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Please enter the commit message for your changes. Lines starting v2.4.01p339
authorTakuo Yasunaga <yasunaga@bio.kyutech.ac.jp>
Sun, 21 Nov 2021 03:10:27 +0000 (12:10 +0900)
committerTakuo Yasunaga <yasunaga@bio.kyutech.ac.jp>
Sun, 21 Nov 2021 03:10:27 +0000 (12:10 +0900)
 with '#' will be ignored, and an empty message aborts the commit.

 On branch master
 Your branch is up to date with 'origin/master'.

 Changes to be committed:
modified:   src/Objects/DataManip/Makefile
new file:   src/Objects/DataManip/starFile/Config/Define.inc
new file:   src/Objects/DataManip/starFile/Config/Target.inc
new file:   src/Objects/DataManip/starFile/Makefile
new file:   src/Objects/DataManip/starFile/doc/.footer
new file:   src/Objects/DataManip/starFile/doc/.header
new file:   src/Objects/DataManip/starFile/doc/.starFile.html
new file:   src/Objects/DataManip/starFile/doc/Makefile
new file:   src/Objects/DataManip/starFile/inc/Makefile
new file:   src/Objects/DataManip/starFile/src/.CCHeader
new file:   src/Objects/DataManip/starFile/src/.CHeader
new file:   src/Objects/DataManip/starFile/src/.Ruby
new file:   src/Objects/DataManip/starFile/src/.Wish
new file:   src/Objects/DataManip/starFile/src/Makefile
new file:   src/Objects/DataManip/starFile/src/X86MAC64
modified:   src/Objects/Makefile
modified:   src/Tools/Config/Define.inc
modified:   src/Tools/mrcImage/.Source
modified:   src/Tools/mrcImage/.Source.org
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/Define.inc
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/OptionControlFile
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/Target.inc
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Makefile
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/doc/Makefile
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/inc/config.h
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/inc/mrcImageBlurByTemperatureFactor.h
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/.Depend
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/.Source
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/Makefile
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/X86MAC64
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/argCheck.c
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/init.c
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/mrcImageBlurByTemperatureFactor.c
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/mrcImageBlurByTemperatureFactor.pane
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/test/Makefile
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/test/data
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/usage.c
new file:   src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/util.c

 Changes not staged for commit:
modified:   include/eosMATH.h

38 files changed:
src/Objects/DataManip/Makefile [changed mode: 0755->0644]
src/Objects/DataManip/starFile/Config/Define.inc [new file with mode: 0755]
src/Objects/DataManip/starFile/Config/Target.inc [new file with mode: 0755]
src/Objects/DataManip/starFile/Makefile [new file with mode: 0755]
src/Objects/DataManip/starFile/doc/.footer [new file with mode: 0755]
src/Objects/DataManip/starFile/doc/.header [new file with mode: 0755]
src/Objects/DataManip/starFile/doc/.starFile.html [new file with mode: 0755]
src/Objects/DataManip/starFile/doc/Makefile [new file with mode: 0755]
src/Objects/DataManip/starFile/inc/Makefile [new file with mode: 0755]
src/Objects/DataManip/starFile/src/.CCHeader [new file with mode: 0755]
src/Objects/DataManip/starFile/src/.CHeader [new file with mode: 0755]
src/Objects/DataManip/starFile/src/.Ruby [new file with mode: 0755]
src/Objects/DataManip/starFile/src/.Wish [new file with mode: 0755]
src/Objects/DataManip/starFile/src/Makefile [new file with mode: 0755]
src/Objects/DataManip/starFile/src/X86MAC64 [new symlink]
src/Objects/Makefile [changed mode: 0755->0644]
src/Tools/Config/Define.inc
src/Tools/mrcImage/.Source
src/Tools/mrcImage/.Source.org
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/Define.inc [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/OptionControlFile [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/Target.inc [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Makefile [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/doc/Makefile [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/inc/config.h [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/inc/mrcImageBlurByTemperatureFactor.h [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/.Depend [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/.Source [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/Makefile [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/X86MAC64 [new symlink]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/argCheck.c [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/init.c [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/mrcImageBlurByTemperatureFactor.c [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/mrcImageBlurByTemperatureFactor.pane [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/test/Makefile [new file with mode: 0644]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/test/data [new symlink]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/usage.c [new file with mode: 0755]
src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/util.c [new file with mode: 0755]

old mode 100755 (executable)
new mode 100644 (file)
diff --git a/src/Objects/DataManip/starFile/Config/Define.inc b/src/Objects/DataManip/starFile/Config/Define.inc
new file mode 100755 (executable)
index 0000000..d11fa84
--- /dev/null
@@ -0,0 +1,3 @@
+OBJECTNAME = starFile
+EXTRA_INC =
+EXTRA_CCOPTS =
diff --git a/src/Objects/DataManip/starFile/Config/Target.inc b/src/Objects/DataManip/starFile/Config/Target.inc
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Objects/DataManip/starFile/Makefile b/src/Objects/DataManip/starFile/Makefile
new file mode 100755 (executable)
index 0000000..75b467d
--- /dev/null
@@ -0,0 +1,132 @@
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+include Config/Define.inc
+
+DIRS = src inc doc
+
+all:
+       for dir in ${DIRS} ; \
+       do \
+               $(CD) $${dir}; $(MAKE) all; $(CD) ..; \
+       done
+
+install:
+       for dir in ${DIRS}; \
+       do \
+               ${CD} $${dir} ; $(MAKE) install; $(CD) ..; \
+       done
+
+debug:
+       for dir in ${DIRS} ; \
+       do \
+               $(CD) $${dir}; $(MAKE) debug; $(CD) ..; \
+       done
+
+install-debug:
+       for dir in ${DIRS}; \
+       do \
+               ${CD} $${dir} ; $(MAKE) install-debug; $(CD) ..; \
+       done
+
+clean:
+       for dir in ${DIRS} ; \
+       do \
+               $(CD) $${dir}; $(MAKE) clean; $(CD) ..; \
+       done
+
+depend:
+       for dir in ${DIRS} ; \
+       do \
+               $(CD) $${dir}; $(MAKE) depend; $(CD) ..; \
+       done
+
+put:
+       for dir in ${DIRS} ; \
+       do \
+               $(CD) $${dir}; $(MAKE) put; $(CD) ..; \
+       done
+
+check:
+       @cd src; \
+       if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+                echo making directory; \
+                mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+        fi 
+       ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE); 
+       @$(RM) -f src/Makefile
