OSDN Git Service

rebuild: for X86LINUX64/X86LINUX64ICC
authorTakuo Yasunaga <yasunaga@bio.kyutech.ac.jp>
Sun, 22 Jun 2014 15:06:06 +0000 (00:06 +0900)
committerTakuo Yasunaga <yasunaga@bio.kyutech.ac.jp>
Sun, 22 Jun 2014 15:06:06 +0000 (00:06 +0900)
modified:   hostdepend/X86LINUX64/bin/X86LINUX64/*
modified:   hostdepend/X86LINUX64ICC/bin/X86LINUX64ICC/*

645 files changed:
bin/X86LINUX64ICC/CheckOfOrientation
bin/X86LINUX64ICC/CommonLineCalculation
bin/X86LINUX64ICC/Descartes2Polar
bin/X86LINUX64ICC/LCalculationForOrientationSearch
bin/X86LINUX64ICC/Polar2Descartes
bin/X86LINUX64ICC/ProjectionDirectionMapCreate
bin/X86LINUX64ICC/calcCommonLine
bin/X86LINUX64ICC/coordRotation
bin/X86LINUX64ICC/ctfDeterminationFromMultiImage
bin/X86LINUX64ICC/ctfEnvelopFunction
bin/X86LINUX64ICC/ctfFunction
bin/X86LINUX64ICC/ctfInfoSet
bin/X86LINUX64ICC/ctfMultiFunction
bin/X86LINUX64ICC/dos2unix
bin/X86LINUX64ICC/electronWaveLength
bin/X86LINUX64ICC/eosPointRotation [new file with mode: 0755]
bin/X86LINUX64ICC/gmolvie
bin/X86LINUX64ICC/largeIPInfo
bin/X86LINUX64ICC/ll2ltlg
bin/X86LINUX64ICC/llDataCTFCompensate
bin/X86LINUX64ICC/llDataCompare
bin/X86LINUX64ICC/llDataContributionCalcDifferentN
bin/X86LINUX64ICC/llDataDump
bin/X86LINUX64ICC/llDataEquatorAdd
bin/X86LINUX64ICC/llDataExtract
bin/X86LINUX64ICC/llDataFit
bin/X86LINUX64ICC/llDataInfo
bin/X86LINUX64ICC/llDataLowPassFiltering
bin/X86LINUX64ICC/llDataNEstimation
bin/X86LINUX64ICC/llDataNormalization
bin/X86LINUX64ICC/llDataRescaling
bin/X86LINUX64ICC/llDataResolutionCheck
bin/X86LINUX64ICC/llDataSelectionEstimation
bin/X86LINUX64ICC/llDataWeightSet
bin/X86LINUX64ICC/llDatarMaxLimit
bin/X86LINUX64ICC/llExtractCtfinfFileCreate
bin/X86LINUX64ICC/llExtractWithLayerSeparationCtrlFileCreateMyosin
bin/X86LINUX64ICC/ltlgDataInfo
bin/X86LINUX64ICC/matrix3DEulerAngleTransform
bin/X86LINUX64ICC/matrix3DFromEulerAngle
bin/X86LINUX64ICC/matrix3DInverse
bin/X86LINUX64ICC/matrix3DToEulerAngle
bin/X86LINUX64ICC/molecularEnvelopeResampling
bin/X86LINUX64ICC/mrcFFTBandPassFilter
bin/X86LINUX64ICC/mrcImageActinSingleParticleAnalysis
bin/X86LINUX64ICC/mrcImageAddValue
bin/X86LINUX64ICC/mrcImageBoundaryInfo
bin/X86LINUX64ICC/mrcImageFFT
bin/X86LINUX64ICC/mrcImageOrientationSearchByHigherSelection
bin/X86LINUX64ICC/mrcImageOrientationSearchByHybridization
bin/X86LINUX64ICC/mrcImagePhaseCTFCompensationFromCTFINFO
bin/X86LINUX64ICC/mrcImagePolyROI
bin/X86LINUX64ICC/mrcImagePrint3D
bin/X86LINUX64ICC/mrcImageSimilarImageSearch
bin/X86LINUX64ICC/mrcImateToPointsSet
bin/X86LINUX64ICC/mrcRefImageOmegaCorrelation
bin/X86LINUX64ICC/mrcRefImagepwzCorrelationByFFT
bin/X86LINUX64ICC/pdb2SketchMacro
bin/X86LINUX64ICC/pdb2bender
bin/X86LINUX64ICC/pdb2ucd
bin/X86LINUX64ICC/pdbAtomSection
bin/X86LINUX64ICC/pdbCAOnly
bin/X86LINUX64ICC/pdbCoordAdd
bin/X86LINUX64ICC/pdbDisplay
bin/X86LINUX64ICC/pdbFileMerge
bin/X86LINUX64ICC/pdbInfo
bin/X86LINUX64ICC/pdbListRMSDCalc
bin/X86LINUX64ICC/pdbMolecularInterfaceFind
bin/X86LINUX64ICC/pdbNAMDRestraintCreate
bin/X86LINUX64ICC/pdbOneProteinGet
bin/X86LINUX64ICC/pdbProteinIDSet
bin/X86LINUX64ICC/pdbRotation
bin/X86LINUX64ICC/pdbSecondaryStructurePrint
bin/X86LINUX64ICC/pdbTempFactorSet
bin/X86LINUX64ICC/pointAffineTransform
bin/X86LINUX64ICC/psFileMerge
bin/X86LINUX64ICC/psFilePageMerge
bin/X86LINUX64ICC/randomUniformGet
bin/X86LINUX64ICC/rasmonyo
bin/X86LINUX64ICC/tgaInfo
bin/X86LINUX64ICC/vector2pdb
include/DataBase.hh [new file with mode: 0644]
include/DataBaseCorba.h [new file with mode: 0644]
include/DataBaseCorbaBank.hh [new file with mode: 0644]
include/DataBaseCorbaImpl.hh [new file with mode: 0644]
include/DataBaseCorbaManager.hh [new file with mode: 0644]
include/DataBaseJournal.hh [new file with mode: 0644]
include/DataBaseMaker.hh [new file with mode: 0644]
include/DataBaseNote.hh [new file with mode: 0644]
include/DisplayListNumber.h [new file with mode: 0644]
include/FunctionMode.hh [new file with mode: 0644]
include/NeuralNet.h [new file with mode: 0644]
include/ctfDeterminationFromPhaseComparison.h [new file with mode: 0644]
include/ctfInfoWrite2.h [new file with mode: 0644]
include/ctfZeroPoint.h [new file with mode: 0644]
include/gif_lib.h [new file with mode: 0644]
include/lCommonLineCalculation.h [new file with mode: 0644]
include/lDescartesIntoPolar.h [new file with mode: 0644]
include/lEvaluateCorrelationMapwithCommonLine.h [new file with mode: 0644]
include/lFETOrientationSearchByAnnealing.h [new file with mode: 0644]
include/lFETOrientationSearchByFeatureAlignment.h [new file with mode: 0644]
include/lFETmapOrientationSearchBySimultaneousFitting.h [new file with mode: 0644]
include/lFETsmallMapSetCreate_forSimultaneousMinimization.h [new file with mode: 0644]
include/lFRET.h [new file with mode: 0644]
include/larray2mrc.h [new file with mode: 0644]
include/lastigmatismDetection.h [new file with mode: 0644]
include/lctfDetermination.h [new file with mode: 0644]
include/lhf2000LenzCurrent.h [new file with mode: 0644]
include/lhf2000SpecimenPosition.h [new file with mode: 0644]
include/llDataPVM.h [new file with mode: 0644]
include/lll2ltlg.h [new file with mode: 0644]
include/lllDataAxisSearch.h [new file with mode: 0644]
include/lllDataCTF.h [new file with mode: 0644]
include/lllDataCTFCompensate.h [new file with mode: 0644]
include/lllDataCTFCompensation.h [new file with mode: 0644]
include/lllDataCompare.h [new file with mode: 0644]
include/lllDataContributionCalcDifferentN.h [new file with mode: 0644]
include/lllDataDifferenceCalc.h [new file with mode: 0644]
include/lllDataEquatorAdd.h [new file with mode: 0644]
include/lllDataExtract.h [new file with mode: 0644]
include/lllDataFit.h [new file with mode: 0644]
include/lllDataFitAndAverage.h [new file with mode: 0644]
include/lllDataFitParamInverse.h [new file with mode: 0644]
include/lllDataLowPassFiltering.h [new file with mode: 0644]
include/lllDataMergeDifferentN.h [new file with mode: 0644]
include/lllDataRescaling.h [new file with mode: 0644]
include/lllDatarMaxLimit.h [new file with mode: 0644]
include/lllExtract.h [new file with mode: 0644]
include/lllExtractCtfinfFileCreate.h [new file with mode: 0644]
include/lllExtractdYEstimate.h [new file with mode: 0644]
include/lltlg2mrc.h [new file with mode: 0644]
include/lmolvie.h [new file with mode: 0644]
include/lmolvieProteinStatus.h [new file with mode: 0644]
include/lmrc2Dto3D.h [new file with mode: 0644]
include/lmrc3Dto2D.h [new file with mode: 0644]
include/lmrcFSInfoScatteringAngularDistributionAverageSection.h [new file with mode: 0644]
include/lmrcImage3DPad.h [new file with mode: 0644]
include/lmrcImageDeconvolution.h [new file with mode: 0644]
include/lmrcImageFileListAndEulerAngleDataRead.h [new file with mode: 0644]
include/lmrcImageMasking.h
include/lmrcImageOrientationSearchBySimultaneousMinimization.h [new file with mode: 0644]
include/lmrcImageRhoFiltering.h
include/lmrcNeuralNet.h [new file with mode: 0644]
include/marching_cubes.h [new file with mode: 0644]
include/molvieDefault.h [new file with mode: 0644]
include/molvieDockDefault.h [new file with mode: 0644]
include/molvieFlightDefault.h [new file with mode: 0644]
include/molvieMrcViewerDefault.h [new file with mode: 0644]
include/molvieProjectionDefault.h [new file with mode: 0644]
include/molvieViewerDefault.h [new file with mode: 0644]
include/nr2.h [new file with mode: 0644]
include/powerspectraTangentLine.h [new file with mode: 0644]
include/tkImgFmtMRC.h [new file with mode: 0644]
include/tkctfInfo.h [new file with mode: 0644]
lib/X86LINUX64ICC/libAI.a
lib/X86LINUX64ICC/libAI.so
lib/X86LINUX64ICC/libArray.a
lib/X86LINUX64ICC/libArray.so
lib/X86LINUX64ICC/libCluster.a
lib/X86LINUX64ICC/libCluster.so
lib/X86LINUX64ICC/libContour.a
lib/X86LINUX64ICC/libContour.so
lib/X86LINUX64ICC/libCrystal.a
lib/X86LINUX64ICC/libCrystal.so
lib/X86LINUX64ICC/libDCDFile.a
lib/X86LINUX64ICC/libEosObjects.a
lib/X86LINUX64ICC/libEosObjects.so
lib/X86LINUX64ICC/libFile.a
lib/X86LINUX64ICC/libFile.so
lib/X86LINUX64ICC/libMATH.a
lib/X86LINUX64ICC/libMATH.so
lib/X86LINUX64ICC/libMap2D.a
lib/X86LINUX64ICC/libMap2D.so
lib/X86LINUX64ICC/libMatrix3D.a
lib/X86LINUX64ICC/libMatrix3D.so
lib/X86LINUX64ICC/libMemory.a
lib/X86LINUX64ICC/libMemory.so
lib/X86LINUX64ICC/libPVM.a
lib/X86LINUX64ICC/libPVM.so
lib/X86LINUX64ICC/libRandom.a
lib/X86LINUX64ICC/libRandom.so
lib/X86LINUX64ICC/libSocket.a
lib/X86LINUX64ICC/libSocket.so
lib/X86LINUX64ICC/libSpecialNumber.a
lib/X86LINUX64ICC/libSpecialNumber.so
lib/X86LINUX64ICC/libString.a
lib/X86LINUX64ICC/libString.so
lib/X86LINUX64ICC/libTclTk.so
lib/X86LINUX64ICC/libVector.a
lib/X86LINUX64ICC/libVector.so
lib/X86LINUX64ICC/libalsa.a
lib/X86LINUX64ICC/libalsa.so
lib/X86LINUX64ICC/libavsFile.a
lib/X86LINUX64ICC/libavsFile.so
lib/X86LINUX64ICC/libctfInfo.a
lib/X86LINUX64ICC/libctfInfo.so
lib/X86LINUX64ICC/libdsn6File.a
lib/X86LINUX64ICC/libdsn6File.so
lib/X86LINUX64ICC/libdummy.a
lib/X86LINUX64ICC/libdummy.so
lib/X86LINUX64ICC/libemData.a
lib/X86LINUX64ICC/libemData.so
lib/X86LINUX64ICC/libeosCuda.a
lib/X86LINUX64ICC/libeosCuda.so
lib/X86LINUX64ICC/libeosFunc.a [new file with mode: 0644]
lib/X86LINUX64ICC/libeosFunc.so [new file with mode: 0644]
lib/X86LINUX64ICC/libeosPThread.a
lib/X86LINUX64ICC/libeosPThread.so
lib/X86LINUX64ICC/libeosPoint.a
lib/X86LINUX64ICC/libeosPoint.so
lib/X86LINUX64ICC/libgifFile.a
lib/X86LINUX64ICC/libgifFile.so
lib/X86LINUX64ICC/libhf2000.a
lib/X86LINUX64ICC/libhf2000.so
lib/X86LINUX64ICC/liblargeIP.so
lib/X86LINUX64ICC/libllData.a
lib/X86LINUX64ICC/libllData.so
lib/X86LINUX64ICC/libltlgData.a
lib/X86LINUX64ICC/libltlgData.so
lib/X86LINUX64ICC/libmrcImage.a
lib/X86LINUX64ICC/libopenGL.a
lib/X86LINUX64ICC/libopenGL.so
lib/X86LINUX64ICC/libpdbFile.a
lib/X86LINUX64ICC/libpdbFile.so
lib/X86LINUX64ICC/libpsFile.a
lib/X86LINUX64ICC/libpsFile.so
lib/X86LINUX64ICC/libsimulation.a
lib/X86LINUX64ICC/libsimulation.so
lib/X86LINUX64ICC/libtgaFile.a
lib/X86LINUX64ICC/libtgaFile.so
lib/X86LINUX64ICC/libtransform.a
lib/X86LINUX64ICC/libtransform.so
lib/X86LINUX64ICC/shared/clusterLogRead.sharedo
lib/X86LINUX64ICC/shared/clusterLogUtil.sharedo
lib/X86LINUX64ICC/shared/clusterLogWrite.sharedo
lib/X86LINUX64ICC/shared/drawWireFrame.sharedo
lib/X86LINUX64ICC/shared/emDataRead.sharedo
lib/X86LINUX64ICC/shared/eosCuda.sharedo
lib/X86LINUX64ICC/shared/eosFunc.sharedo [new file with mode: 0644]
