -1967,6 +1968,42 @@ lmrcImageFloating.o: lmrcImageFloating.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h
+lmrcImageFourierNeighborCorrelation.o: \
+ lmrcImageFourierNeighborCorrelation.c \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ lmrcImageFourierNeighborCorrelation.h ../inc/mrcImage.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h
 lmrcImageFourierPowerSpectrum.o: lmrcImageFourierPowerSpectrum.c \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \

diff --git a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/.Source b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/.Source
index 7163101..f225def 100644 (file)
--- a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/.Source
+++ b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/.Source
@@ -56,6 +56,7 @@ lmrcImageFeatureExtractionRunLength.c \
 lmrcImageFilterCreate.c \
 lmrcImageFirstNoiseReductionByRelaxation.c \
 lmrcImageFloating.c \
+lmrcImageFourierNeighborCorrelation.c \
 lmrcImageFourierPowerSpectrum.c \
 lmrcImageFourierShellCorrelation.c \
 lmrcImageHighPassFilter.c \
@@ -221,6 +222,7 @@ lmrcImageFeatureExtractionRunLength.o \
 lmrcImageFilterCreate.o \
 lmrcImageFirstNoiseReductionByRelaxation.o \
 lmrcImageFloating.o \
+lmrcImageFourierNeighborCorrelation.o \
 lmrcImageFourierPowerSpectrum.o \
 lmrcImageFourierShellCorrelation.o \
 lmrcImageHighPassFilter.o \
@@ -386,6 +388,7 @@ lmrcImageFeatureExtractionRunLength.sharedo \
 lmrcImageFilterCreate.sharedo \
 lmrcImageFirstNoiseReductionByRelaxation.sharedo \
 lmrcImageFloating.sharedo \
+lmrcImageFourierNeighborCorrelation.sharedo \
 lmrcImageFourierPowerSpectrum.sharedo \
 lmrcImageFourierShellCorrelation.sharedo \
 lmrcImageHighPassFilter.sharedo \
@@ -551,6 +554,7 @@ X86LINUX64/lmrcImageFeatureExtractionRunLength.o \
 X86LINUX64/lmrcImageFilterCreate.o \
 X86LINUX64/lmrcImageFirstNoiseReductionByRelaxation.o \
 X86LINUX64/lmrcImageFloating.o \
+X86LINUX64/lmrcImageFourierNeighborCorrelation.o \
 X86LINUX64/lmrcImageFourierPowerSpectrum.o \
 X86LINUX64/lmrcImageFourierShellCorrelation.o \
 X86LINUX64/lmrcImageHighPassFilter.o \
@@ -716,6 +720,7 @@ X86LINUX64/lmrcImageFeatureExtractionRunLength.sharedo \
 X86LINUX64/lmrcImageFilterCreate.sharedo \
 X86LINUX64/lmrcImageFirstNoiseReductionByRelaxation.sharedo \
 X86LINUX64/lmrcImageFloating.sharedo \
+X86LINUX64/lmrcImageFourierNeighborCorrelation.sharedo \
 X86LINUX64/lmrcImageFourierPowerSpectrum.sharedo \
 X86LINUX64/lmrcImageFourierShellCorrelation.sharedo \
 X86LINUX64/lmrcImageHighPassFilter.sharedo \
@@ -881,6 +886,7 @@ lmrcImageFeatureExtractionRunLength.debugo \
 lmrcImageFilterCreate.debugo \
 lmrcImageFirstNoiseReductionByRelaxation.debugo \
 lmrcImageFloating.debugo \
+lmrcImageFourierNeighborCorrelation.debugo \
 lmrcImageFourierPowerSpectrum.debugo \
 lmrcImageFourierShellCorrelation.debugo \
 lmrcImageHighPassFilter.debugo \
@@ -1043,6 +1049,7 @@ X86LINUX64/lmrcImageFeatureExtractionRunLength.debugo \
 X86LINUX64/lmrcImageFilterCreate.debugo \
 X86LINUX64/lmrcImageFirstNoiseReductionByRelaxation.debugo \
 X86LINUX64/lmrcImageFloating.debugo \
+X86LINUX64/lmrcImageFourierNeighborCorrelation.debugo \
 X86LINUX64/lmrcImageFourierPowerSpectrum.debugo \
 X86LINUX64/lmrcImageFourierShellCorrelation.debugo \
 X86LINUX64/lmrcImageHighPassFilter.debugo \
@@ -1208,6 +1215,7 @@ lmrcImageFeatureExtractionRunLength.cudagdb.o \
 lmrcImageFilterCreate.cudagdb.o \
 lmrcImageFirstNoiseReductionByRelaxation.cudagdb.o \
 lmrcImageFloating.cudagdb.o \
+lmrcImageFourierNeighborCorrelation.cudagdb.o \
 lmrcImageFourierPowerSpectrum.cudagdb.o \
 lmrcImageFourierShellCorrelation.cudagdb.o \
 lmrcImageHighPassFilter.cudagdb.o \
@@ -1373,6 +1381,7 @@ X86LINUX64/lmrcImageFeatureExtractionRunLength.cudagdb.o \
 X86LINUX64/lmrcImageFilterCreate.cudagdb.o \
 X86LINUX64/lmrcImageFirstNoiseReductionByRelaxation.cudagdb.o \
 X86LINUX64/lmrcImageFloating.cudagdb.o \
+X86LINUX64/lmrcImageFourierNeighborCorrelation.cudagdb.o \
 X86LINUX64/lmrcImageFourierPowerSpectrum.cudagdb.o \
 X86LINUX64/lmrcImageFourierShellCorrelation.cudagdb.o \
 X86LINUX64/lmrcImageHighPassFilter.cudagdb.o \