+       @$(RM) -f inc/Makefile
+       @$(RM) -f doc/Makefile
+       @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+       @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/inc/Makefile inc/Makefile
+       @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/doc/Makefile doc/Makefile
+       @rm -f src/.Depend src/.Source
+       @touch src/$(OSTYPE)/.Depend
+       @touch src/$(OSTYPE)/.Source
+       @touch src/.CCHeader
+       @touch src/.CHeader
+       @touch src/.Wish
+       @touch src/.Ruby
+       @cd inc; make install
+       @cd src; make install-ascii
+
+#
+# CVS
+#
+cvsupdate:: 
+       cvs -d $(EOS_CVSROOT) update -d   
+
+cvscommit::
+       cvs -d $(EOS_CVSROOT) commit -R
+
+#
+# Backup
+#
+backup:
+       @cd ../../../.. ; \
+       echo $(OBJECTNAME) ; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]*;  \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.*; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*
+
+backup-all:
+       @cd ../../../.. ; \
+       echo $(OBJECTNAME) ; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]*;  \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.*; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*
+
+#
+# Distribution
+#
+distribute:
+       @cd ../../../.. ; \
+       echo $(OBJECTNAME) ; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]*;  \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.*; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]* ; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) 
+
+distribute-all:
+       @cd ../../../.. ; \
+       echo $(OBJECTNAME) ; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]*;  \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.*; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]* ; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) 
+
+include Config/Target.inc
+
diff --git a/src/Objects/DataManip/starFile/doc/.footer b/src/Objects/DataManip/starFile/doc/.footer
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Objects/DataManip/starFile/doc/.header b/src/Objects/DataManip/starFile/doc/.header
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Objects/DataManip/starFile/doc/.starFile.html b/src/Objects/DataManip/starFile/doc/.starFile.html
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Objects/DataManip/starFile/doc/Makefile b/src/Objects/DataManip/starFile/doc/Makefile
new file mode 100755 (executable)
index 0000000..11b3c90
--- /dev/null
@@ -0,0 +1,41 @@
+include ../../../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+
+SOURCEDOC  = $(OBJECTNAME).html
+DOCDSTDIR  = $(EOS_HOME)/doc/Objects
+TARGETDOC  = $(DOCDSTDIR)/$(SOURCEDOC)
+
+all: $(SOURCEDOC)
+
+install : $(TARGETDOC) 
+
+$(TARGETDOC):$(SOURCEDOC)
+       $(INSTALL) -m 444 *.html $(DOCDSTDIR)
+       @cd $(DOCDSTDIR); make
+
+$(SOURCEDOC) : .$(SOURCEDOC) .header .footer ../inc/$(OBJECTNAME).h Makefile ../src/*.c
+       @echo Creating $(OBJECTNAME).html
+       @cat .header                             > $(SOURCEDOC)
+       @#htmlUpdateTime                        >> $(SOURCEDOC)
+       @cat .$(SOURCEDOC)                      >> $(SOURCEDOC)
+       @echo \<HR\>                            >> $(SOURCEDOC)
+       @echo "<A NAME=\"Information\">" >> $(SOURCEDOC)
+       @echo "<H2>Information from source codes</H2>" >> $(SOURCEDOC)
+       @echo "</A>"               >> $(SOURCEDOC)
+       @echo "<PRE>"               >> $(SOURCEDOC)
+       -@ident ../src/*.c                      >> $(SOURCEDOC)
+       @echo "</PRE>"              >> $(SOURCEDOC)
+       @echo \<HR\>                            >> $(SOURCEDOC)
+       @echo \<A NAME=\"include\"\>>> $(SOURCEDOC)
+       @echo "<H2>$(OBJECTNAME).h</H2>">> $(SOURCEDOC)
+       @echo \</A\>                            >>$(SOURCEDOC)
+       @echo \<PRE\>                           >> $(SOURCEDOC)
+       @cat ../inc/$(OBJECTNAME).h >> $(SOURCEDOC)
+       @echo \</PRE\>                          >> $(SOURCEDOC) 
+       @cat .footer                            >> $(SOURCEDOC)
+
+clean:
+
+depend:
diff --git a/src/Objects/DataManip/starFile/inc/Makefile b/src/Objects/DataManip/starFile/inc/Makefile
new file mode 100755 (executable)
index 0000000..e1bd97e
--- /dev/null
@@ -0,0 +1,31 @@
+include ../../../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+
+INCFILE = $(OBJECTNAME).h
+
+all: 
+
+install:$(EOS_HOME)/include/$(INCFILE)
+
+$(EOS_HOME)/include/$(INCFILE):$(INCFILE)
+       if [ ! -d  $(EOS_HOME)/include ] ; then \
+               mkdir $(EOS_HOME)/include ; \
+       fi
+       $(INSTALL) -m 444 $(INCFILE) $(EOS_HOME)/include/
+
+clean:
+       $(RM) -f *.bak
+
+depend:
+       $(RM) -f *.bak  
+
+cvsupdate::
+       cvs -d $(EOS_CVSROOT) update 
+
+cvscommit::
+       @echo "cvs -d $(EOS_CVSROOT) commit"  
+
+cvsadd::
+       @echo "cvs -d $(EOS_CVSROOT) add"  
diff --git a/src/Objects/DataManip/starFile/src/.CCHeader b/src/Objects/DataManip/starFile/src/.CCHeader
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Objects/DataManip/starFile/src/.CHeader b/src/Objects/DataManip/starFile/src/.CHeader
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Objects/DataManip/starFile/src/.Ruby b/src/Objects/DataManip/starFile/src/.Ruby
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Objects/DataManip/starFile/src/.Wish b/src/Objects/DataManip/starFile/src/.Wish
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Objects/DataManip/starFile/src/Makefile b/src/Objects/DataManip/starFile/src/Makefile
new file mode 100755 (executable)
index 0000000..030c1e5
--- /dev/null
@@ -0,0 +1,345 @@
+SHELL=/bin/ksh
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+include $(OSTYPE)/.Source
+include .CHeader
+include .CCHeader
+include .Wish
+include .Ruby
+
+LIBNAME=lib$(OBJECTNAME).a
+SHAREDLIB=lib$(OBJECTNAME).so
+LIBNAMEDEBUG=lib$(OBJECTNAME).debug.a
+
+DSTDIR=../../../../../lib/$(OSTYPE)/
+SOURCE=$(OSTYPE)/.Source
+ARCHTEMPLATEDIR=$(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH
+
+all: hostdepend static-lib shared-lib ruby-lib debug
+       @echo LIBNAME:$(LIBNAME)
+       @echo OBJECTNAME:$(OBJECTNAME)
+
+hostdepend:
+       @if [ ! -L $(OSTYPE) ] ; then  \
+               moveHostdependent ; \
+       fi
+
+debug: debug-lib
+
+static-lib::
+       @echo static-lib:LIBNAME:$(LIBNAME) ; \
+       $(RM) -f $(OSTYPE)/Makefile; \
+       $(CP) $(ARCHTEMPLATEDIR)/Makefile $(OSTYPE)/Makefile ; \
+       cd $(OSTYPE); \
+       $(MAKE) $(LIBNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME) WORLDNAME=$(WORLDNAME) 
+
+shared-lib::
+       @echo shared-lib:LIBNAME:$(LIBNAME) ; \
+       $(RM) -f $(OSTYPE)/Makefile;  \
+       $(CP) $(ARCHTEMPLATEDIR)/Makefile $(OSTYPE)/Makefile ; \
+       cd  $(OSTYPE); \
+       $(MAKE) $(SHAREDLIB) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME) WORLDNAME=$(WORLDNAME) 
+
+ruby-lib::
+       @if [ -d Swig ]; then \
+               echo "--- Swig ---"; \
+               cd Swig; \
+               if [ -f extconf.rb ] ; then \
+                       swig -ruby -I/usr/include -I$(EOS_HOME)/include *.i ; \
+                       ruby extconf.rb --with-Eos-include=$(EOS_HOME)/include --with-Eos-lib=$(EOS_HOME)/lib/$(OSTYPE) --with-opt-lib=$LD_LIBRARY_PATH --with-opt-lib=$(EOS_HOME)/util/$(OSTYPE)/lib --with-GL-lib=/usr/lib ; \
+                       make ; \
+                       make sitearchdir=$(EOS_HOME)/lib/$(OSTYPE) install; \
+               fi ; \