lib/X86LINUX64ICC/shared/eosPointCopy.sharedo [new file with mode: 0644]
lib/X86LINUX64ICC/shared/eosPointRead.sharedo
lib/X86LINUX64ICC/shared/eosPointRotate.sharedo [new file with mode: 0644]
lib/X86LINUX64ICC/shared/eosPointUtil.sharedo [new file with mode: 0644]
lib/X86LINUX64ICC/shared/eosPointWrite.sharedo [new file with mode: 0644]
lib/X86LINUX64ICC/shared/lEvaluateCorrelationMapwithCommonLine.sharedo
lib/X86LINUX64ICC/shared/lFETOrientationSearchByFeatureAlignment.sharedo
lib/X86LINUX64ICC/shared/lFETmapOrientationSearchBySimultaneousFitting.sharedo
lib/X86LINUX64ICC/shared/lFETsmallMapSetCreate_forSimultaneousMinimization.sharedo
lib/X86LINUX64ICC/shared/lFRET.sharedo
lib/X86LINUX64ICC/shared/lLcalculation.sharedo
lib/X86LINUX64ICC/shared/lllDataAxisSearch.sharedo
lib/X86LINUX64ICC/shared/lllDataFit.sharedo
lib/X86LINUX64ICC/shared/lmolecularEnvelope.sharedo
lib/X86LINUX64ICC/shared/lmolvieDisplayLib.sharedo
lib/X86LINUX64ICC/shared/lmolvieMRCread.sharedo
lib/X86LINUX64ICC/shared/lmolvieProjectionKeyboard.sharedo
lib/X86LINUX64ICC/shared/lmrc2Dto3D.sharedo
lib/X86LINUX64ICC/shared/lmrc2Dto3DSIRT.sharedo
lib/X86LINUX64ICC/shared/lmrc2gif.sharedo
lib/X86LINUX64ICC/shared/lmrc3Dto2D.sharedo
lib/X86LINUX64ICC/shared/lmrcImage3DPad.sharedo [new file with mode: 0644]
lib/X86LINUX64ICC/shared/lmrcImageAddValueCuda.sharedo
lib/X86LINUX64ICC/shared/lmrcImageCVE.sharedo
lib/X86LINUX64ICC/shared/lmrcImageClusterAnalysis.sharedo
lib/X86LINUX64ICC/shared/lmrcImageDeconvolution.sharedo [new file with mode: 0644]
lib/X86LINUX64ICC/shared/lmrcImageFileListAndEulerAngleDataRead.sharedo
lib/X86LINUX64ICC/shared/lmrcImageModelCreate.sharedo
lib/X86LINUX64ICC/shared/lmrcImageMultiplying.sharedo
lib/X86LINUX64ICC/shared/lmrcImageROInotChangeHeaderLength.sharedo
lib/X86LINUX64ICC/shared/lmrcImageRhoFiltering.sharedo
lib/X86LINUX64ICC/shared/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.sharedo
lib/X86LINUX64ICC/shared/lmrcImageSinogramCorrelationAdditionalWeight.sharedo
lib/X86LINUX64ICC/shared/lmrcImageTfunction.sharedo
lib/X86LINUX64ICC/shared/lmrcImageTriming.sharedo
lib/X86LINUX64ICC/shared/lmrcSinogramFETnormalizedMap.sharedo
lib/X86LINUX64ICC/shared/lpdb2mrc2d.sharedo
lib/X86LINUX64ICC/shared/lpdb2mrc3d.sharedo
lib/X86LINUX64ICC/shared/marching_cubes.sharedo
lib/X86LINUX64ICC/shared/matrix3DMultiplyMatrix.sharedo [new file with mode: 0644]
lib/X86LINUX64ICC/shared/memoryAllocate.sharedo
lib/X86LINUX64ICC/shared/memoryByteSwap.sharedo
lib/X86LINUX64ICC/shared/mrcImageGet.sharedo
lib/X86LINUX64ICC/shared/pdbTransCuda.sharedo
src/Objects/DataExpress/Contour/src/X86LINUX64ICC/.Depend
src/Objects/DataExpress/Contour/src/X86LINUX64ICC/Makefile
src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.a
src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.debug.a
src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.so
src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/.Depend
src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/Makefile
src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/libTclTk.so
src/Objects/DataExpress/alsa/src/X86LINUX64ICC/Makefile
src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.a
src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.debug.a
src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.so
src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/.Depend
src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/Makefile
src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.a
src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.debug.a
src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.so
src/Objects/DataExpress/eosRuby/src/X86LINUX64ICC/Makefile
src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/.Depend
src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/Makefile
src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.a
src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.debug.a
src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.so
src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/lmrc2gif.sharedo
src/Objects/DataExpress/openGL/src/X86LINUX64ICC/.Depend
src/Objects/DataExpress/openGL/src/X86LINUX64ICC/Makefile
src/Objects/DataExpress/openGL/src/X86LINUX64ICC/drawWireFrame.sharedo
src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.a
src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.debug.a
src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.so
src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayLib.sharedo
src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMRCread.sharedo
src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProjectionKeyboard.sharedo
src/Objects/DataExpress/openGL/src/X86LINUX64ICC/marching_cubes.sharedo
src/Objects/DataExpress/psFile/src/X86LINUX64ICC/.Depend
src/Objects/DataExpress/psFile/src/X86LINUX64ICC/Makefile
src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.a
src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.debug.a
src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.so
src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/libDCDFile.a
src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/libDCDFile.debug.a
src/Objects/DataManip/IMAGIC/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/MATH/src/X86LINUX64ICC/.Depend
src/Objects/DataManip/MATH/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.a
src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.debug.a
src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.so
src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/.Depend
src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.a
src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.debug.a
src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.so
src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lmolecularEnvelope.sharedo
src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.a
src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.debug.a
src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.so
src/Objects/DataManip/emData/src/X86LINUX64ICC/.Depend
src/Objects/DataManip/emData/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/emData/src/X86LINUX64ICC/emDataRead.sharedo
src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.a
src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.debug.a
src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.so
src/Objects/DataManip/khorosData/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/largeIP/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/largeIP/src/X86LINUX64ICC/liblargeIP.so
src/Objects/DataManip/llData/src/X86LINUX64ICC/.Depend
src/Objects/DataManip/llData/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.a
src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.debug.a
src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.so
src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearch.sharedo
src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFit.sharedo
src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.a
src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.debug.a
src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.so
src/Objects/DataManip/mapFile/src/X86LINUX64ICC/Makefile
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/.Depend
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/.Source
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.a
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.debug.a
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImage3DPad.c [new symlink]
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImage3DPad.sharedo [new file with mode: 0644]
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAddValueCuda.sharedo
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCVE.sharedo
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClusterAnalysis.cu [new symlink]
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClusterAnalysis.sharedo
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDeconvolution.c [new symlink]
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDeconvolution.sharedo [new file with mode: 0644]
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageModelCreate.sharedo
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMultiplying.sharedo
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROInotChangeHeaderLength.sharedo
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRhoFiltering.sharedo
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.sharedo
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTfunction.sharedo
src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTriming.sharedo
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src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC/.Depend [new file with mode: 0644]
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src/Tools/pdbUtil/pdbRotation/src/X86LINUX64ICC/.Depend
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src/Tools/pdbUtil/pdbSecondaryStructurePrint/src/X86LINUX64ICC/pdbSecondaryStructurePrint
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diff --git a/bin/X86LINUX64ICC/eosPointRotation b/bin/X86LINUX64ICC/eosPointRotation
new file mode 100755 (executable)
index 0000000..153f3ec
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diff --git a/include/DataBase.hh b/include/DataBase.hh
new file mode 100644 (file)
index 0000000..3b970a1
--- /dev/null
@@ -0,0 +1,33 @@
+#ifndef DATA_BASE_HH
+#define DATA_BASE_HH
+
+#include <pgsql/libpq-fe.h>
+#include <pgsql/postgres_ext.h>
+
+class DataBase{
+protected:
+  PGconn *con;
+  PGresult *res;
+  char* host;
+  char* port;
+  char* dbName;
+public:
+
+  DataBase();
+  void ConnectToDataBase();
+  void SetDataBaseInfo(char* hostN, char* portN, char* dbN);
+  void DisplayAll(PGresult *res);
+  void DropTable(char* TableName);
+  void DeleteTable(char* TableName);
+  void CloseDataBase();
+  void Exec(char* sql);
+  void ResClear();
+
+};
+
+
+
+
+
+
+#endif /* DATA_BASE_HH */
diff --git a/include/DataBaseCorba.h b/include/DataBaseCorba.h
new file mode 100644 (file)
index 0000000..5055835
--- /dev/null
@@ -0,0 +1,147 @@
+/*
+ *  MICO --- an Open Source CORBA implementation
+ *  Copyright (c) 1997-2003 by The Mico Team
+ *
+ *  This file was automatically generated. DO NOT EDIT!