diff --git a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.a b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.a
index 3c0c259..4b0e7c8 100644 (file)
Binary files a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.a and b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.a differ

diff --git a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.debug.a b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.debug.a
index 145d223..a1152ea 100644 (file)
Binary files a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.debug.a and b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/libmrcImage.debug.a differ

diff --git a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageFourierNeighborCorrelation.sharedo b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageFourierNeighborCorrelation.sharedo
new file mode 100644 (file)
index 0000000..721fb07
Binary files /dev/null and b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageFourierNeighborCorrelation.sharedo differ

diff --git a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageFourierShellCorrelation.sharedo b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageFourierShellCorrelation.sharedo
index aca97be..f3a24a7 100644 (file)
Binary files a/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageFourierShellCorrelation.sharedo and b/hostdepend/X86LINUX64/src/Objects/DataManip/mrcImage/src/X86LINUX64/lmrcImageFourierShellCorrelation.sharedo differ

diff --git a/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64/.Depend b/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64/.Depend
new file mode 100644 (file)
index 0000000..e57fde8
--- /dev/null
+++ b/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64/.Depend
@@ -0,0 +1,132 @@
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageFourierNeighborCorrelation.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+init.o: init.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageFourierNeighborCorrelation.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+mrcImageFourierNeighborCorrelation.o: \
+ mrcImageFourierNeighborCorrelation.c /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageFourierNeighborCorrelation.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/lmrcImageFourierNeighborCorrelation.h \
+ /home/people/tacyas/Eos/include/mrcImage.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImageFourierNeighborCorrelation.h
+util.o: util.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImageFourierNeighborCorrelation.h

diff --git a/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64/Makefile b/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64/Makefile
new file mode 100755 (executable)
index 0000000..ec61247
--- /dev/null
+++ b/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64/Makefile
@@ -0,0 +1,114 @@
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES   = \
+                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
+
+LIBFILESDEBUG   = \
+                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
+
+SRCC  = \
+                       $(OBJECTNAME).c \
+                       init.c \
+                       argCheck.c \
+                       usage.c  \
+                       util.c 
+
+SRCCXX  = \
+                       $(OBJECTNAME).cc \
+                       init.cc \
+                       argCheck.cc \
+                       usage.cc  \
+                       util.cc 
+
+MODULES    = \
+                       $(OBJECTNAME).o \
+                       init.o \
+                       argCheck.o \
+                       usage.o  \
+                       util.o 
+
+REALMODULES    = \
+                       $(OSTYPE)/$(OBJECTNAME).o \
+                       $(OSTYPE)/init.o \
+                       $(OSTYPE)/argCheck.o \
+                       $(OSTYPE)/usage.o \
+                       $(OSTYPE)/util.o 
+
+MODULESDEBUG    = \
+                       $(OBJECTNAME).debugo \
+                       init.debugo \
+                       argCheck.debugo \
+                       usage.debugo  \
+                       util.debugo 
+
+MODULESCUDAGDB    = \
+                       $(OBJECTNAME).cudagdb.o \
+                       init.cudagdb.o \
+                       argCheck.cudagdb.o \
+                       usage.cudagdb.o  \
+                       util.cudagdb.o 
+
+REALMODULESDEBUG    = \
+                       $(OSTYPE)/$(OBJECTNAME).debugo \
+                       $(OSTYPE)/init.debugo \
+                       $(OSTYPE)/argCheck.debugo \
+                       $(OSTYPE)/usage.debugo \
+                       $(OSTYPE)/util.debugo 
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+       fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+       echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+       $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include  $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc

diff --git a/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64/mrcImageFourierNeighborCorrelation b/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64/mrcImageFourierNeighborCorrelation
new file mode 100755 (executable)
index 0000000..b1a8cb2
Binary files /dev/null and b/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64/mrcImageFourierNeighborCorrelation differ

diff --git a/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64/mrcImageFourierShellCorrelation b/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64/mrcImageFourierShellCorrelation
index 3ab8ec8..51d7a6a 100755 (executable)
Binary files a/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64/mrcImageFourierShellCorrelation and b/hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64/mrcImageFourierShellCorrelation differ

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHA b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHA
new file mode 120000 (symlink)
index 0000000..acffc52
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHA
@@ -0,0 +1 @@
+../../../../../hostdepend/ALPHA/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHA
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHALINUX b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHALINUX
new file mode 120000 (symlink)
index 0000000..720cc4c
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHALINUX
@@ -0,0 +1 @@
+../../../../../hostdepend/ALPHALINUX/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHALINUX
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHALINUX5 b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHALINUX5
new file mode 120000 (symlink)
index 0000000..4a05920
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHALINUX5
@@ -0,0 +1 @@
+../../../../../hostdepend/ALPHALINUX5/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHALINUX5
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHAOSF1 b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHAOSF1
new file mode 120000 (symlink)
index 0000000..3cd1136
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHAOSF1
@@ -0,0 +1 @@
+../../../../../hostdepend/ALPHAOSF1/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/ALPHAOSF1
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/CELLLINUX64 b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/CELLLINUX64
new file mode 120000 (symlink)
index 0000000..ba47d66
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/CELLLINUX64
@@ -0,0 +1 @@
+../../../../../hostdepend/CELLLINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/CELLLINUX64
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/HP b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/HP
new file mode 120000 (symlink)
index 0000000..3485519
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/HP
@@ -0,0 +1 @@
+../../../../../hostdepend/HP/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/HP
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/I386LINUX b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/I386LINUX
new file mode 120000 (symlink)
index 0000000..92cb408
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/I386LINUX
@@ -0,0 +1 @@
+../../../../../hostdepend/I386LINUX/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/I386LINUX
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/I686LINUX b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/I686LINUX
new file mode 120000 (symlink)
index 0000000..620e065
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/I686LINUX
@@ -0,0 +1 @@
+../../../../../hostdepend/I686LINUX/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/I686LINUX
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/SGI b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/SGI
new file mode 120000 (symlink)
index 0000000..2866639
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/SGI
@@ -0,0 +1 @@
+../../../../../hostdepend/SGI/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/SGI
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/SPARC b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/SPARC
new file mode 120000 (symlink)
index 0000000..cdb43d5
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/SPARC
@@ -0,0 +1 @@
+../../../../../hostdepend/SPARC/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/SPARC
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64 b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64
new file mode 120000 (symlink)
index 0000000..d6f9d6e
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64
@@ -0,0 +1 @@
+../../../../../hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/X86LINUX64
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.html b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.html
index 74dd73d..d046bb9 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.html
+++ b/src/Tools/mrcImage/mrcImageFourierNeighborCorrelation/src/mrcImageFourierNeighborCorrelation.html
@@ -11,6 +11,8 @@ Options:
     [-i[nput]            In                  (NULL      ).as(inFile::mrcImage    ) ] :Essential :Input
     [-o[utput]           Out                 (stdout    ).as(outFile::ASCII      ) ] :Optional  :OutputDataFile
     [-d[elta]            delta               (0.0       ).as(Real                ) ] :Optional  :Mode
+    [-C[enter]           Centre              (0         ).as(Integer             ) ] :Optional  :CentreMode
+    [-M[ode]             GetMode             (0         ).as(Integer             ) ] :Optional  :PixelDataGetHowToGet: InterpolationMode 
     [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
     [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
 ----- Additional Usage -----