+       fi  
+
+debug-lib::
+       @cd $(OSTYPE); \
+       $(RM) -f Makefile; \
+       $(CP) $(ARCHTEMPLATEDIR)/Makefile Makefile ; \
+       $(MAKE) $(LIBNAMEDEBUG) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME) WORLDNAME=$(WORLDNAME) 
+
+clean: 
+       rm -f *.[oa] *.debugo *.cudagdbo *.so *.sharedo *.linkinfo $(OSTYPE)/*.[ao] $(OSTYPE)/*.debugo $(OSTYPE)/*.cudagdbo $(OSTYPE)/*.linkinfo *.bak core $(OSTYPE)/*.sharedo $(OSTYPE)/*.so
+
+Makefile:
+       touch .Source
+       touch .CHeader
+       touch .CCHeader
+
+install: all install-static install-shared install-ascii 
+       @echo "Installation has completed: $(LIBNAME)" 
+
+install-static: $(DSTDIR)/$(LIBNAME)
+install-shared: $(DSTDIR)/$(SHAREDLIB)
+
+install-debug: debug $(DSTDIR)/$(LIBNAMEDEBUG) install-ascii 
+       @echo "Installation has completed: $(LIBNAMEDEBUG)" 
+
+install-ascii: h hh wish ruby 
+
+h:
+       @if [ -n "$(CHeader)" ] ; \
+       then\
+               echo "C Header Install" ; \
+               for file in $(CHeader) dummy ; \
+               do \
+                       if [ -f $${file} ] ; \
+                       then\
+                               echo $${file}; $(INSTALL) -m 444 $${file} $(EOS_HOME)/include ; \
+                       fi;\
+               done; \
+       fi
+
+hh:
+       @if [ -n "$(CCHeader)" ] ; \
+       then \
+               echo "C++ Header Install" ; \
+               for file in $(CCHeader) dummy ; \
+               do \
+                       if [ -f $${file} ] ; \
+                       then\
+                               echo $${file}; $(INSTALL) -m 444 $${file} $(EOS_HOME)/include ; \
+                       fi;\
+               done; \
+       fi
+
+wish:
+       @if [ -n "$(Wish)" ] ; \
+       then \
+               echo "Wish Install" ; \
+               for file in $(Wish) dummy ; \
+               do \
+                       if [ -f $${file} ] ; \
+                       then\
+                               echo $${file}; $(INSTALL) -m 444 $${file} $(EOS_HOME)/lib ; \
+                       fi;\
+               done; \
+       fi
+
+ruby:
+       @if [ -n "$(Ruby)" ] ; \
+       then \
+               echo "Ruby Install" ; \
+               for file in $(Ruby) dummy ; \
+               do \
+                       if [ -f $${file} ] ; \
+                       then\
+                               echo $${file}; $(INSTALL) -m 444 $${file} $(EOS_HOME)/lib ; \
+                       fi;\
+               done; \
+       fi
+
+put:
+       @Files=`ls -l | grep $${USER} | grep rw | grep -e "\.c" ` ;\
+       for file in $${Files} dummy; \
+       do \
+               if [ -w $${file} ] ; \
+               then\
+                       echo $${file}; sccsPut $${file} ; \
+               fi;\
+       done
+
+$(DSTDIR)/$(LIBNAME): static-lib
+       @echo Installing lib: $(LIBNAME)
+       @if [ ! -d $(DSTDIR) ] ; then mkdir $(DSTDIR) ; fi
+       @cd $(OSTYPE); $(INSTALL) -m 444 $(LIBNAME) ../$(DSTDIR)
+       @echo LIBNAME:$(LIBNAME)
+       @echo Link EosObjects
+       @OBJLIST=`ls $(OSTYPE)/*.o `;\
+       echo $${OBJLIST} | sed -f ../../../../Config/o2nl.sed > .tmp1 ; \
+       echo $(REALOBJ)  | sed -f ../../../../Config/o2nl.sed > .tmp2 ; \
+       echo "#### Attention Uncompiled file ####";\
+       comm -13 .tmp1 .tmp2 ; \
+       echo "########";\
+       echo $(AR) r $(DSTDIR)/libEosObjects.a $${OBJLIST} ; \
+       $(AR) r $(DSTDIR)/libEosObjects.a $${OBJLIST}; \
+       echo $(AR) s $(DSTDIR)/libEosObjects.a ; \
+       $(AR) s $(DSTDIR)/libEosObjects.a \
+       chmod 660 $(DSTDIR)/libEosObjects.a
+       @rm .tmp1 .tmp2
+
+$(DSTDIR)/$(LIBNAMEDEBUG): debug 
+       @echo Installing lib: $(LIBNAMEDEBUG)
+       @if [ ! -d $(DSTDIR) ] ; then mkdir $(DSTDIR) ; fi
+       @cd $(OSTYPE); $(INSTALL) -m 444 $(LIBNAMEDEBUG) ../$(DSTDIR)
+       @echo LIBNAME:$(LIBNAMEDEBUG)
+       @echo Link EosObjects
+       @OBJLISTDEBUG=`ls $(OSTYPE)/*.debugo `;\
+       echo $${OBJLISTDEBUG} | sed -f ../../../../Config/o2nl.sed > .tmp1 ; \
+       echo $(REALOBJDEBUG)  | sed -f ../../../../Config/o2nl.sed > .tmp2 ; \
+       echo "#### Attention Uncompiled file ####";\
+       comm -13 .tmp1 .tmp2 ; \
+       echo "########";\
+       echo $(AR) r $(DSTDIR)/libEosObjects.debug.a $${OBJLISTDEBUG} ; \
+       $(AR) r $(DSTDIR)/libEosObjects.debug.a $${OBJLISTDEBUG}; 
+       echo $(AR) s $(DSTDIR)/libEosObjects.debug.a ; \
+       $(AR) s $(DSTDIR)/libEosObjects.debug.a 
+       chmod 660 $(DSTDIR)/libEosObjects.debug.a
+       @rm .tmp1 .tmp2
+
+$(DSTDIR)/$(SHAREDLIB): shared-lib
+       @echo Installing lib: $(SHAREDLIB)
+       @if [ ! -d $(DSTDIR) ] ; then mkdir $(DSTDIR) ; fi
+       @cd $(OSTYPE); $(INSTALL) -m 444 $(SHAREDLIB) ../$(DSTDIR)
+       @echo LIBNAME:$(SHAREDLIB)
+       @echo Link EosObjects
+       @OBJLIST=`ls $(OSTYPE)/*.sharedo `;\
+       echo $${OBJLIST} | sed -f ../../../../Config/o2nl.sed > .tmp1 ; \
+       echo $(REALSHAREDOBJ)  | sed -f ../../../../Config/o2nl.sed > .tmp2 ; \
+       echo "#### Attention Uncompiled file ####";\
+       comm -13 .tmp1 .tmp2 ; \
+       echo "########"; \
+       if [ ! -d  $(DSTDIR)/shared ] ; then \
+               mkdir $(DSTDIR)/shared; \
+       fi; \
+       $(CP) $${OBJLIST} $(DSTDIR)/shared ; \
+       echo "$(CP) $${OBJLIST} $(DSTDIR)/shared" ; \
+       $(SHARED) $(DSTDIR)/libEosObjects.so $(DSTDIR)/shared/*.sharedo ; \
+       echo "$(SHARED) $(DSTDIR)/libEosObjects.so $(DSTDIR)/shared/*.sharedo" ; \
+       chmod 660 $(DSTDIR)/libEosObjects.so
+       @rm .tmp1 .tmp2
+
+install-all: 
+       @cd ..  ; $(MAKE) install
+
+install-ruby: ruby-lib
+       cd $(OSTYPE); $(RUBY) -r ftools -e 'File::install(ARGV[0], ARGV[1], 0555, true)' $(SHAREDLIB) $(RUBYSHAREDLIB)/$(SHAREDLIB)     
+
+depend:
+       @echo dependency checking now 
+       @echo $(OSTYPE)
+       @echo SRC = \\ > $(SOURCE) 
+       @ls -1 *.c  | sed -e "s/\.c/.c \\\\/"   >> $(SOURCE)
+       @ls -1 *.cc | sed -e "s/\.cc/.cc \\\\/" >> $(SOURCE)
+       @ls -1 *.ccm | sed -e "s/\.ccm/.ccm \\\\/" >> $(SOURCE)
+       @ls -1 *.idl | sed -e "s/\.idl/.idl \\\\/" >> $(SOURCE)
+       @ls -1 *.cu | sed -e "s/\.cu/.cu \\\\/" >> $(SOURCE)
+       @echo >> $(SOURCE)
+       @#
+       @echo OBJ = \\ >> $(SOURCE)
+       @ls -1 *.c   | sed -e "s/\.c/.o \\\\/"    >> $(SOURCE)
+       @ls -1 *.cc  | sed -e "s/\.cc/.o  \\\\/"  >> $(SOURCE)
+       @ls -1 *.ccm  | sed -e "s/\.ccm/.o  \\\\/"  >> $(SOURCE)
+       @ls -1 *.idl | sed -e "s/\.idl/.o  \\\\/" >> $(SOURCE)
+       @ls -1 *.cu  | sed -e "s/\.cu/.o  \\\\/"  >> $(SOURCE)
+       @echo >> $(SOURCE)
+       @#
+       @echo SHAREDOBJ = \\ >> $(SOURCE)
+       @ls -1 *.c   | sed -e "s/\.c/.sharedo \\\\/"    >> $(SOURCE)
+       @ls -1 *.cc  | sed -e "s/\.cc/.sharedo  \\\\/"  >> $(SOURCE)
+       @ls -1 *.ccm  | sed -e "s/\.ccm/.sharedo  \\\\/"  >> $(SOURCE)
+       @ls -1 *.idl | sed -e "s/\.idl/.sharedo  \\\\/" >> $(SOURCE)
+       @ls -1 *.cu  | sed -e "s/\.cu/.sharedo  \\\\/"  >> $(SOURCE)
+       @echo >> $(SOURCE)
+       @#
+       @echo REALOBJ = \\ >> $(SOURCE)
+       @ls -1 *.c   | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.c/.o \\\\/"  >> $(SOURCE)
+       @ls -1 *.cc  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cc/.o \\\\/" >> $(SOURCE)
+       @ls -1 *.ccm  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.ccm/.o \\\\/" >> $(SOURCE)