+ */
+
+#include <CORBA.h>
+#include <mico/throw.h>
+
+#ifndef __DATABASECORBA_H__
+#define __DATABASECORBA_H__
+
+
+
+
+class DataBaseCorba;
+typedef DataBaseCorba *DataBaseCorba_ptr;
+typedef DataBaseCorba_ptr DataBaseCorbaRef;
+typedef ObjVar< DataBaseCorba > DataBaseCorba_var;
+typedef ObjOut< DataBaseCorba > DataBaseCorba_out;
+
+
+
+typedef CORBA::String_var Result[ 10 ][ 100 ];
+typedef CORBA::String_var Result_slice[ 100 ];
+typedef ArrayVarVar< CORBA::String_var,Result_slice,Result,1000 > Result_var;
+typedef ArrayVarOut < CORBA::String_var,Result_slice,Result,1000 > Result_out;
+enum _dummy_Result { _dummy_Result_0 };
+typedef ArrayVarForAny < CORBA::String_var,Result_slice,Result,1000,_dummy_Result> Result_forany;
+#undef MICO_ARRAY_ARG
+#define MICO_ARRAY_ARG CORBA::String_var
+DECLARE_ARRAY_ALLOC(Result,MICO_ARRAY_ARG,Result_slice,1000)
+DECLARE_ARRAY_DUP(Result,MICO_ARRAY_ARG,Result_slice,1000)
+DECLARE_ARRAY_FREE(Result,MICO_ARRAY_ARG,Result_slice,1000)
+DECLARE_ARRAY_COPY(Result,MICO_ARRAY_ARG,Result_slice,1000)
+
+/*
+ * Base class and common definitions for interface DataBaseCorba
+ */
+
+class DataBaseCorba : 
+  virtual public CORBA::Object
+{
+  public:
+    virtual ~DataBaseCorba();
+
+    #ifdef HAVE_TYPEDEF_OVERLOAD
+    typedef DataBaseCorba_ptr _ptr_type;
+    typedef DataBaseCorba_var _var_type;
+    #endif
+
+    static DataBaseCorba_ptr _narrow( CORBA::Object_ptr obj );
+    static DataBaseCorba_ptr _narrow( CORBA::AbstractBase_ptr obj );
+    static DataBaseCorba_ptr _duplicate( DataBaseCorba_ptr _obj )
+    {
+      CORBA::Object::_duplicate (_obj);
+      return _obj;
+    }
+
+    static DataBaseCorba_ptr _nil()
+    {
+      return 0;
+    }
+
+    virtual void *_narrow_helper( const char *repoid );
+
+    virtual void SetKey( const char* sql ) = 0;
+    virtual ::Result_slice* Display( CORBA::Long i ) = 0;
+
+  protected:
+    DataBaseCorba() {};
+  private:
+    DataBaseCorba( const DataBaseCorba& );
+    void operator=( const DataBaseCorba& );
+};
+
+// Stub for interface DataBaseCorba
+class DataBaseCorba_stub:
+  virtual public DataBaseCorba
+{
+  public:
+    virtual ~DataBaseCorba_stub();
+    void SetKey( const char* sql );
+    ::Result_slice* Display( CORBA::Long i );
+
+  private:
+    void operator=( const DataBaseCorba_stub& );
+};
+
+#ifndef MICO_CONF_NO_POA
+
+class DataBaseCorba_stub_clp :
+  virtual public DataBaseCorba_stub,
+  virtual public PortableServer::StubBase
+{
+  public:
+    DataBaseCorba_stub_clp (PortableServer::POA_ptr, CORBA::Object_ptr);
+    virtual ~DataBaseCorba_stub_clp ();
+    void SetKey( const char* sql );
+    ::Result_slice* Display( CORBA::Long i );
+
+  protected:
+    DataBaseCorba_stub_clp ();
+  private:
+    void operator=( const DataBaseCorba_stub_clp & );
+};
+
+#endif // MICO_CONF_NO_POA
+
+#ifndef MICO_CONF_NO_POA
+
+class POA_DataBaseCorba : virtual public PortableServer::StaticImplementation
+{
+  public:
+    virtual ~POA_DataBaseCorba ();
+    DataBaseCorba_ptr _this ();
+    bool dispatch (CORBA::StaticServerRequest_ptr);
+    virtual void invoke (CORBA::StaticServerRequest_ptr);
+    virtual CORBA::Boolean _is_a (const char *);
+    virtual CORBA::InterfaceDef_ptr _get_interface ();
+    virtual CORBA::RepositoryId _primary_interface (const PortableServer::ObjectId &, PortableServer::POA_ptr);
+
+    virtual void * _narrow_helper (const char *);
+    static POA_DataBaseCorba * _narrow (PortableServer::Servant);
+    virtual CORBA::Object_ptr _make_stub (PortableServer::POA_ptr, CORBA::Object_ptr);
+
+    virtual void SetKey( const char* sql ) = 0;
+    virtual ::Result_slice* Display( CORBA::Long i ) = 0;
+
+  protected:
+    POA_DataBaseCorba () {};
+
+  private:
+    POA_DataBaseCorba (const POA_DataBaseCorba &);
+    void operator= (const POA_DataBaseCorba &);
+};
+
+#endif // MICO_CONF_NO_POA
+
+extern CORBA::StaticTypeInfo *_marshaller_DataBaseCorba;
+
+extern CORBA::StaticTypeInfo *_marshaller__a10__a100_string;
+
+extern CORBA::StaticTypeInfo *_marshaller__a100_string;
+
+#endif
diff --git a/include/DataBaseCorbaBank.hh b/include/DataBaseCorbaBank.hh
new file mode 100644 (file)
index 0000000..121a1ff
--- /dev/null
@@ -0,0 +1,18 @@
+#ifndef DATABASECORBABANK_IMPL_HH
+#define DATABASECORBABANK_IMPL_HH
+#include "DataBaseCorba.h"
+#include "CORBA.h"
+#include "DataBaseCorbaImpl.hh"
+
+class Bank_impl : virtual public POA_Bank,public DataBase
+{
+public:
+// Bank_impl (PortableServer::POA_ptr);
+ DataBaseCorba_ptr create ();
+       void ConnectDatabase(char* host, char* port, char* database);
+private:
+ PortableServer::POA_var mypoa;
+};
+
+
+#endif /* DATABASECORBABANK_IMPL_HH */ 
diff --git a/include/DataBaseCorbaImpl.hh b/include/DataBaseCorbaImpl.hh
new file mode 100644 (file)
index 0000000..5998fff
--- /dev/null
@@ -0,0 +1,18 @@
+#ifndef DATABASECORBA_IMPL_HH
+#define DATABASECORBA_IMPL_HH
+#include "DataBaseCorba.h"
+#include "CORBA.h"
+#include "DataBase.hh"
+#include <coss/CosNaming.h>
+class DataBaseCorba_impl:virtual public POA_DataBaseCorba,public DataBase
+{
+  public:
+       DataBaseCorba_impl();   
+       void SetKey(const char* sql);
+       Result_slice* Display(const CORBA::Long i);
+       void ConnectDatabase(char *H,char *P,char *DB);
+};
+
+
+
+#endif /* DATABASECORBA_IMPL_HH */
diff --git a/include/DataBaseCorbaManager.hh b/include/DataBaseCorbaManager.hh
new file mode 100644 (file)
index 0000000..fe54a9c
--- /dev/null
@@ -0,0 +1,17 @@
+#ifndef DATABASECORBA_MANAGER_HH
+#define DATABASECORBA_MANAGER_HH
+
+#include "CORBA.h"
+#include "DataBaseCorba.h"
+#include "DataBaseCorbaImpl.hh"
+#include "DataBaseCorbaBank.hh"
+
+class DataBaseCorbaManager : public virtual POA_PortableServer::ServantActivator
+{
+public:
+ PortableServer::Servant incarnate (const PortableServer::ObjectId &,PortableServer::POA_ptr);
+ void etherealize (const PortableServer::ObjectId &, PortableServer::POA_ptr, PortableServer::Servant, CORBA::Boolean,CORBA::Boolean);
+
+};
+
+#endif /* DATABASECORBA_MANAGER_HH */
diff --git a/include/DataBaseJournal.hh b/include/DataBaseJournal.hh
new file mode 100644 (file)
index 0000000..6d7c39f
--- /dev/null
@@ -0,0 +1,13 @@
+#ifndef DATABASE_JOURNAL_HH
+#define DATABASE_JOURNAL_HH
+
+class DataBaseJournal : public DataBase{
+private:
+       DataBase* index;
+       
+public:
+ DataBaseJournal(char* H,char* P);
+ void SetKey(char* PDBcord,char* Residues);
+};
+
+#endif /* DATABASE_JOURNAL_HH */ 
diff --git a/include/DataBaseMaker.hh b/include/DataBaseMaker.hh
new file mode 100644 (file)
index 0000000..497e23e
--- /dev/null
@@ -0,0 +1,18 @@
+#ifndef DATA_BASE_MAKER_HH
+#define DATA_BASE_MAKER_HH
+
+#include "DataBase.hh"
+#include <stdio.h>
+#include "pdbFile.h"
+
+class DataBaseMaker : public DataBase{
+private:
+  char TabFileName[20];
+
+public:
+  DataBaseMaker(FILE* TabFile, pdbFile* pdb);
+  DataBaseMaker(FILE* TabFile);
+  void InputToDataBase(FILE* TabFile);
+};
+
+#endif /* DATA_BASE_MAKER */
diff --git a/include/DataBaseNote.hh b/include/DataBaseNote.hh
new file mode 100644 (file)
index 0000000..18efdf5
--- /dev/null
@@ -0,0 +1,16 @@
+#ifndef DATABASE_NOTE_HH
+#define DATABASE_NOTE_HH
+
+#include "DataBase.hh"
+#include "Property.hh"
+
+class DataBaseNote : public DataBase{
+private:
+  Property* Prop;
+
+public:
+  DataBaseNote(Property* p);
+  void SetKey(char* AtomName, char* ResName , int ResNum);
+};
+
+#endif /* DATABASE_NOTE_HH */
diff --git a/include/DisplayListNumber.h b/include/DisplayListNumber.h
new file mode 100644 (file)
index 0000000..d608b23
--- /dev/null
@@ -0,0 +1,29 @@
+/*
+# DisplayListNumber.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : DisplayListNumber.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+static GLuint drawatomc=1;
+static GLuint drawatomca=2;
+static GLuint drawatomo=3;
+static GLuint drawatomn=4;
+static GLuint drawatoms=5;
+static GLuint drawatomp=6;
+static GLuint drawatomh=7;
+static GLuint drawatomfe=8;
+static GLuint drawstick=9;
+static GLuint drawatomserial=10;
+static GLuint drawresidue=11;
+static GLuint drawtemp=12;
+static GLuint drawsticktemp=13;
+static GLuint drawstickresidue=14;
+static GLuint drawsurface=15;
+static GLuint drawdistancefromtarget=100;
+static GLuint drawwireframe=101;
+static GLuint drawchain=102;
diff --git a/include/FunctionMode.hh b/include/FunctionMode.hh
new file mode 100644 (file)
index 0000000..7ab817d
--- /dev/null
@@ -0,0 +1,80 @@
+#ifndef FUNCTION_MODE_HH
+#define FUNCTION_MODE_HH
+
+
+enum DisplayMode{
+  SpaceFill,
+  Point,
+  BackBone
+};
+
+enum AtomMode{
+  AtomModeAll,
+  AtomModeCA
+};
+
+enum ColorMode{
+  Monochrome,
+  CPK,
+  Group,
+  Amino,
+  Temperature,
+  HomoColor
+};
+
+enum PickMode{
+  Default,
+  ResNumber,
+  AtomName,
+  ResName,
+  ChainID,
+  Memo,
+  Homology
+};
+
+enum HomologyMode{
+  AllData,
+  Percentage,
+  EachData,
+  ChangeColor
+};
+
+enum PickStatus{
+  Search,
+  Delete,
+  Create,
+};
+
+/*
+enum CG{
+  CGAll,
+  CGCAonly
+};
+*/
+/*
+enum TextMode{
+  ResidueSequenceNumber,
+  AtomName,
+  ResidueName,
+  ChainIdentifier,
+  AllSet,
+  Homology
+};
+*/
+
+/*
+enum HomologyMode{
+  AllView,
+  Percentage,
+  EachData,
+  Color
+};
+*/
+/*
+enum ViewerMode{
+  SpaceFill=0,
+  BackBone=1
+};
+*/
+
+#endif /* FUNCTION_MODE */
diff --git a/include/NeuralNet.h b/include/NeuralNet.h
new file mode 100644 (file)
index 0000000..99dc609
--- /dev/null
@@ -0,0 +1,19 @@
+#ifndef NUERALNET_H
+#define NUERALNET_H
+
+typedef struct NeuralNetInfo {
+       int  numOfLayer;
+       int* numOfCellOfLayer; 
+       int  numOfSeparation;
+       int  numOfPositive;
+       int  numOfNegative;
+       int* bias;
+       double Lambda;
+} NeuralNetInfo;
+
+extern void neuralNetOutputLayerCalculation(double** cell, double*** weight, NeuralNetInfo* linfo, int mode);
+extern double neuralNetSigmoidalFunction(double cell);
+extern void neuralNetRandomToWeight(double*** weight , NeuralNetInfo* linfo);
+extern void neuralNetBackPropagation(double** cell, double*** weight, double Teacher, NeuralNetInfo* linfo, int mode);
+
+#endif
diff --git a/include/ctfDeterminationFromPhaseComparison.h b/include/ctfDeterminationFromPhaseComparison.h
new file mode 100644 (file)
index 0000000..04c1531
--- /dev/null
@@ -0,0 +1,24 @@
+#ifndef CTF_DETERMINATION_FROM_PHASE_H
+#define CTF_DETERMINATION_FROM_PHASE_H
+
+/* struct begin */
+typedef struct ctfInfoDeterminationFromPhaseComparison {
+       ctfInfo val;
+       ctfInfo min;
+       ctfInfo max;
+       ctfInfo del;
+       mrcImageParaTypeReal Rmax;
+       long mode;
+} ctfInfoDeterminationFromPhaseComparison;
+/* struct end */
+
+/* prototype begin */
+extern double ctfDeterminationFromPhaseComparison(
+                    mrcImage* inFFT,   
+                    mrcImage* refFFT,  
+                        ctfInfoDeterminationFromPhaseComparison* DetInfo, 
+                    long mode);
+
+/* prototype end */
+
+#endif /* CTF_DETERMINATION_FROM_PHASE_H */
diff --git a/include/ctfInfoWrite2.h b/include/ctfInfoWrite2.h
new file mode 100644 (file)
index 0000000..d607319
--- /dev/null
@@ -0,0 +1,23 @@
+/*
+# ctfInfoWrite2.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : ctfInfoWrite2.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef CTF_INFO_WRITE2_H
+#define CTF_INFO_WRITE2_H
+
+#include "mrcImage.h"
+#include "ctfInfo.h"
+#include "lctfDetermination.h"
+
+/*prototype begin*/
+extern void ctfInfoWrite2(FILE* fpt,lctfDetermineInfo linfo, char* head);
+/*prototype end*/
+
+#endif/*CTF_INFO_WRITE2_H*/
diff --git a/include/ctfZeroPoint.h b/include/ctfZeroPoint.h
new file mode 100644 (file)
index 0000000..5b601e0
--- /dev/null
@@ -0,0 +1,16 @@
+/* struct begin */
+
+typedef struct ctfInfoZeroPoint {
+       float RMax;      /* RMax */
+       float dR;        /* delta R */
+       int   N;         /* Zero Point Number */
+       long mode;
+} ctfInfoZeroPoint;
+
+/* struct end */
+
+/* prototype begin */
+
+extern float ctfZeroPoint(ctfInfo* info, ctfInfoZeroPoint* infoZeroPoint, long mode);
+
+/* prototype end */
diff --git a/include/gif_lib.h b/include/gif_lib.h
new file mode 100644 (file)
index 0000000..f9aca21
--- /dev/null
@@ -0,0 +1,278 @@
+/******************************************************************************
+* In order to make life a little bit easier when using the GIF file format,   *
+* this library was written, and which does all the dirty work...             *
+*                                                                            *
+*                                      Written by Gershon Elber,  Jun. 1989  *
+*                                      Hacks by Eric S. Raymond,  Sep. 1992  *
+*******************************************************************************
+* History:                                                                   *
+* 14 Jun 89 - Version 1.0 by Gershon Elber.                                  *
+*  3 Sep 90 - Version 1.1 by Gershon Elber (Support for Gif89, Unique names). *
+* 15 Sep 90 - Version 2.0 by Eric S. Raymond (Changes to suoport GIF slurp)   *
+******************************************************************************/
+
+#ifndef GIF_LIB_H
+#define GIF_LIB_H
+
+#define GIF_LIB_VERSION        " Version 2.0, "
+
+#define        GIF_ERROR       0
+#define GIF_OK         1
+
+#ifndef TRUE
+#define TRUE           1
+#define FALSE          0
+#endif
+
+#ifndef NULL
+#define NULL           0
+#endif /* NULL */
+
+#define GIF_FILE_BUFFER_SIZE 16384  /* Files uses bigger buffers than usual. */
+
+typedef        int             GifBooleanType;
+typedef        unsigned char   GifPixelType;
+typedef unsigned char *        GifRowType;
+typedef unsigned char  GifByteType;
+
+#define GIF_MESSAGE(Msg) fprintf(stderr, "\n%s: %s\n", PROGRAM_NAME, Msg)
+#define GIF_EXIT(Msg)  { GIF_MESSAGE(Msg); exit(-3); }
+
+#ifdef SYSV
+#define VoidPtr char *
+#else
+#define VoidPtr void *
+#endif /* SYSV */
+
+typedef struct GifColorType {
+    GifByteType Red, Green, Blue;
+} GifColorType;
+
+typedef struct ColorMapObject
+{
+    int        ColorCount;
+    int BitsPerPixel;
+    GifColorType *Colors;              /* on malloc(3) heap */
+}
+ColorMapObject;
+
+typedef struct GifImageDesc {
+    int Left, Top, Width, Height,      /* Current image dimensions. */
+       Interlace;                      /* Sequential/Interlaced lines. */
+    ColorMapObject *ColorMap;          /* The local color map */
+} GifImageDesc;
+
+typedef struct GifFileType {
+    int SWidth, SHeight,               /* Screen dimensions. */
+       SColorResolution,               /* How many colors can we generate? */
+       SBackGroundColor;               /* I hope you understand this one... */
+    ColorMapObject *SColorMap;         /* NULL if not exists. */
+    int ImageCount;                    /* Number of current image */
+    GifImageDesc Image;                        /* Block describing current image */
+    struct SavedImage *SavedImages;    /* Use this to accumulate file state */
+    VoidPtr Private;                   /* Don't mess with this! */
+} GifFileType;
+
+typedef enum {
+    UNDEFINED_RECORD_TYPE,
+    SCREEN_DESC_RECORD_TYPE,
+    IMAGE_DESC_RECORD_TYPE,            /* Begin with ',' */
+    EXTENSION_RECORD_TYPE,             /* Begin with '!' */
+    TERMINATE_RECORD_TYPE              /* Begin with ';' */
+} GifRecordType;
+
+/* DumpScreen2Gif routine constants identify type of window/screen to dump.  */
+/* Note all values below 1000 are reserved for the IBMPC different display   */
+/* devices (it has many!) and are compatible with the numbering TC2.0        */
+/* (Turbo C 2.0 compiler for IBM PC) gives to these devices.                */
+typedef enum {
+    GIF_DUMP_SGI_WINDOW = 1000,
+    GIF_DUMP_X_WINDOW = 1001
+} GifScreenDumpType;
+
+/******************************************************************************
+* O.K., here are the routines one can access in order to encode GIF file:     *
+* (GIF_LIB file EGIF_LIB.C).                                                 *
+******************************************************************************/
+
+GifFileType *EGifOpenFileName(char *GifFileName, int GifTestExistance);
+GifFileType *EGifOpenFileHandle(int GifFileHandle);
+int EGifSpew(GifFileType *GifFile);
+void EGifSetGifVersion(char *Version);
+int EGifPutScreenDesc(GifFileType *GifFile,
+       int GifWidth, int GifHeight, int GifColorRes, int GifBackGround,
+       ColorMapObject *GifColorMap);
+int EGifPutImageDesc(GifFileType *GifFile,
+       int GifLeft, int GifTop, int Width, int GifHeight, int GifInterlace,
+       ColorMapObject *GifColorMap);
+int EGifPutLine(GifFileType *GifFile, GifPixelType *GifLine, int GifLineLen);
+int EGifPutPixel(GifFileType *GifFile, GifPixelType GifPixel);
+int EGifPutComment(GifFileType *GifFile, char *GifComment);
+int EGifPutExtension(GifFileType *GifFile, int GifExtCode, int GifExtLen,
+                                                       VoidPtr GifExtension);
+int EGifPutCode(GifFileType *GifFile, int GifCodeSize,
+                                                  GifByteType *GifCodeBlock);
+int EGifPutCodeNext(GifFileType *GifFile, GifByteType *GifCodeBlock);
+int EGifCloseFile(GifFileType *GifFile);
+
+#define        E_GIF_ERR_OPEN_FAILED   1               /* And EGif possible errors. */
+#define        E_GIF_ERR_WRITE_FAILED  2
+#define E_GIF_ERR_HAS_SCRN_DSCR        3
+#define E_GIF_ERR_HAS_IMAG_DSCR        4
+#define E_GIF_ERR_NO_COLOR_MAP 5
+#define E_GIF_ERR_DATA_TOO_BIG 6
+#define E_GIF_ERR_NOT_ENOUGH_MEM 7
+#define E_GIF_ERR_DISK_IS_FULL 8
+#define E_GIF_ERR_CLOSE_FAILED 9
+#define E_GIF_ERR_NOT_WRITEABLE        10
+
+/******************************************************************************
+* O.K., here are the routines one can access in order to decode GIF file:     *
+* (GIF_LIB file DGIF_LIB.C).                                                 *
+******************************************************************************/
+
+GifFileType *DGifOpenFileName(const char *GifFileName);
+GifFileType *DGifOpenFileHandle(int GifFileHandle);
+int DGifSlurp(GifFileType *GifFile);
+int DGifGetScreenDesc(GifFileType *GifFile);
+int DGifGetRecordType(GifFileType *GifFile, GifRecordType *GifType);
+int DGifGetImageDesc(GifFileType *GifFile);
+int DGifGetLine(GifFileType *GifFile, GifPixelType *GifLine, int GifLineLen);
+int DGifGetPixel(GifFileType *GifFile, GifPixelType GifPixel);
+int DGifGetComment(GifFileType *GifFile, char *GifComment);
+int DGifGetExtension(GifFileType *GifFile, int *GifExtCode,
+                                               GifByteType **GifExtension);
+int DGifGetExtensionNext(GifFileType *GifFile, GifByteType **GifExtension);
+int DGifGetCode(GifFileType *GifFile, int *GifCodeSize,
+                                               GifByteType **GifCodeBlock);
+int DGifGetCodeNext(GifFileType *GifFile, GifByteType **GifCodeBlock);
+int DGifGetLZCodes(GifFileType *GifFile, int *GifCode);
+int DGifCloseFile(GifFileType *GifFile);
+
+#define        D_GIF_ERR_OPEN_FAILED   101             /* And DGif possible errors. */
+#define        D_GIF_ERR_READ_FAILED   102
+#define        D_GIF_ERR_NOT_GIF_FILE  103
+#define D_GIF_ERR_NO_SCRN_DSCR 104
+#define D_GIF_ERR_NO_IMAG_DSCR 105
+#define D_GIF_ERR_NO_COLOR_MAP 106
+#define D_GIF_ERR_WRONG_RECORD 107
+#define D_GIF_ERR_DATA_TOO_BIG 108
+#define D_GIF_ERR_NOT_ENOUGH_MEM 109
+#define D_GIF_ERR_CLOSE_FAILED 110
+#define D_GIF_ERR_NOT_READABLE 111
+#define D_GIF_ERR_IMAGE_DEFECT 112
+#define D_GIF_ERR_EOF_TOO_SOON 113
+
+/******************************************************************************
+* O.K., here are the routines from GIF_LIB file QUANTIZE.C.                  *
+******************************************************************************/
+int QuantizeBuffer(unsigned int Width, unsigned int Height, int *ColorMapSize,
+       GifByteType *RedInput, GifByteType *GreenInput, GifByteType *BlueInput,
+       GifByteType *OutputBuffer, GifColorType *OutputColorMap);
+
+
+/******************************************************************************
+* O.K., here are the routines from GIF_LIB file QPRINTF.C.                   *
+******************************************************************************/
+extern int GifQuietPrint;
+
+#ifdef USE_VARARGS
+extern void GifQprintf();
+#else
+extern void GifQprintf(char *Format, ...);
+#endif /* USE_VARARGS */
+
+/******************************************************************************
+* O.K., here are the routines from GIF_LIB file GIF_ERR.C.                   *
+******************************************************************************/
+extern void PrintGifError(void);
+extern int GifLastError(void);
+
+/******************************************************************************
+* O.K., here are the routines from GIF_LIB file DEV2GIF.C.                   *
+******************************************************************************/
+extern int DumpScreen2Gif(char *FileName,
+                         int ReqGraphDriver,
+                         int ReqGraphMode1,
+                         int ReqGraphMode2,
+                         int ReqGraphMode3);
+
+/*****************************************************************************
+ *
+ * Everything below this point is new after version 1.2, supporting `slurp
+ * mode' for doing I/O in two big belts with all the image-bashing in core.