+       @ls -1 *.idl | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.idl/.o \\\\/" >> $(SOURCE)
+       @ls -1 *.cu  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cu/.o \\\\/" >> $(SOURCE)
+       @echo >> $(SOURCE) 
+       @echo REALSHAREDOBJ = \\ >> $(SOURCE)
+       @ls -1 *.c   | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.c/.sharedo \\\\/"  >> $(SOURCE)
+       @ls -1 *.cc  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cc/.sharedo \\\\/" >> $(SOURCE)
+       @ls -1 *.ccm  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.ccm/.sharedo \\\\/" >> $(SOURCE)
+       @ls -1 *.idl | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.idl/.sharedo \\\\/" >> $(SOURCE)
+       @ls -1 *.cu  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cu/.sharedo \\\\/" >> $(SOURCE)
+       @echo >> $(SOURCE) 
+       @echo OBJDEBUG = \\ >> $(SOURCE)
+       @ls -1 *.c   | sed -e "s/\.c/.debugo \\\\/"    >> $(SOURCE)
+       @ls -1 *.cc  | sed -e "s/\.cc/.debugo  \\\\/"  >> $(SOURCE)
+       @ls -1 *.ccm  | sed -e "s/\.ccm/.debugo  \\\\/"  >> $(SOURCE)
+       @ls -1 *.idl | sed -e "s/\.idl/.debugo  \\\\/" >> $(SOURCE)
+       @echo >> $(SOURCE)
+       @#
+       @echo REALOBJDEBUG = \\ >> $(SOURCE)
+       @ls -1 *.c   | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.c/.debugo \\\\/"  >> $(SOURCE)
+       @ls -1 *.cc  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cc/.debugo \\\\/" >> $(SOURCE)
+       @ls -1 *.ccm  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.ccm/.debugo \\\\/" >> $(SOURCE)
+       @ls -1 *.idl | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.idl/.debugo \\\\/" >> $(SOURCE)
+       @ls -1 *.cu  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cu/.debugo \\\\/" >> $(SOURCE)
+       @echo >> $(SOURCE) 
+       @echo OBJCUDAGDB = \\ >> $(SOURCE)
+       @ls -1 *.c   | sed -e "s/\.c/.cudagdb.o \\\\/"    >> $(SOURCE)
+       @ls -1 *.cc  | sed -e "s/\.cc/.cudagdb.o  \\\\/"  >> $(SOURCE)
+       @ls -1 *.cu  | sed -e "s/\.cu/.cudagdb.o  \\\\/"  >> $(SOURCE)
+       @echo >> $(SOURCE)
+       @#
+       @echo REALOBJCUDAGDB = \\ >> $(SOURCE)
+       @ls -1 *.c   | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.c/.cudagdb.o \\\\/"  >> $(SOURCE)
+       @ls -1 *.cc  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cc/.cudagdb.o \\\\/" >> $(SOURCE)
+       @ls -1 *.cu  | sed -e "s/^/\$(OSTYPE)\//" -e "s/\.cu/.cudagdb.o \\\\/" >> $(SOURCE)
+       @echo >> $(SOURCE) 
+       @#
+       @echo >> $(SOURCE)
+       @echo CCHeader = \\ > .CCHeader
+       @ls -1 *.hh | sed -e "s/\.hh/.hh \\\\/" >> .CCHeader
+       @echo >> .CCHeader
+       @#
+       @echo CHeader = \\ > .CHeader
+       @ls -1 *.h | sed -e "s/\.h/.h \\\\/" >> .CHeader
+       @echo >> .CHeader
+       @#
+       @echo Wish = \\ > .Wish
+       @ls -1 *.wish | sed -e "s/\.wish/.wish \\\\/" >> .Wish
+       @echo >> .Wish
+       @#
+       @echo Ruby = \\ > .Ruby
+       @ls -1 *.rb | sed -e "s/\.rb/.rb \\\\/" >> .Ruby
+       @echo >> .Ruby
+       @#
+       @ls -1 *.c *.cc *.ccm | \
+       awk -vHostType=$(OSTYPE) -f$(EOS_HOME)/sbin/awk/objectdependency.awk > $(OSTYPE)/.Depend
+       @#
+       @$(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(KHOROS_INCS) *.c *.cc *.ccm >> $(OSTYPE)/.Depend
+       @for file in $(SRC) dummy ; \
+       do  \
+               if [ -f $${file} ] ; \
+               then \
+                       echo $${file} ; \
+                       ln -sf ../$${file} $(OSTYPE)/$${file}; \
+               fi ;\
+       done
+
+#
+#
+#
+test::
+       @if [ -d test ] ; then \
+               cd test; \
+               $(MAKE); \
+       else \
+               echo "No test directory: making test"; \
+               mkdir test; \
+               cd test; \
+               touch Makefile; \
+       fi
+
+#
+# cvs
+#
+cvsupdate::
+       cvs -d $(EOS_CVSROOT) update -d 
+
+cvslogin::
+       cvs -d $(EOS_CVSROOT) login 
+
+cvscommit::
+       @echo "cvs -d $(EOS_CVSROOT) commit -m @"message@" filename"
+
+cvsadd::
+       @echo "cvs -d $(EOS_CVSROOT) add  filename|dirname"
+       @echo "Need Commit for filename"
+       @echo "make cvscommit"
+
+cvsremove::
+       @echo "cvs -d $(EOS_CVSROOT) remove filename"
+       @echo "Need Commit for filename"
+       @echo "make cvscommit" 
+
+include $(OSTYPE)/.Depend
+include ../Config/Target.inc
diff --git a/src/Objects/DataManip/starFile/src/X86MAC64 b/src/Objects/DataManip/starFile/src/X86MAC64
new file mode 120000 (symlink)
index 0000000..f344d0f
--- /dev/null
@@ -0,0 +1 @@
+../../../../../hostdepend/X86MAC64/src/Objects/DataManip/starFile/src/X86MAC64
\ No newline at end of file
old mode 100755 (executable)
new mode 100644 (file)
index 9367728..98539e3 100644 (file)
@@ -10,3 +10,4 @@ WORLDNAME=Tools
 WORLDNAME=Tools
 WORLDNAME=Tools
 WORLDNAME=Tools
+WORLDNAME=Tools
index 28fe33a..ba90d9c 100644 (file)
@@ -62,6 +62,7 @@ mrcImageBandPassFilter \
 mrcImageBilateralFilter \
 mrcImageBinalization \
 mrcImageBlockMerge \
+mrcImageBlurByTemperatureFactor \
 mrcImageBottomHatTransform \
 mrcImageBoundaryInfo \
 mrcImageCCDNoiseRemove \
index 74228f7..28fe33a 100644 (file)
@@ -254,6 +254,7 @@ mrcImageStandardDeviation \
 mrcImageStreamLine \
 mrcImageSubtraction \
 mrcImageSuperResolution \
+mrcImageSuperResolutionByOpticalFlow \
 mrcImageSurfaceAreaCalc \
 mrcImageSurfaceCalc \
 mrcImageSymmetryAverage \
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/Define.inc b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/Define.inc
new file mode 100755 (executable)
index 0000000..d099fac
--- /dev/null
@@ -0,0 +1,4 @@
+OBJECTNAME = mrcImageBlurByTemperatureFactor
+EXTRA_LIB  =
+EXTRA_CCOPTS =
+EXTRA_INC =
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/OptionControlFile b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/OptionControlFile
new file mode 100755 (executable)
index 0000000..465fc1c
--- /dev/null
@@ -0,0 +1,6 @@
+# OptionControlFile
+# FileFormat
+"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile","NULL"
+"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile","NULL"
+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/Target.inc b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Config/Target.inc
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Makefile b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/Makefile
new file mode 100755 (executable)
index 0000000..3d1cbd9
--- /dev/null
@@ -0,0 +1,115 @@
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+include Config/Define.inc
+
+all:
+       cd src; make all; cd ..
+
+install:
+       cd src; make install; cd ..
+
+
+putSF:
+       if [ -f private ] ; \
+       then \
+               echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
+       else \
+               cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
+       fi
+
+put:
+       cd src; make put; cd ..
+
+clean:
+       cd src; make clean; cd ..
+
+depend:
+       cd src; make depend; cd ..
+
+check:
+       @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+               echo making directory; \
+               mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+       fi
+       ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE); 
+       @$(RM) src/Makefile
+       @echo "New src/Makefile" 
+       @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+       @cd src; rm -f $(OSTYPE)/.Depend; touch $(OSTYPE)/.Depend; make depend