+ *
+ *****************************************************************************/
+
+/******************************************************************************
+* Color Map handling from ALLOCGIF.C                                         *
+******************************************************************************/
+
+extern ColorMapObject *MakeMapObject(int ColorCount, GifColorType *ColorMap);
+extern void FreeMapObject(ColorMapObject *Object);
+extern ColorMapObject *UnionColorMap(ColorMapObject *ColorIn1,
+                             ColorMapObject *ColorIn2,
+                             GifPixelType ColorTransIn2[]);
+extern int BitSize(int n);
+
+/******************************************************************************
+* Support for the in-core structures allocation (slurp mode).                *
+******************************************************************************/
+
+/* This is the in-core version of an extension record */
+typedef struct {
+    int                ByteCount;
+    char       *Bytes;         /* on malloc(3) heap */
+} ExtensionBlock;
+
+/* This holds an image header, its unpacked raster bits, and extensions */
+typedef struct SavedImage {
+    GifImageDesc       ImageDesc;
+
+    char               *RasterBits;            /* on malloc(3) heap */
+
+    int                        Function;
+    int                        ExtensionBlockCount;
+    ExtensionBlock     *ExtensionBlocks;       /* on malloc(3) heap */
+} SavedImage;
+
+extern void ApplyTranslation(SavedImage *Image, GifPixelType Translation[]);
+
+extern void MakeExtension(SavedImage *New, int Function);
+extern int AddExtensionBlock(SavedImage *New, int Len, char ExtData[]);
+extern void FreeExtension(SavedImage *Image);
+
+extern SavedImage *MakeSavedImage(GifFileType *GifFile, SavedImage *CopyFrom);
+extern void FreeSavedImages(GifFileType *GifFile);
+
+/******************************************************************************
+* The library's internal utility font                                        *
+******************************************************************************/
+
+#define GIF_FONT_WIDTH 8
+#define GIF_FONT_HEIGHT        8
+extern unsigned char AsciiTable[][GIF_FONT_WIDTH];
+
+extern void DrawText(SavedImage *Image,
+                    const int x, const int y,
+                    const char *legend,
+                    const int color);
+
+extern void DrawBox(SavedImage *Image,
+                    const int x, const int y,
+                    const int w, const int d,
+                    const int color);
+
+void DrawRectangle(SavedImage *Image,
+                    const int x, const int y,
+                    const int w, const int d,
+                    const int color);
+
+extern void DrawBoxedText(SavedImage *Image,
+                    const int x, const int y,
+                    const char *legend,
+                    const int border,
+                    const int bg,
+                    const int fg);
+
+#endif /* GIF_LIB_H */
diff --git a/include/lCommonLineCalculation.h b/include/lCommonLineCalculation.h
new file mode 100644 (file)
index 0000000..e02a1d2
--- /dev/null
@@ -0,0 +1,41 @@
+/*
+# lCommonLineCalculation.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lCommonLineCalculation.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#define GLOBAL_DECLARATION
+
+#define DEBUG
+#include "genUtil.h"
+#include "Matrix3D.h"
+
+typedef struct lCommonLineCalculationInfo {
+       char** I1RotationalMode;
+       char** I2RotationalMode;
+       float* I1Angle1;
+       float* I1Angle2;
+       float* I1Angle3;
+       float* I2Angle1;
+       float* I2Angle2;
+       float* I2Angle3;
+       float* CLAngleOnI1AgainstI2;
+       float* CLAngleOnI2AgainstI1;
+       int    num;
+       int*   flag;
+} lCommonLineCalculationInfo;
+
+void
+lCommonLineCalculation(lCommonLineCalculationInfo* linfo, int i, int mode);
+
+double
+lCommonLineCalculation1(lCommonLineCalculationInfo* linfo, int i, int mode);
diff --git a/include/lDescartesIntoPolar.h b/include/lDescartesIntoPolar.h
new file mode 100644 (file)
index 0000000..3bdff5c
--- /dev/null
@@ -0,0 +1,45 @@
+#ifndef __L_DESCARTES_INTO_PLAR_H
+#define __L_DESCARTES_INTO_PLAR_H
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lDecartesIntoPolar.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lDecartesIntoPolar.h 
+#%Z% Attention
+#%Z%
+*/
+
+/* struct begin */
+typedef struct DescartesCoord {
+       double x;       
+       double y;       
+       double z;       
+} DescartesCoord;
+
+typedef struct PolarCoord {
+       double r;       
+       double theta;   
+       double phi;     
+} PolarCoord;
+
+typedef struct lDescartesIntoPolarInfo {
+       DescartesCoord centre;
+       DescartesCoord xaxis;
+       DescartesCoord yaxis;
+       DescartesCoord zaxis;
+       DescartesCoord xaxisInv;
+       DescartesCoord yaxisInv;
+       DescartesCoord zaxisInv;
+} lDescartesIntoPolarInfo;
+/* struct end */
+
+/* prototype begin */ 
+extern void lDescartesAxisCalc(lDescartesIntoPolarInfo* linfo, int mode);
+extern PolarCoord lDescartesCoordIntoPolarCoord(DescartesCoord p, lDescartesIntoPolarInfo info, int mode);
+extern DescartesCoord lPolarCoordIntoDescartesCoord(PolarCoord p, lDescartesIntoPolarInfo info, int mode);
+/* prototype end */
+
+#endif /* __L_DESCARTES_INTO_PLAR_H */
diff --git a/include/lEvaluateCorrelationMapwithCommonLine.h b/include/lEvaluateCorrelationMapwithCommonLine.h
new file mode 100644 (file)
index 0000000..bd4f9b6
--- /dev/null
@@ -0,0 +1,51 @@
+/*
+# lEvaluateCorrelationMapwithCommonLine.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lEvaluateCorrelationMapwithCommonLine.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#include<stdio.h>
+#include<math.h>
+#include "mrcImage.h"
+#include<stdlib.h> 
+
+typedef struct lEvaluateCorrelationMapwithCommonLineInfo{
+       FILE* In;
+       int listLength;
+       FILE* InC;
+       FILE* Out;
+       int PA;
+       int PN;
+       double PDT;
+       int mode;
+}lEvaluateCorrelationMapwithCommonLineInfo;
+
+typedef struct lmrcSCMEpeakDetectPixelInfo{
+       int x; 
+       int y;
+       double distance;
+       int rank;
+}lmrcSCMEpeakDetectPixelInfo;
+
+typedef struct lmrcSCMEpeakDetectInfo{
+       int flagOut;
+       mrcImage* Out;
+       int flagThreshold;
+       double Threshold;
+       int flagCount;
+       int Count;
+       lmrcSCMEpeakDetectPixelInfo peak[1000];  
+       lmrcSCMEpeakDetectPixelInfo highestPeak[50];
+       double MaxI;
+       int PA;
+       double PDT;
+       int mode;
+}lmrcSCMEpeakDetectInfo;
+
+extern void lEvaluateCorrelationMapwithCommonLine(lEvaluateCorrelationMapwithCommonLineInfo info, int mode);
+extern void lmrcSCMEpeakDetect(mrcImage* in, lmrcSCMEpeakDetectInfo* info, int mode);
diff --git a/include/lFETOrientationSearchByAnnealing.h b/include/lFETOrientationSearchByAnnealing.h
new file mode 100644 (file)
index 0000000..e525534
--- /dev/null
@@ -0,0 +1,89 @@
+/*
+# lFETOrientationSearchByAnnealing.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lFETOrientationSearchByAnnealing.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+
+#include<stdio.h>
+#include<math.h>
+#include "mrcImage.h"
+#include<stdlib.h>
+#include "lCommonLineCalculation.h"
+
+
+typedef struct lFETOrientationSearchByAnnealingInfo{
+       mrcImage* InMS;
+       FILE* InFL;
+       FILE* InML;
+       int fnum;
+       int flagInML;
+       double ITemp;
+       int as1;
+       double as2;
+       int as3;
+       FILE* Out;
+       int mode;
+}lFETOrientationSearchByAnnealingInfo;
+
+typedef struct lFETsimultaneousMinimizationDataSet{
+       mrcImage* map;
+       int dImage;
+       unsigned* sflag; 
+       double* cAngle[3];  //3 means euler angle set
+       double dAngle[3];   //
+       int** cPos[3];      //3  x, y, z
+       int* dPos[3];       // 
+       double** cUs;
+       double* dUs;
+       double cU;
+       double dU;
+       double* cUt;
+       lCommonLineCalculationInfo* clc;
+       int n, z;
+       int mode;
+}lFETsimultaneousMinimizationDataSet;
+
+
+
+typedef struct lFETOrientationSearchByAnnealingDataSet{
+       int fnum;
+       mrcImage* FETs;
+       mrcImage* maps; 
+       double** angles;
+       double** CPVtable;
+       int current;
+       double angle[3];
+       double* CPVtemp;
+       int mode;
+}lFETOrientationSearchByAnnealingDataSet;
+
+
+
+
+
+
+
+
+extern void lFETOrientationSearchByAnnealing(lFETOrientationSearchByAnnealingInfo info, int mode);
+extern void lFETOrientationSearchByRigidSubsetCore(lFETOrientationSearchByAnnealingInfo info, int mode);
+extern void lFETOrientationSearchByRigidSubsetCore_Search(lFETsimultaneousMinimizationDataSet* , int );
+extern void lFETsimultaneousMinimizationDataSetMemoryAllocate(lFETsimultaneousMinimizationDataSet* in, int n, int mode);
+extern void lFETsimultaneousMinimizationRandomParaSet(lFETsimultaneousMinimizationDataSet* in, int mode);
+extern void lFETsimultaneousMinimizationLcalculate(lFETsimultaneousMinimizationDataSet* in, int mode);
+extern void lFETsimultaneousMinimizationOverWrite(lFETsimultaneousMinimizationDataSet* in, int mode);
+
+
+
+
+
+
+
+
+
+
diff --git a/include/lFETOrientationSearchByFeatureAlignment.h b/include/lFETOrientationSearchByFeatureAlignment.h
new file mode 100644 (file)
index 0000000..03b3216
--- /dev/null
@@ -0,0 +1,187 @@
+/*
+# lFETOrientationSearchByFeatureAlignment.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lFETOrientationSearchByFeatureAlignment.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+
+
+#include <stdio.h>
+#include <stdlib.h>
+#include<math.h>
+#include "genUtil.h"
+#include "Memory.h"
+#include "File.h"
+#include "String.h"
+#include "mrcImage.h"
+#include "Array.h"
+//#include "../../mrcImage/src/lmrcSinogramFET.h"
+#include "lmrcSinogramFET.h"
+#include "Matrix3D.h"
+#include "lFETmapOrientationSearchBySimultaneousFitting.h"
+#define SphereDevNum 2100 
+
+typedef struct lFETOrientationSearchByFeatureAlignmentInfo{
+    FILE* In;
+       FILE* In2;
+    int flagInType; // 0:Sinogram 1:FET
+       int flagIn2;
+    FILE* Out;
+       int ldn;
+       double srl;
+       int flagInA, flagOutA, flagOut2D, flagOutLOG;
+       int itmax, devmax, mitmax, mdevmax;
+       FILE* InA;
+       FILE* OutA;
+       FILE* Out2D;
+       FILE* OutLOG;
+    int mode;
+}lFETOrientationSearchByFeatureAlignmentInfo;
+
+typedef struct lFETFeatureAlignmentCoord{
+       double x, y, z;
+}lFETFeatureAlignmentCoord;
+
+typedef struct lFETFeatureAlignmentFeature{
+       double t, w, a, k;
+}lFETFeatureAlignmentFeature;
+
+/*typedef struct lFETFeatureAlignmentImageInfoClass{
+       int max, min;
+       int group;
+}lFETFeatureAlignmentImageInfoClass;
+*/                                                              
+
+typedef struct lFETFeatureAlignmentSpherePointInfo{
+       lFETFeatureAlignmentCoord self;
+       lFETFeatureAlignmentFeature fets;
+       lFETFeatureAlignmentFeature nfets;
+       int nnum;
+}lFETFeatureAlignmentSpherePointInfo;
+
+
+typedef struct lFETFeatureAlignmentImageInfo{
+    char imagename[256];
+    lFETFeatureAlignmentFeature* fets;
+    double lenmax;
+    double lenmin;
+       double lensum;
+    int posmax;
+    int posmin;
+       int flagLX;
+       double interAngle;
+       lFETFeatureAlignmentCoord norm, base, yoys;
+       //lFETFeatureAlignmentImageInfoClass group;
+       lFETFeatureAlignmentSpherePointInfo* spt[2];
+       int next;
+}lFETFeatureAlignmentImageInfo;
+