+
+update:
+       @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+               echo making directory; \
+               mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+       fi
+       ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE); 
+       @$(RM) src/Makefile
+       @echo "New src/Makefile" 
+       @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+       @cd src; rm -f $(OSTYPE)/.Depend; touch $(OSTYPE)/.Depend; echo "Y" | make update      
+
+cvsupdate::
+       cvs -d $(EOS_CVSROOT) update -d 
+
+cvscommit::
+       cvs -d $(EOS_CVSROOT) commit
+
+backup:
+       @cd ../../../..;     \
+       echo $(OBJECTNAME) ; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config       ; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+backup-all:
+       @cd ../../../..;     \
+       echo $(OBJECTNAME) ; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config       ; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+       
+distribute:
+       cd ../../../..;     \
+       echo $(OBJECTNAME) ; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config     ; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+       
+distribute-all:
+       @cd ../../../..;     \
+       echo $(OBJECTNAME) ; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config     ; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+eosintroduce:
+       ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./ 
+
+include Config/Target.inc
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/doc/Makefile b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/doc/Makefile
new file mode 100755 (executable)
index 0000000..8215199
--- /dev/null
@@ -0,0 +1,2 @@
+install:
+       cd ../src; make install-doc; cd ../doc  
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/inc/config.h b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/inc/config.h
new file mode 100755 (executable)
index 0000000..a31e97c
--- /dev/null
@@ -0,0 +1,6 @@
+#ifndef CONFIG_H
+#define CONFIG_H
+
+#include "../inc/mrcImageBlurByTemperatureFactor.h"
+
+#endif /* CONFIG_H */
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/inc/mrcImageBlurByTemperatureFactor.h b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/inc/mrcImageBlurByTemperatureFactor.h
new file mode 100755 (executable)
index 0000000..60ee585
--- /dev/null
@@ -0,0 +1,46 @@
+#ifndef MRCIMAGEBLURBYTEMPERATUREFACTOR_H
+#define MRCIMAGEBLURBYTEMPERATUREFACTOR_H
+#include <stdio.h>
+#include <stdlib.h>
+
+#define OPTION_FLAG     '-'
+#define OPTION_FLAG_POS (0)
+#define OPTION_POS      (1)
+
+
+
+
+typedef struct mrcImageBlurByTemperatureFactorInfo {
+    long flagRedirect;
+
+    long flagIn;
+    char* In;
+    FILE* fptIn;
+    
+    long flagOut;
+    char* Out;
+    FILE* fptOut;
+    
+    long flagconfigFile;
+    char* configFile;
+    FILE* fptconfigFile;
+    
+    long flagmode;
+    long mode;
+    
+} mrcImageBlurByTemperatureFactorInfo;
+#ifdef __cplusplus
+extern "C" {
+#endif
+extern void argCheck(mrcImageBlurByTemperatureFactorInfo* info, int argc, char* avgv[]);
+extern void khorosInit(int argc, char* avgv[]);
+extern void init0(mrcImageBlurByTemperatureFactorInfo* info);
+extern void init1(mrcImageBlurByTemperatureFactorInfo* info);
+extern void usage(char* usage);
+extern void additionalUsage(void);
+extern void htmlBeforeUsage(char* usage);
+extern void htmlAfterUsage(char* usage);
+#ifdef __cplusplus
+};
+#endif
+#endif /* MRCIMAGEBLURBYTEMPERATUREFACTOR_H */
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/.Depend b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/.Depend
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/.Source b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/.Source
new file mode 100755 (executable)
index 0000000..e69de29
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/Makefile b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/Makefile
new file mode 100755 (executable)
index 0000000..a360703
--- /dev/null
@@ -0,0 +1,430 @@
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+EOSHOME=../../../../../
+DSTDIR=$(EOSHOME)/bin
+DSTDOC=$(EOSHOME)/doc
+DSTTAR=$(EOSHOME)/tar
+
+INCFILES   = 
+
+LIBFILES   = \
+                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
+
+LIBFILESDEBUG   = \
+                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
+
+SRCC  = \
+                       $(OBJECTNAME).c \
+                       init.c \
+                       argCheck.c \
+                       usage.c  \
+                       util.c \
+
+SRCCXX  = \
+                       $(OBJECTNAME).cc \
+                       init.cc \
+                       argCheck.cc \
+                       usage.cc  \
+                       util.cc \
+
+MODULES    = \
+                       $(OBJECTNAME).o \
+                       init.o \
+                       argCheck.o \
+                       usage.o  \
+                       util.o \
+
+REALMODULES    = \
+                       $(OSTYPE)/$(OBJECTNAME).o \
+                       $(OSTYPE)/init.o \
+                       $(OSTYPE)/argCheck.o \
+                       $(OSTYPE)/usage.o \
+                       $(OSTYPE)/util.o 
+
+MODULESDEBUG    = \
+                       $(OBJECTNAME).debugo \
+                       init.debugo \
+                       argCheck.debugo \
+                       usage.debugo  \
+                       util.debugo \
+
+REALMODULESDEBUG    = \
+                       $(OSTYPE)/$(OBJECTNAME).debugo \
+                       $(OSTYPE)/init.debugo \
+                       $(OSTYPE)/argCheck.debugo \
+                       $(OSTYPE)/usage.debugo \
+                       $(OSTYPE)/util.debugo 
+
+
+all: $(OSTYPE)/$(OBJECTNAME) 
+       if [ ! -L $(OSTYPE) ] ; then \
+               moveHostdependent; \
+       fi
+
+debug: $(OSTYPE)/$(OBJECTNAME).debug
+
+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
+
+
+$(OSTYPE)/$(OBJECTNAME)::
+       @$(RM) -f $(OSTYPE)/Makefile ; \
+       $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+       cd $(OSTYPE); \
+       $(MAKE) $(OBJECTNAME)  WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).debug::
+       @$(RM) -f $(OSTYPE)/Makefile ; \
+       $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+       cd $(OSTYPE); \
+       $(MAKE) $(OBJECTNAME).debug  WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).cudagdb::
+       @$(RM) -f $(OSTYPE)/Makefile ; \
+       $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+       cd $(OSTYPE); \
+       $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+cvsupdate::
+       cvs -d $(EOS_CVSROOT) update -d 
+
+cvscommit::
+       cvs -d $(EOS_CVSROOT) commit 
+
+edit:
+       @if [ -r $(OBJECTNAME).c ]; \
+       then \
+               sccsEdit $(OBJECTNAME).c; \
+       else \
+               echo "Source files are already editable"; \
+       fi
+       @if [ -r wish/$(OBJECTNAME).wish ]; \
+       then \
+               cd wish; sccsEdit $(OBJECTNAME).wish; \
+       else \
+               echo "Source files (wish) are already editable."; \
+       fi
+       @if [ -r ruby/$(OBJECTNAME).rb ]; \
+       then \
+               cd ruby; sccsEdit $(OBJECTNAME).rb; \
+       else \
+               echo "Source files (ruby) are already editable."; \
+       fi
+       @if [ -r perl/$(OBJECTNAME).pl ]; \
+       then \
+               cd perl; sccsEdit $(OBJECTNAME).pl ; \