+typedef struct lFETFeatureAlignmentImageQSInfo{
+       lFETFeatureAlignmentFeature** corset;
+       int** cset;
+       int* lxseries;
+       int* nseries;
+       int seed;
+       int num;
+}lFETFeatureAlignmentImageQSInfo;
+
+typedef struct lFETFeatureAlignmentSphereSquareInfo{
+       lFETFeatureAlignmentSpherePointInfo** sq;
+       int center;
+}lFETFeatureAlignmentSphereSquareInfo;
+
+typedef struct lFETFeatureAlignmentSphereInfo{
+       lFETFeatureAlignmentSphereSquareInfo sq6[2][6];
+       int curSwitch;
+       int mode;
+}lFETFeatureAlignmentSphereInfo;
+                                                                          
+typedef struct lFETFeatureAlignmentInfo{
+    lFETFeatureAlignmentImageInfo* images;
+    int imagey;
+    int imagenum;
+    double llong;
+    double lmiddle;
+       double lmiddles;
+    double lshort;
+       int ldn;
+       double srl;
+       double corave;
+       FILE* OutLOG;
+       //int groupnum[9];
+       //int groups[9];
+       int seedImage, smallImage;
+       lFETFeatureAlignmentSphereInfo sph;
+       //lFETFeatureAlignmentSpherePointInfo* spt;
+    int mode;
+}lFETFeatureAlignmentInfo;
+
+typedef struct lFETFeatureAlignment_multiselectInfo{
+       lFETFeatureAlignmentImageInfo* images;
+       double max;
+}lFETFeatureAlignment_multiselectInfo;
+
+typedef struct lFETFeatureAlignment_i11LMLXsInitInfo{
+       int lmList[10];
+       int lxList[10];
+       int pos[10][10];
+       //int rev[10][10];
+       double cvalue[10];
+       double cor[10][10][2]; 
+}lFETFeatureAlignment_i11LMLXsInitInfo;
+
+typedef struct lFETFeatureAlignment_i2LMsLXsInitInfo{
+       int ser[2][5][10];
+       int num[2];
+}lFETFeatureAlignment_i2LMsLXsInitInfo;
+
+typedef struct lFETFeatureAlignment_i1LssInitInfo{
+       lFETFeatureAlignmentImageInfo* images[10];
+       int** angle[10];
+       int** nums[10];
+       int** max;
+}lFETFeatureAlignment_i1LssInitInfo;
+
+typedef struct lFETFeatureAlignment_initmSelecterInfo{
+       int mode;
+       FILE* InA;
+       int itmax,devmax,mitmax,mdevmax;
+       lFETFeatureAlignmentInfo* faInfo;
+       lFETFeatureAlignment_multiselectInfo multi;
+       lFETFeatureAlignment_i11LMLXsInitInfo i11LMLXs;
+       lFETFeatureAlignment_i2LMsLXsInitInfo i2LMsLXs;
+       lFETFeatureAlignment_i1LssInitInfo i1Lss;
+}lFETFeatureAlignment_initmSelecterInfo;
+                       
+extern void lFETOrientationSearchByFeatureAlignment(lFETOrientationSearchByFeatureAlignmentInfo in, int mode);
+extern void lFETFeatureAlignmentSphereInit(lFETFeatureAlignmentSphereInfo* sph, int mode);
+extern void lFETFeatureAlignmentSphereDevide(lFETFeatureAlignmentSphereInfo* sph);
+extern void lFETFeatureAlignmentSphereDegenerate(lFETFeatureAlignmentSphereInfo* sph);
+extern void lFETFeatureAlignmentSphereRandDisturb(lFETFeatureAlignmentSphereInfo* sph);
+extern void lFETFeatureAlignmentSphereFeatureSet(lFETFeatureAlignmentInfo* info);
+extern int lFETFeatureAlignmentSphereRefGenerate(lFETFeatureAlignmentInfo* in, lFETFeatureAlignmentImageInfo* out);
+extern void lFETFeatureAlignmentInitSet_i2PCA(lFETFeatureAlignmentInfo* info);
+extern void lFETFeatureAlignmentInitSet_i1L(lFETFeatureAlignmentInfo* info);
+extern void lFETFeatureAlignmentInitSet_i1Ls(lFETFeatureAlignmentInfo* info, int target);
+extern void lFETFeatureAlignmentInitPreSet_i1Lss(lFETFeatureAlignmentInfo* info, lFETFeatureAlignment_i1LssInitInfo* out, int target);
+extern void lFETFeatureAlignmentInitSet_i1Lss(lFETFeatureAlignmentInfo* info, lFETFeatureAlignment_i1LssInitInfo* out, int mode);
+extern void lFETFeatureAlignmentInitPreSet_i2LMsLXs(lFETFeatureAlignmentInfo* info, lFETFeatureAlignment_i2LMsLXsInitInfo* initInfo);
+extern void lFETFeatureAlignmentInitSet_i2LMsLXs(lFETFeatureAlignmentInfo* info, lFETFeatureAlignment_i2LMsLXsInitInfo* initInfo, int targetM, int targetS);
+extern void lFETFeatureAlignmentInitSet_i2LM(lFETFeatureAlignmentInfo* info);
+extern void lFETFeatureAlignmentInitSet_i21LMLX(lFETFeatureAlignmentInfo* info);
+extern void lFETFeatureAlignmentInitSet_random(lFETFeatureAlignmentInfo* info);
+extern void lFETFeatureAlignmentInitSet_i2LXs(lFETFeatureAlignmentInfo* info, int target);
+extern void lFETFeatureAlignmentInitPreSet_i11LMLXs(lFETFeatureAlignmentInfo* info, lFETFeatureAlignment_i11LMLXsInitInfo* out);
+extern void lFETFeatureAlignmentInitSet_i11LMLXs(lFETFeatureAlignmentInfo* info, lFETFeatureAlignment_i11LMLXsInitInfo* initInfo, int target);
+extern void lFETFAfeatureAdd(lFETFeatureAlignmentFeature* b, lFETFeatureAlignmentFeature* a);
+extern void lFETFAfeaturecpy1(lFETFeatureAlignmentFeature* b, double* a);
+extern double lFETFAcalcCoordDistance(lFETFeatureAlignmentCoord a, lFETFeatureAlignmentCoord b);
+extern lFETFeatureAlignmentCoord lFETFAcalcCoordSum(lFETFeatureAlignmentCoord a, lFETFeatureAlignmentCoord b, lFETFeatureAlignmentCoord c, lFETFeatureAlignmentCoord d);
+extern void lFATFAcoordcpy2(lFETFeatureAlignmentCoord* a, double* b, int mode);
+extern void lFETFAcoordcpy1(lFETFeatureAlignmentCoord* b, double* a, int mode);
+extern void lFETFAvectorProduct1(double* a, double* b, double* ans);
diff --git a/include/lFETmapOrientationSearchBySimultaneousFitting.h b/include/lFETmapOrientationSearchBySimultaneousFitting.h
new file mode 100644 (file)
index 0000000..ca43eb4
--- /dev/null
@@ -0,0 +1,99 @@
+/*
+# lFETmapOrientationSearchBySimultaneousFitting.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lFETmapOrientationSearchBySimultaneousFitting.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+
+#include<stdio.h>
+#include<math.h>
+#include "mrcImage.h"
+#include<stdlib.h>
+//#include "lEvaluateCorrelationMapwithCommonLine.h"  
+
+
+typedef struct lFETmapOrientationSearchBySimultaneousFittingInfo{
+       FILE* InML;
+       FILE* InNL;
+       FILE* InCL;
+       int PM;
+       int PN;
+       int filesN,filesM;
+       double PDT;
+       FILE* ChkPtOut;
+       FILE* Out;
+       int mode;
+}lFETmapOrientationSearchBySimultaneousFittingInfo;
+
+typedef struct FETmapPeakTable{
+    int*** table;
+       int filesN,filesM;
+       int PN;
+       int PM;
+    int mode;
+}FETmapPeakTable;
+                                  
+typedef struct lFETmapPeakDetectAndTableMakeInfo{
+       FILE* InML;
+       FILE* InNL;
+       int PM;
+       int PN;
+       int filesN,filesM;
+       double PDT;
+       FETmapPeakTable* tableP; 
+       int mode;
+}lFETmapPeakDetectAndTableMakeInfo;
+
+typedef struct FETCoreTriad{
+       int triad[6];
+       int matchPosi[3][2];
+       double angles[3][2][3];
+       double* anglesOf4th;
+       double matchingLevel;
+       int matchFlag;
+       int filesN;
+       int mode;
+}FETCoreTriad;
+
+typedef struct lFETmapCoreTriadGenerateInfo{
+       FILE* InCL;
+       int filesN;
+       //FETmapPeakTable* tableP;
+       FETCoreTriad* CList;
+       int mode;
+}lFETmapCoreTriadGenerateInfo;
+
+typedef struct RadonSpaceSimultaneousFittingParameters{
+       double** table;
+       int mode;
+}RadonSpaceSimultaneousFittingParameters;
+
+typedef struct lRadonSpaceSimultaneousFittingInfo{
+       RadonSpaceSimultaneousFittingParameters* paras;
+       FETmapPeakTable* tableP;
+       int cycleMaxR;
+       int cycleMax;
+       int cycleMaxS;
+       int coreNum;
+       int mode;
+}lRadonSpaceSimultaneousFittingInfo;
+
+/*typedef struct lFETmapPeak{
+       lmrcSCMEpeakDetectPixelInfo* peak;
+       int mode;
+}lFETmapPeak;*/
+
+extern void lFETmapOrientationSearchBySimultaneousFitting(lFETmapOrientationSearchBySimultaneousFittingInfo info, int mode); 
+extern void lFETmapPeakDetectAndTableMake(lFETmapPeakDetectAndTableMakeInfo* info, int mode);
+extern void lFETmapCoreTriadGenerate(FETmapPeakTable* Table, lFETmapCoreTriadGenerateInfo* info, int mode);
+extern int lFETBestCoreSearch(FETmapPeakTable* , FETCoreTriad* , int , int );
+extern void lFETpointRotation(double axis[3], double point[3], double theta, double* ans, int mode);
+extern double lFET4thMatching(FETmapPeakTable* , FETCoreTriad* , int , int , int , int , int );
+extern void lRadonSpaceSimultaneousFitting(lRadonSpaceSimultaneousFittingInfo* info, int mode);
+extern void lRadonSpaceSimultaneousFittingC(FETmapPeakTable* tableP,RadonSpaceSimultaneousFittingParameters* paras, int* sortN, int mode);
+extern int lRadonSpaceSimultaneousFittingCoreSearch(FETmapPeakTable* tableP,RadonSpaceSimultaneousFittingParameters* paras, int* rS[10], int mode);
diff --git a/include/lFETsmallMapSetCreate_forSimultaneousMinimization.h b/include/lFETsmallMapSetCreate_forSimultaneousMinimization.h
new file mode 100644 (file)
index 0000000..6b12aec
--- /dev/null
@@ -0,0 +1,38 @@
+/*
+# lFETsmallMapSetCreate_forSimultaneousMinimization.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lFETsmallMapSetCreate_forSimultaneousMinimization.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+
+#include<stdio.h>
+#include<math.h>
+#include "mrcImage.h"
+#include<stdlib.h>
+
+
+typedef struct lFETsmallMapSetCreate_forSimultaneousMinimizationInfo{
+       FILE* InML;
+       mrcImage* Out;
+       int ss;
+       int sr;
+       int mode;
+}lFETsmallMapSetCreate_forSimultaneousMinimizationInfo;
+
+extern void lFETsmallMapSetCreate_forSimultaneousMinimization(lFETsmallMapSetCreate_forSimultaneousMinimizationInfo info, int mode);
+
+
+
+
+
+
+
+
+
+
+
diff --git a/include/lFRET.h b/include/lFRET.h
new file mode 100644 (file)
index 0000000..b71ae0e
--- /dev/null
@@ -0,0 +1,116 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lFRET.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lFRET.h 
+#%Z% Attention
+#%Z%
+*/
+#include "mrcImage.h"
+
+/* constant begin */
+/* Point Status Mode */ 
+typedef enum energyTransferPointMode {
+    energyTransferPointModeFixedPoint   = 0,
+    energyTransferPointModeUnfixedPoint = 1,
+    energyTransferPointModeConnect      = 2,     
+    energyTransferPointModeFar          = 3,   
+    energyTransferPointModeNear         = 4     
+} energyTransferPointMode;
+/* constant end */
+
+/* struct begin */
+typedef double energyTransferParaTypeReal;
+
+/* Point Information */
+typedef struct energyTransferPoint {
+    int nID;
+    char* ID;
+    energyTransferPointMode mode;
+    energyTransferParaTypeReal x;
+    energyTransferParaTypeReal y;
+    energyTransferParaTypeReal z;
+    energyTransferParaTypeReal rootB;
+    energyTransferParaTypeReal radius; 
+    energyTransferParaTypeReal probability;
+} energyTransferPoint;
+
+/* Connection Information */
+typedef struct energyTransferConnect {
+    int nID;
+    char* ID;
+    int nID2;
+    char* ID2;
+    energyTransferPointMode    mode;   
+    energyTransferParaTypeReal length; 
+    energyTransferParaTypeReal estimatedLength;
+    energyTransferParaTypeReal rootB;
+    energyTransferParaTypeReal estimatedRootB;
+} energyTransferConnect;
+
+/* Energy Transfer Data */ 
+typedef struct energyTransferData {
+    int numFix; 
+    energyTransferPoint* fix;
+    int numUnfix;
+    energyTransferPoint* unfix;
+    int numConnect;
+    energyTransferConnect* connect;
+    energyTransferParaTypeReal rms;
+    energyTransferParaTypeReal rmsRootB;
+} energyTransferData;
+
+/* Information for model checking */
+typedef struct lenergyTransferModelCheckInfo {
+    int flagStartingDelta;
+    energyTransferParaTypeReal sdx;
+    energyTransferParaTypeReal sdy;
+    energyTransferParaTypeReal sdz;
+    energyTransferParaTypeReal neglect;
+    int excludedPDB;
+       int restriction;
+    int iter;
+} lenergyTransferModelCheckInfo;
+
+/* struct end */
+
+/* prototype begin */
+extern void lenergyTransferModelCheck(
+               energyTransferData* src, 
+               mrcImage* unfix, mrcImage* fix,
+        lenergyTransferModelCheckInfo linfo, int mode);
+
+extern void lenergyTransferModelExpectedFRET(
+               FILE* fpt, 
+               energyTransferData* src, 
+               mrcImage* unfix,
+        lenergyTransferModelCheckInfo linfo, 
+               int mode);
+
+extern void lenergyTransferModelExpectedFRET2(
+               FILE* fpt, 
+               energyTransferData* src, 
+               mrcImage* unfix,
+        lenergyTransferModelCheckInfo linfo, 
+               int mode);
+
+extern void lenergyTransferModelExpectedFRETSD(
+               FILE* fpt, 
+               energyTransferData* src, 
+               mrcImage* unfix,
+        lenergyTransferModelCheckInfo linfo, 
+               int mode);
+
+extern void energyTransferDataWrite(
+               energyTransferData* dst, 
+               FILE* fpt, 
+               int lmode);
+extern void energyTransferDataRead(
+               energyTransferData* dst, 
+               FILE* fpt, 
+               int lmode);
+
+/* prototype end */
diff --git a/include/larray2mrc.h b/include/larray2mrc.h
new file mode 100644 (file)
index 0000000..41d0f91
--- /dev/null
@@ -0,0 +1,51 @@
+/*
+# larray2mrc.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : larray2mrc.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef LARRAY2MRC_H
+#define LARRAY2MRC_H 
+
+#include <stdio.h>
+
+#define DEBUG
+#include "genUtil.h"
+#include "Array.h"
+#include "mrcImage.h"
+
+/* constant begin */
+
+
+/* constant end */
+
+/* struct begin */
+
+typedef struct larray2mrcInfo {
+       int   mrcMode;
+       mrcImageParaTypeReal mrcLength;
+} larray2mrcInfo;
+
+/* struct end */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* prototype begin */
+
+extern void larray2mrc(mrcImage* out, Array a, larray2mrcInfo* linfo, int mode);
+
+/* prototype end */
+
+#ifdef __cplusplus
+};
+#endif
+
+#endif  /* LARRAY2MRC_H */ 
+
diff --git a/include/lastigmatismDetection.h b/include/lastigmatismDetection.h
new file mode 100644 (file)
index 0000000..78332e0
--- /dev/null
@@ -0,0 +1,26 @@
+#ifndef ASTIGMATISM_DETECTION_H
+#define ASTIGMATISM_DETECTION_H
+/*
+# lastigmatismDetection.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lastigmatismDetection.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#include "ctfInfo.h" 
+
+typedef struct lastigmatismDetectionInfo  {
+       double* defocus; 
+       int             sectionSize;
+}  lastigmatismDetectionInfo;
+
+
+/* prototype begin */
+extern void lastigmatismDetection(ctfInfo* results, lastigmatismDetectionInfo linfo, int mode);
+
+/* prototype end */
+#endif
diff --git a/include/lctfDetermination.h b/include/lctfDetermination.h
new file mode 100644 (file)
index 0000000..321d765
--- /dev/null
@@ -0,0 +1,55 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lctfDetermination ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lctfDetermination 
+#%Z% Attention
+#%Z%
+*/
+#ifndef LCTF_DETERMINATION_H
+#define LCTF_DETERMINATION_H
+
+#include "mrcImage.h"
+#include "ctfInfo.h"
+
+typedef struct lctfDetermineInfo {
+       ctfInfo initial;
+
+       long    ThonRing;       
+       /* For Astigmatism */
+       int     flagAstigmatism;
+       int    section;
+
+       int    degree;
+       double step;
+       double max;
+       double min;
+       float  firstRingDefocus;
+       float  IntensityMin;
+       float  IntensityMax;
+       float* noise;
+} lctfDetermineInfo;
+
+
+/* prototype begin */
+
+extern void lctfDetermine(ctfInfo* result, ctfInfo* var, mrcImage* mrc, lctfDetermineInfo* linfo, long mode);
+extern void lctfDtermmineUsage(FILE* fpt);
+
+extern void lctfDeterminationbyMinMaxMethods(ctfInfo* res, mrcImage* mrc, ctfInfo* ini, long mode);
+extern void lctfDeterminationbyFittingMethods(ctfInfo* res, ctfInfo* var, mrcImage* mrc, ctfInfo* ini, long mode);
+extern void angularDistributionFunctionOfSignalAndNoise(float x, float p[], float* y, float dyda[], int na);
+extern void lctfDeterminationbyDifferentialMethods(ctfInfo* res, mrcImage* mrc, ctfInfo* ini,long* ThonRing, long mode);
+extern void lctfDeterminationbyCovarianceMethods(ctfInfo* res, mrcImage* mrc, ctfInfo* ini,long* ThonRing, long mode);
+extern void lctfDeterminationbyMixMethods(ctfInfo* res, mrcImage* mrc, ctfInfo* ini, long* ThonRing,long mode);
+extern void lctfDeterminationbyMinSquareMethods(ctfInfo* res, mrcImage* mrc, ctfInfo* ini,long* ThonRing,lctfDetermineInfo* linfo,floatVector* defocus,floatVector* Eres ,long mode);
+extern void lctfDeterminationbyMinSquareMethodsWithAcomp(ctfInfo* res, mrcImage* mrc, ctfInfo* ini,long* ThonRing,lctfDetermineInfo* linfo,floatVector* defocus,floatVector* Eres ,long mode);
+extern double lctfDeterminationByTangent(ctfInfo* res, mrcImage* mrc, ctfInfo* ini,lctfDetermineInfo* linfo,floatVector* defocus,floatVector* Eres, long mode);
+extern void EnvelopeDetermine(ctfInfo* res, mrcImage* mrc, ctfInfo* ini,lctfDetermineInfo* linfo,floatVector* defocus,floatVector* Eres, long mode);
+/* prototype end */
+
+#endif /* LCTF_DETERMINATION_H */
+
diff --git a/include/lhf2000LenzCurrent.h b/include/lhf2000LenzCurrent.h
new file mode 100644 (file)
index 0000000..b2d38ba
--- /dev/null
@@ -0,0 +1,36 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lhf2000LenzCurrent.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lhf2000LenzCurrent.h 
+#%Z% Attention
+#%Z%
+*/
+
+#include "hf2000.h"
+
+/* struct begin */
+typedef struct hf2000LenzCurrent {
+       hf2000ParaTypeInteger D;
+       hf2000ParaTypeReal    A;
+} hf2000LenzCurrent;
+
+typedef struct lhf2000LenzCurrentInfo {
+       hf2000LenzCurrent C1;
+       hf2000LenzCurrent C2;
+       hf2000LenzCurrent C3;
+       hf2000LenzCurrent OBJ;
+       hf2000LenzCurrent I1;
+       hf2000LenzCurrent I2;
+       hf2000LenzCurrent P1;
+       hf2000LenzCurrent P2;
+} lhf2000LenzCurrentInfo;
+/* struct end */
+
+/* prototype begin */
+extern void  lhf2000LenzCurrentGet(hf2000Info* hf2000, lhf2000LenzCurrentInfo* linfo, int mode);
+extern hf2000LenzCurrent lhf2000LenzCurrentGet0(hf2000Info* hf2000, char* s, int mode);
+/* prototype end */
diff --git a/include/lhf2000SpecimenPosition.h b/include/lhf2000SpecimenPosition.h
new file mode 100644 (file)
index 0000000..248e58e
--- /dev/null
@@ -0,0 +1,27 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lhf2000SepecimenPosition.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lhf2000SepecimenPosition.h 
+#%Z% Attention
+#%Z%
+*/
+#include "hf2000.h"
+/* struct begin  */
+
+typedef struct lhf2000SepecimenPositionInfo {
+       float  x;
+       int   ix;
+       float  y;
+       int   iy;
+} lhf2000SpecimenPositionInfo;
+
+/* struct end */
+
+/* prototype begin */
+extern void lhf2000SpecimenPositionGet(hf2000Info* hf2000, lhf2000SpecimenPositionInfo* linfo, int mode);
+extern void lhf2000SpecimenPositionSet(hf2000Info* hf2000, lhf2000SpecimenPositionInfo* linfo, int mode);
+/* prototype end */
diff --git a/include/llDataPVM.h b/include/llDataPVM.h
new file mode 100644 (file)
index 0000000..0587504
--- /dev/null
@@ -0,0 +1,26 @@
+#ifndef LL_DATA_PVM_H
+#define LL_DATA_PVM_H
+
+#include <stdio.h>
+#include <math.h>
+#include "llData.h"
+#include "genUtil.h"
+
+#ifdef PVM
+#include "pvm3.h" 
+
+/* prototype begin */
+
+/* llData Sender */
+extern void llDataSendByPVM(llData* ll, int tid, int mode);
+extern void llDataOneLLSendByPVM(oneLLData* LL, int tid, int mode);
+
+/* llData Reciever */
+extern void llDataRecieveByPVM(llData* ll, int tid, int mode); 
+extern void llDataOneLLRecieveByPVM(oneLLData* LL, int tid, int mode);
+
+/* prototype end */
+
+#endif
+
+#endif /* LL_DATA_PVM_H */
diff --git a/include/lll2ltlg.h b/include/lll2ltlg.h
new file mode 100644 (file)
index 0000000..3e0f271
--- /dev/null
@@ -0,0 +1,71 @@
+#ifndef LLL2LTLG_H
+#define LLL2LTLG_H
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#undef DEBUG
+#include "genUtil.h"
+#include "Memory.h"
+#include "String.h"
+#include "File.h"
+#include "llData.h"
+#include "ltlgData.h"
+
+/* struct begin */
+typedef struct lll2ltlgInfo {
+       /* Input File */
+               long flagIn;
+               char* In;
+               FILE* fptIn; 
+
+       /* Output File */
+       char* Out;
+       FILE* fptOut;
+
+       /* Config File */
+               long flagconfigFile;
+               char* configFile;
+       FILE* fptconfigFile;
+
+       /* Title for ltlg */
+               long flagTitle;
+               char* Title;
+
+       /* The Number of Layer Line */
+       long flagllMax;
+       long llMax;
+
+       /* The inverse of deltaR: unit Angstrom */
+       long flagdelRInv;
+       float delRInv;
+
+       /* The inverse of Rmax:  unix Angstrom */
+       long flagRMaxInv;
+       float RMaxInv;
+
+       /* Delta r : unit Angstrom */
+       long flagdelr;
+       float delr;
+
+       /* rmax : unit Angstrom */
+       long flagrMax;
+       float rMax;
+
+           long mode;
+} lll2ltlgInfo;
+/* struct end */
+
+/* prototype begin */
+extern void ll2ltlgConfigFileRead(lll2ltlgInfo* linfo, FILE* fpt);
+
+
+/* Fourier Bessel Transform */
+extern void lll2ltlg(ltlgData* out, llData* in, lll2ltlgInfo* linfo);
+extern void emBessel(ltlgData* ltlg, llData* ll);
+extern ltlgDataParaTypeReal Bessel0(ltlgDataParaTypeReal x0);
+extern ltlgDataParaTypeReal Bessel1(ltlgDataParaTypeReal x0);
+/* prototype end */
+
+#endif /* LLL2LTLG_H */
diff --git a/include/lllDataAxisSearch.h b/include/lllDataAxisSearch.h
new file mode 100644 (file)
index 0000000..9c754bc
--- /dev/null
@@ -0,0 +1,38 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataAxisSearch.h ver %I%
+#%Z% Created by tacyas
+#%Z%
+#%Z% Usage : lllDataAxisSearch.h 
+#%Z% Attention
+#%Z%
+*/
+
+#ifndef LLLDATA_AXIS_SEARCH_H 
+#define LLLDATA_AXIS_SEARCH_H
+
+#include "llData.h"
+#include "lllDataFit.h"
+
+/* constant begin */  
+#define lllDataAxisSearchModeSearchProcess                (0xf0)
+#define lllDataAxisSearchModeSearchProcessPrint           (0x10)
+#define lllDataAxisSearchModeSearchProcessSameLLStructure (0x20)
+
+#define lllDataAxisSearchModeSearchAndAverage   (0x0f)
+#define lllDataAxisSearchModeNoSearch           (0x01)
+#define lllDataAxisSearchModeQ2Search           (0x02)
+/* constant end */
+
+/* prototype begin */
+extern void lllDataAxisSearch(llData* ll1, llData* ll2, llDataFittedParam* p, long mode);
+extern void lllDataAxisSearchWithFile(llData* ll1, llData* ll2, llDataFittedParam* p, char* paramFileName, long mode);
+
+extern void lllDataAxisSearch2(llData* ll1, llData* ll2, llDataFittedParam* p, long mode);
+
+extern void lllDataAxisSearchAndAverage(llData* avg, llData* nea, llData* far, llDataFittedParam* p, long mode);
+/* prototype end */
+
+#endif /* LLLDATA_AXIS_SEARCH_H */
diff --git a/include/lllDataCTF.h b/include/lllDataCTF.h
new file mode 100644 (file)
index 0000000..0665599
--- /dev/null
@@ -0,0 +1,26 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataCTF.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllDataCTF.h 
+#%Z% Attention
+#%Z%
+*/
+#ifndef LLLDATA_CTF_H
+#define LLLDATA_CTF_H
+
+#include <stdio.h>
+#include <stdlib.h>
+#include "llData.h"
+#include "ctfInfo.h"
+
+/* prototype begin */
+
+extern void lllDataCTFObservation(llData* ll, ctfInfo ctf, int mode);
+
+/* prototype end */
+
+#endif /* LLLDATA_CTF_H */
diff --git a/include/lllDataCTFCompensate.h b/include/lllDataCTFCompensate.h
new file mode 100644 (file)
index 0000000..2368850
--- /dev/null
@@ -0,0 +1,41 @@
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "llData.h"