+       else \
+               echo "Source files (perl) are already editable."; \
+       fi
+       @if [ -r ../Config/OptionControlFile ]; \
+       then \
+               cd ../Config; sccsEdit OptionControlFile; \
+       else \
+               echo "OptionControlFile are already editable."; \
+       fi
+       
+unedit:
+       @if [ -w $(OBJECTNAME).c ]; \
+       then \
+               sccsUnedit $(OBJECTNAME).c; \
+       else \
+               echo "Source files are not editable"; \
+       fi
+       @if [ -w wish/$(OBJECTNAME).wish ]; \
+       then \
+               cd wish; sccsUnedit $(OBJECTNAME).wish; \
+       else \
+               echo "Source files (wish) are not editable."; \
+       fi
+       @if [ -w ruby/$(OBJECTNAME).rb]; \
+       then \
+               cd ruby; sccsUnedit $(OBJECTNAME).rb; \
+       else \
+               echo "Source files (ruby) are not editable."; \
+       fi
+       @if [ -w perl/$(OBJECTNAME).pl ]; \
+       then \
+               cd perl; sccsUnedit $(OBJECTNAME).pl ; \
+       else \
+               echo "Source files (ruby) are not editable."; \
+       fi
+       @if [ -w ../Config/OptionControlFile ]; \
+       then \
+               cd ../Config; sccsUnedit OptionControlFile; \
+       else \
+               echo "OptionControlFile are not editable."; \
+       fi
+       
+report:
+       @if [ -r $(OBJECTNAME).c ]; \
+       then \
+               sccsReport $(OBJECTNAME).c; \
+       else \
+               echo "Source files are already editable"; \
+       fi
+       @if [ -r wish/$(OBJECTNAME).wish ]; \
+       then \
+               cd wish; sccsReport $(OBJECTNAME).wish; \
+       else \
+               echo "Source files (wish) are already editable."; \
+       fi
+       @if [ -r ruby/$(OBJECTNAME).rb ]; \
+       then \
+               cd ruby; sccsReport $(OBJECTNAME).rb; \
+       else \
+               echo "Source files (ruby) are already editable."; \
+       fi
+       @if [ -r perl/$(OBJECTNAME).pl ] ; \
+       then \
+               cd perl; sccsReport $(OBJECTNAME).pl ; \
+       else \
+               echo "Source files (perl) are already editable."; \
+       fi
+       @if [ -r ../Config/OptionControlFile ]; \
+       then \
+               cd ../Config; sccsReport OptionControlFile; \
+       else \
+               echo "OptionControlFile are already editable."; \
+       fi
+
+clean : 
+       rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
+               $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
+               $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
+               $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
+               $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
+               *.bak *.$(OSTYPE) core
+
+install: install-bin install-doc install-wish install-ruby install-shell install-perl
+       @if [ dummy$(KHOROS_KENGOBJ) != dummy ]  ; \
+       then \
+               if [ -x $(KHOROS_KGENOBJ) ] ;  \
+               then \
+                       make install-khoros ; \
+               fi; \
+       fi 
+
+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME) 
+
+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME) 
+       @echo ---- Installing to bin
+       @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+       @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
+       then \
+               mkdir $(DSTDIR)/$(OSTYPE); \
+       fi
+       @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
+       then \
+               echo "Compilation is complete"; \
+               $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+               $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
+               $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+       else \
+               echo "Compilation is incomplete. $(OBJECTNAME)"; \
+       fi
+       @echo ---- end of bin
+
+install-wish:
+       @if [ -d wish ]; \
+       then \
+               echo "---- Tcl/Tk file Install"; \
+               if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
+               then \
+                       mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
+               fi ; \
+               $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
+               $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/*  ;\
+               touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+               $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+               echo "---- Tcl/Tk file Installed";\
+       fi
+
+install-ruby:
+       @if [ -d ruby ]; \
+       then \
+               echo "---- Ruby/Tk file Install"; \
+               if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
+               then \
+                       mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
+               fi ; \
+               $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
+               $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
+               echo "---- Ruby/Tk file Installed"; \
+       fi
+
+install-perl:
+       @if [ -d perl ]; \
+       then \
+               echo "---- Perl/Tk file Install"; \
+               if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
+               then \
+                       mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
+               fi; \
+               $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
+               $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
+               echo "---- Perl/Tk file Installed"; \
+       fi
+
+install-shell:
+       @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+       then \
+               mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+       fi
+       @if [ -d shell ]; \
+       then \
+               echo "---- Shell file Install"; \
+               if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+               then \
+                       mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+               fi ; \
+               $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
+               $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
+               echo "---- Shell file Installed"; \
+       fi
+
+install-khoros:
+       @echo Installing to khoros
+       @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
+       then \
+               echo kgenobj;\
+               $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form  -lang ksh ; \
+       fi
+       @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+       then \
+               $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
+       fi
+       @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+       then \
+               $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
+               if [ $?  ] ; \
+               then \
+                       echo "-- setting khoros ---" ; \
+                       if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
+                       then \
+                               $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
+                               $(RM) -f $(OBJECTNAME).pane ; \
+                               $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
+                               $(CD) ../../ ; \
+                               $(CHMOD) -R 555 $(OBJECTNAME); \
+                       else \
+                               echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
+                       fi ; \
+               else \
+                       echo "Failed !!: Cannot chage mode in installing  $(OBJECTNAME) to khoros system"; \
+               fi ; \
+               echo "-- end of khoros-installing"; \
+       fi
+
+install-doc: html 
+       @if [ ! -d $(DSTDOC)/SmallTools ]; \
+       then \
+               mkdir $(DSTDOC)/SmallTools ;\
+       fi
+       @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
+       then \
+               $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
+       fi
+       @$(CP) $(OBJECTNAME).html  $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+       @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+       @if [ -f ../doc/*.html ]; \
+       then \
+               $(CP) ../doc/*.html  $(DSTDOC)/SmallTools/ ;\
+       fi
+       @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+       @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
+       then \
+               cd $(DSTDOC)/SmallTools; $(MAKE); \
+       fi
+
+html: $(OBJECTNAME).html
+
+configFileRead:
+       @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
+
+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
+       @echo creating html
+       @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
+       @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
+       @$(RM) $(OBJECTNAME).html.tmp
+
+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
+       @ln -s -f ../sbin/MachineIndependent $@
+
+depend::
+       @echo dependency checking now
+       @if [ ! -L $(OSTYPE) ] ; then \
+               moveHostdependent; \
+       fi
+       rm -f $(OSTYPE)/.Depend 
+       #echo C
+       @if [ -f $(OBJECTNAME).c ] ; \
+       then \
+               echo "dependency: *.c"; \
+               echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c   ; \
+                    $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c                  >> $(OSTYPE)/.Depend ; \
+       fi
+       #echo CC
+       @if [ -f $(OBJECTNAME).cc ] ; \
+       then \
+               echo "dependency: *.cc"; \
+               echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
+                    $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
+       fi
+       @if [ -f $(OBJECTNAME).ccm ] ; \
+       then \
+               echo "dependency: *.ccm"; \
+               echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
+                    $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
+       fi
+       @if [ -f $(OBJECTNAME).cu ] ; \
+       then \
+               echo "dependency: *.cu"; \
+               echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
+                    $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
+       fi
+
+update:../Config/OptionControlFile
+       maketool $(CLASSNAME) $(OBJECTNAME) update
+
+updateNoAns:../Config/OptionControlFile
+       maketool $(CLASSNAME) $(OBJECTNAME) update N
+
+changeName::
+
+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
+       @if [ -f test/Makefile ] ; \
+       then \
+               cd test; make ; \
+       else \
+               echo "No test Makefile"; \
+       fi
+
+TestDir::
+       @if [ ! -d test ] ; \
+       then \
+               echo "Creating test dir"; \
+               mkdir  test; \
+       fi
+       @if [ ! -f test/Makefile ] ; \
+       then \
+               echo "Creating Makefile"; \
+               cd test; \
+               protoTestMakefileCreate; \
+       fi
+       @if [ ! -d test/data ]; \
+       then \
+               mkdir $(EOSHOME)/data/$(OBJECTNAME); \
+               cd test; \
+               ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
+       fi 
+
+tar::
+       cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
+                                                            ../bin/*/$(OBJECTNAME).* \
+                                                            ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
+                               ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
+
+-include $(OSTYPE)/.Depend
+-include ../Config/Target.inc
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/X86MAC64 b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/X86MAC64
new file mode 120000 (symlink)
index 0000000..272c791
--- /dev/null
@@ -0,0 +1 @@
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/X86MAC64
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/argCheck.c b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/argCheck.c
new file mode 100755 (executable)
index 0000000..4f1f7a4
--- /dev/null
@@ -0,0 +1,96 @@
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "eosString.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+argCheck(mrcImageBlurByTemperatureFactorInfo* info, int argc, char* argv[])
+{
+    long i;
+    char s[1024];
+    FILE* fpt;
+    
+    if(NULL==(fpt=fopen(".EosLog", "a+"))) { 
+        
+    } else {
+        for(i=0; i<argc; i++) {
+            fprintf(fpt, "%s ", argv[i]);
+        }
+        fprintf(fpt, "\n");
+        fclose(fpt);
+    }
+    for(i=1; i<argc; i++) {
+        if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
+            SSWITCH(argv[i]+OPTION_POS)
+                SCASE("i") {
+                    if(i+1<argc) {
+                        info->In = stringGetNthWord(argv[i+1], 1, " ,");
+                        i++;
+                        info->flagIn++;
+                    } else {
+                        usage(argv[0]);
+                        exit(EXIT_FAILURE);
+                    }
+                    SBREAK;
+                }
+                SCASE("o") {
+                    if(i+1<argc) {
+                        info->Out = stringGetNthWord(argv[i+1], 1, " ,");
+                        i++;
+                        info->flagOut++;
+                    } else {
+                        usage(argv[0]);
+                        exit(EXIT_FAILURE);
+                    }
+                    SBREAK;
+                }
+                SCASE("c") {
+                    if(i+1<argc) {
+                        info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
+                        i++;
+                        info->flagconfigFile++;
+                    } else {
+                        usage(argv[0]);
+                        exit(EXIT_FAILURE);
+                    }
+                    SBREAK;
+                }
+                SCASE("m") {
+                    if(i+1<argc) {
+                        info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
+                        i++;
+                        info->flagmode++;
+                    } else {
+                        usage(argv[0]);
+                        exit(EXIT_FAILURE);
+                    }
+                    SBREAK;
+                }
+                SCASE("h") {
+                    usage(argv[0]);
+                    exit(EXIT_SUCCESS);
+                    break;
+                }
+                SCASE("html") {
+                    htmlBeforeUsage(argv[0]);
+                    usage(argv[0]);
+                    htmlAfterUsage(argv[0]);
+                    exit(EXIT_SUCCESS);
+                    break;
+                }
+                SDEFAULT {
+                    fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
+                    usage(argv[0]);
+                    exit(EXIT_FAILURE);
+                    break;
+                }
+            SSWITCHEND;
+        } 
+    } 
+} 
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/init.c b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/init.c
new file mode 100755 (executable)
index 0000000..f3b2e66
--- /dev/null
@@ -0,0 +1,91 @@
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "eosString.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+init0(mrcImageBlurByTemperatureFactorInfo* info)
+{
+    info->fptIn = NULL;    info->flagIn = 0;
+    info->fptOut = NULL;    info->flagOut = 0;
+    info->fptconfigFile = NULL;    info->flagconfigFile = 0;
+    info->mode = 0;    info->flagmode = 0;
+}
+
+void
+init1(mrcImageBlurByTemperatureFactorInfo* info)
+{
+    char s[1024];
+    int i;
+    if(!info->flagIn) {
+        stringGetFromFile(s, "In", stdin, stdout, 0);
+        info->In = stringGetNthWord(s, 1, " ,\t");
+        info->flagIn++;
+    }
+    if(info->flagIn) {
+        info->fptIn = fileOpen(info->In, "r");
+    }
+    
+    if(!info->flagOut) {
+        stringGetFromFile(s, "Out", stdin, stdout, 0);
+        info->Out = stringGetNthWord(s, 1, " ,\t");
+        info->flagOut++;
+    }
+    if(info->flagOut) {
+        info->fptOut = fileOpen(info->Out, "w");
+    }
+    
+    if(info->flagconfigFile) {
+        info->fptconfigFile = fileOpen(info->configFile, "r");
+    }
+    
+    if(info->flagmode) {
+    }
+    
+}
+#ifdef KHOROS
+#include <stdio.h>
+#include "bootstrap.h"
+#include "dataserv.h"
+#include "datamanip.h"
+extern void func_usage_additions(void);
+extern void func_free_args(kexit_status status, kaddr client_data);
+extern void func_get_args(kform* pane);
+
+void
+func_usage_additions(void)
+{
+}
+void
+func_free_args(kexit_status status, kaddr client_data)
+{
+}
+void
+func_get_args(kform* pane)
+{
+}
+void
+khorosInit(int argc, char* argv[])
+{
+    char* eospath;
+    char  panepath[1024];
+    FILE* fpt;
+    
+    eospath = getenv("EOS_HOME");
+    sprintf(panepath, "%s/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/mrcImageBlurByTemperatureFactor.pane", eospath);
+    khoros_initialize(argc, argv, "EOS");
+    fpt = fopen(panepath, "r");    if(NULL!=fpt) {
+        fclose(fpt);
+        kclui_initialize(panepath, KGEN_NONE, "EOS", "mrcImageBlurByTemperatureFactor",
+                     func_usage_additions,
+                     func_get_args,
+                     func_free_args);
+    }
+}
+#endif /* KHOROS */ 
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/mrcImageBlurByTemperatureFactor.c b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/mrcImageBlurByTemperatureFactor.c
new file mode 100755 (executable)
index 0000000..46e7782
--- /dev/null
@@ -0,0 +1,53 @@
+/*
+# mrcImageBlurByTemperatureFactor : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : mrcImageBlurByTemperatureFactor
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>                  
+#define GLOBAL_DECLARATION
+#include "../inc/config.h"
+
+#define DEBUG
+#include "genUtil.h"
+#include "mrcImage.h"
+
+/*
+Example:
+typedef struct lmrcImageBlurByTemperatureFactorInfo {
+       float a;
+       int   b;
+} lmrcImageBlurByTemperatureFactorInfo;
+
+typedef enum lmrcImageBlurByTemperatureFactorMode {
+       a=0,
+       b=1
+} lmrcImageBlurByTemperatureFactorMode;
+*/
+
+int
+main(int argc, char* argv[]) 
+{
+       mrcImageBlurByTemperatureFactorInfo info;
+
+       init0(&info);
+    argCheck(&info, argc, argv);
+    init1(&info);
+
+       DEBUGPRINT("Program Start\n");
+
+       exit(EXIT_SUCCESS);
+}
+
+void
+additionalUsage()
+{
+       fprintf(stderr, "----- Additional Usage -----\n");
+}
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/mrcImageBlurByTemperatureFactor.pane b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/mrcImageBlurByTemperatureFactor.pane
new file mode 100755 (executable)
index 0000000..b22e4b3
--- /dev/null
@@ -0,0 +1,16 @@
+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
+  -M 1 1 52x1+0+0 +1+0 ' ' subform
+    -P 1 0 52x1+0+1 +0+0 ' ' mrcImageBlurByTemperatureFactor
+      -D 1 0 9x1+0+0 'Options' _gui_options
+        -H 1  6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
+        -E
+        -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImageBlurByTemperatureFactor
+        -H 1  5x1+41+0 'Help' 'help page' $EOS/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/doc/mrcImageBlurByTemperatureFactor.doc help
+        -Q 1 0 5.25x1+47+0 'Close'
+        -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'InputDataFile' i
+        -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'OutputDataFile' o
+        -I 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'configFile' 'ConfigurationFile' c
+        -i 1 0 1 0 0 -1x1+1+6.000000 0 0 0 0 0 'mode' 'Mode' m
+    -E
+  -E
+-E
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/test/Makefile b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/test/Makefile
new file mode 100644 (file)
index 0000000..323c2db
--- /dev/null
@@ -0,0 +1,17 @@
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+include ../../../../../Config/Define.inc
+
+all: help exec
+
+help:
+       @echo "----- Help Message Check -----"
+       @../$(OSTYPE)/$(OBJECTNAME)      -h
+
+exec:
+       @echo "----- Execution Check -----"
+       ../$(OSTYPE)/$(OBJECTNAME) 
+       @echo "----- Calc check -----"          
+
+clean:
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/test/data b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/test/data
new file mode 120000 (symlink)
index 0000000..8c21334
--- /dev/null
@@ -0,0 +1 @@
+../../../../../..//data/mrcImageBlurByTemperatureFactor
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/usage.c b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/usage.c
new file mode 100755 (executable)
index 0000000..c3e4fc6
--- /dev/null
@@ -0,0 +1,36 @@
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
+void
+usage(char* thisProgram)
+{
+    fprintf(stderr, "Usage: %s\n", thisProgram);
+    fprintf(stderr, "Options:\n");
+    fprintf(stderr, "    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile\n");
+    fprintf(stderr, "    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile\n");
+    fprintf(stderr, "    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile\n");
+    fprintf(stderr, "    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode\n");
+    additionalUsage();
+}
+
+void
+htmlBeforeUsage(char* thisProgram)
+{
+    fprintf(stderr, "<HTML>\n");
+    fprintf(stderr, "<HEAD>\n");
+    fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
+    fprintf(stderr, "</HEAD>\n");
+    fprintf(stderr, "<BODY>\n");
+    fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
+    fprintf(stderr, "<H2>Usage</H2>\n");
+    fprintf(stderr, "<PRE>\n");
+}
+
+void
+htmlAfterUsage(char* thisProgram)
+{
+    fprintf(stderr, "</PRE>\n");
+    fprintf(stderr, "</BODY>\n");
+    fprintf(stderr, "</HTML>\n");
+}
diff --git a/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/util.c b/src/Tools/mrcImage/mrcImageBlurByTemperatureFactor/src/util.c
new file mode 100755 (executable)
index 0000000..ee5e5f2
--- /dev/null
@@ -0,0 +1,4 @@
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+