+#include "String.h"
+#include "genUtil.h"
+#include "ctfInfo.h"
+#define SECTION_MARK " \t,"
+#include "File.h"
+
+/* struct begin */  
+typedef struct lllDataCTFCompensateInfo {
+               long flagIn;
+               char* In;
+               FILE* fptIn;
+               long flagIn1;
+               char* In1;
+               FILE* fptIn1;
+               long flagIn2;
+               FILE* fptIn2;
+               long flagOut;
+               char* Out;
+               FILE* fptOut;
+               long flagtruePitch;
+               float truePitch;
+               long flagmode;
+               long mode;
+               long flagconfigFile;
+               FILE* fptconfigFile;
+} lllDataCTFCompensateInfo;
+/* struct end */
+
+/* prototype begin */
+extern void llDataCTFSet(llData* llInfo, FILE* fpt);
+extern void llDataCTFSet2(llData* llInfo, FILE* fpt);
+
+extern void configFileRead(FILE* fpt, lllDataCTFCompensateInfo* linfo);
+extern void configFileUsage(FILE* fpt);
+
+/* prototype end */
diff --git a/include/lllDataCTFCompensation.h b/include/lllDataCTFCompensation.h
new file mode 100644 (file)
index 0000000..0c07275
--- /dev/null
@@ -0,0 +1,56 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataCTFCompensation.h ver %I%
+#%Z% Created by tacyas
+#%Z%
+#%Z% Usage : lllDataMultiCTFCompensation.h 
+#%Z% Attention
+#%Z%
+*/
+
+#include "llData.h"
+#include "lllDataFit.h"
+#include "lllDataFitAndAverage.h"
+#include "ctfInfo.h"
+
+/* Multi CTF Compensation */
+
+/* constant begin */
+typedef enum lllDataMultiCTFCompensationCompensationMode {
+       lllDataMultiCTFCompensationModeAbsCTFperSQRCTF = 0,
+       lllDataMultiCTFCompensationModeCTFperSQRCTF    = 1
+} lllDataMultiCTFCompensationCompensationMode;
+
+typedef enum lllDataMultiCTFCompensationMode {
+       lllDataMultiCTFCompensationModeOnlyAverage   = 0,
+       lllDataMultiCTFCompensationModeCTFCompensate = 1
+} lllDataMultiCTFCompensationMode;
+/* constant end */
+
+/* struct begin */
+
+/* Single CTF Compensation */ 
+typedef struct lllDataSingleCTFCompensationInfo {
+       int     flagllCTF;
+       llData  llCTF;
+       ctfInfo CTF;
+}  lllDataSingleCTFCompensationInfo;
+
+/* struct end */
+
+/* prototype begin */
+extern void lllDataMultiCTFCompensation(llData* avg, llData* out, 
+                                                                               llData* In,  llData ref,
+                                                                               llDataFittedParam* paraFit,
+                                                                               lllDataFitAndAverageInfo linfo, 
+                                                                               lllDataMultiCTFCompensationMode mode);
+
+extern void lllDataMultiCTFCompensationModePrint(FILE* fpt);
+
+extern void lllDataSingleCTFCompensation(llData* out, llData* in, 
+                       lllDataSingleCTFCompensationInfo linfo,
+                       int mode);  
+
+/* prototype end */
diff --git a/include/lllDataCompare.h b/include/lllDataCompare.h
new file mode 100644 (file)
index 0000000..d94193e
--- /dev/null
@@ -0,0 +1,30 @@
+#ifndef LLLDATA_COMPARE_H 
+#define LLLDATA_COMPARE_H 
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>                  
+
+#include "genUtil.h"
+#include "llData.h"
+
+/* struct begin */
+
+typedef struct lllDataCompareInfo {
+       int FilamentNumber;
+       double ratio;
+       double OriginReflection;
+       double OtherReflection;
+       int mode;
+} lllDataCompareInfo;
+
+/* struct end */
+
+/* prototype begin */
+extern void lllDataCompare(lllDataIntensityInformation* data,
+                                                  lllDataCompareInfo* linfo, 
+                                                       int mode);
+/* prototype end */
+
+#endif /* LLLDATA_COMPARE_H */
diff --git a/include/lllDataContributionCalcDifferentN.h b/include/lllDataContributionCalcDifferentN.h
new file mode 100644 (file)
index 0000000..6492fc0
--- /dev/null
@@ -0,0 +1,23 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataMergeDifferentN ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllDatarMaxLimit
+#%Z% Attention
+#%Z%
+*/
+#ifndef LLLDATA_CONTRIBUTION_CALC_H
+#define LLLDATA_CONTRIBUTION_CALC_H
+
+#include "llData.h"
+#include "genUtil.h"
+
+/* prototype begin */
+extern void lllDataContributionCalcDifferentN(llData* dst, llData* src, int mode);
+
+/* prototype end */
+
+#endif /* LLLDATA_CONTRIBUTION_CALC_H */
diff --git a/include/lllDataDifferenceCalc.h b/include/lllDataDifferenceCalc.h
new file mode 100644 (file)
index 0000000..83e463d
--- /dev/null
@@ -0,0 +1,59 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataDifferenceCalc.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllDataDifferenceCalc.h 
+#%Z% Attention
+#%Z%
+*/
+#include "llData.h"
+#include "Vector.h"
+
+/* struct begin */
+
+typedef struct lllDataDifferenceCalcInfo {
+       double A; /* test = A*ref */
+} lllDataDifferenceCalcInfo;
+
+/* struct end */
+
+/* prototype begin */
+/* 
+       dst = 1/A * test(a) - ref(b) 
+       
+       mode: 0 : allocation of dst
+                 1 : no allocation of dst
+*/
+extern double lllDataDifferenceCalcWithNormalizing(
+       llData* dst, 
+       llData* newa, 
+       llData* a, 
+       llData* b, 
+       lllDataDifferenceCalcInfo* linfo, 
+       int mode);
+
+/* 
+       dst = a - b 
+
+       mode: 0 : allocation of dst
+                 1 : no allocation of dst
+*/
+
+extern double lllDataDifferenceCalc(
+       llData* dst, 
+       llData* a, 
+       llData* b, 
+       int mode);
+
+/* P-Value */
+extern double lllDataDifferencePValueCalc(llData* a, llData* b, int mode);
+extern double lllDataDifferencePValueCalc2(floatVector* fv, llData* a, llData* b, int mode);
+
+/* R-Value */
+extern double lllDataDifferenceRValueCalc(llData* a, llData* b, int mode);
+
+/* prototype end */
+
diff --git a/include/lllDataEquatorAdd.h b/include/lllDataEquatorAdd.h
new file mode 100644 (file)
index 0000000..224d576
--- /dev/null
@@ -0,0 +1,17 @@
+#ifndef LLLDATA_EQUATOR_ADD_H
+#define LLLDATA_EQUATOR_ADD_H
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>                  
+
+#include "genUtil.h"
+#include "llData.h"
+
+/* prototype begin */
+
+extern void lllDataEquatorAdd(llData* out, llData* in, int mode);
+
+/* prototype end */
+#endif /* LLLDATA_EQUATOR_ADD_H */
diff --git a/include/lllDataExtract.h b/include/lllDataExtract.h
new file mode 100644 (file)
index 0000000..e3d08b5
--- /dev/null
@@ -0,0 +1,25 @@
+#ifndef LLLDATA_EXTRACT_H
+#define LLLDATA_EXTRACT_H
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>                  
+
+#include "genUtil.h"
+#include "llData.h"
+
+/* struct begin */
+typedef struct lllDataExtractInfo {
+       int n;
+       int l;
+} lllDataExtractInfo;
+/* struct end */
+
+/* prototype begin */
+
+extern void lllDataExtract(llData* out, llData* in, lllDataExtractInfo* info, int mode);
+
+/* prototype end */
+
+#endif /* LLLDATA_EXTRACT_H */
diff --git a/include/lllDataFit.h b/include/lllDataFit.h
new file mode 100644 (file)
index 0000000..af78652
--- /dev/null
@@ -0,0 +1,162 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataFit.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllDataFit.h 
+#%Z% Attention
+#%Z%
+*/
+#ifndef LL_DATA_FIT_H
+#define LL_DATA_FIT_H
+
+#include "llData.h"
+#include "ctfInfo.h"
+
+/* contant begin */
+#define lllDataFitResidual (0x0f) 
+#define PVALUE_MODE  (0x01)
+#define QVALUE_MODE  (0x02)
+#define RVALUE_MODE  (0x04)
+#define Q2VALUE_MODE (0x08)
+
+#define lllDataFitFitProcess                (0xf0)
+#define lllDataFitFitProcessPrint           (0x10)
+#define lllDataFitFitProcessSameLLStructure (0x20)
+#define lllDataFitFitProcessMergedLL        (0x40)
+/* contant end */
+
+/* struct begin */
+typedef struct llDataParaTypeRegion {
+       llDataParaTypeReal Max;
+       llDataParaTypeReal Min;
+    llDataParaTypeReal Delta;
+       llDataParaTypeReal Value;
+} llDataParaTypeRegion;
+
+typedef struct llDataParamToFit {
+    /* IntraMolecule Fit Parameters */
+    llDataParaTypeRegion Omega;
+    llDataParaTypeRegion x;   /* Axis Position */
+    /* InterMolecule Fit Parameters */
+    llDataParaTypeRegion  z;
+    llDataParaTypeRegion  r;
+    llDataParaTypeRegion  phi;
+    llDataPole            Pole;
+    /* Residue */
+    llDataParaTypeReal   R;
+    /* Control Parameters */
+    llDataParaTypeInteger flagResolution;
+    llDataParaTypeReal    Resolution;
+
+       int                        flagCTF;
+       int                ctfCompensationMode;
+       ctfInfo            CTF;
+       llDataParaTypeReal ctfCutOff;
+       int                flagllCTF;
+       llData             llCTF;
+
+       int flagLLTable;
+       llDataParaTypeInteger* llTable; 
+} llDataParamToFit;
+
+typedef struct llDataFittedParam {
+    llDataParamToFit   Para;
+       llDataParamToFit   PPara;
+    llDataParamToFit   QPara;
+    llDataParamToFit   Q2Para;
+    llDataParamToFit   RPara;
+       llDataParamToFit   PParaInv;
+    llDataParamToFit   QParaInv;
+    llDataParamToFit   Q2ParaInv;
+    llDataParamToFit   RParaInv;
+       
+       int flagFitFile;
+       char* fitFileName;
+       char* fitFileNameAnti;
+} llDataFittedParam;
+/* struct end */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* prototype begin */
+
+/* in lllDataFit.c */
+extern void lllDataFitOfSeparatedLL(llData* ll1, llDataBoth* ll2, llDataFittedParam* p, long mode);
+
+/* in lllDataFit.c */
+extern void lllDataFit(llData* ll1, llData* ll2, llDataFittedParam* p, long mode);
+extern void lllDataFitWithFile(llData* ll1, llData* ll2, llDataFittedParam* p, char* paramFileName, long mode);
+
+/* in lllDataFit2.c */
+extern void lllDataFit2(llData* ll1, llData* ll2, llDataFittedParam* p, long mode);
+
+/* in lllDataFitOut.c */
+extern void lllDataFitParamOutput(FILE* fpt, char* ref, char* dat, llDataFittedParam* para, long mode);
+
+
+/* in lllDataAxisSearch.c */
+extern void lllDataAxisSearch(llData* ll1, llData* ll2, llDataFittedParam* p, long mode);
+extern void lllDataAxisSearchWithFile(llData* ll1, llData* ll2, llDataFittedParam* p, char* paramFileName, long mode);
+
+/* in lllDataAxisSearch2.c */
+extern void lllDataAxisSearch2(llData* ll1, llData* ll2, llDataFittedParam* p, long mode);
+
+/* in llDataPhaseShift.c */
+extern void lllDataPhaseShiftInverse(llData* ll1, llData* ll2, llDataFittedParam* p);
+extern void lllDataPhaseShift(llData* ll1, llData* ll2, llDataFittedParam* p);
+extern void lllDataPhaseShiftIntra(llData* ll1, llData* ll2, llDataFittedParam* p);
+extern void lllDataPhaseShiftInter(llData* ll1, llData* ll2, llDataFittedParam* p);
+
+/* in lllDataFitUtil.c */
+extern void lllDataFitllCTFSet(llData* ll, ctfInfo ctf, int mode);
+extern void lllDataNewFittedParameterSet(llDataParamToFit* param);
+extern void lllDataNewFittedParameterSet0(llDataParaTypeRegion* param);
+extern void lllDataFittedParameterSet(llDataParamToFit* param, llDataParamToFit* range);
+extern void lllDataFittedParameterSet0(llDataParaTypeRegion* param, llDataParaTypeRegion* region);
+extern void lllDataFittedParameterFree(llDataFittedParam* param);
+extern void lllDataFittedParameterFree0(llDataParamToFit* param);
+
+/* prototype end */
+
+/* struct begin */
+typedef struct lllDataFitPVMInfo {
+       int* tids;
+       int  numTask;
+} lllDataFitPVMInfo;
+/* struct end */
+
+/* prototype begin */
+
+extern void lllDataFitServerStart(lllDataFitPVMInfo* linfo, FILE* fpt, int numTask);
+extern void lllDataFitServerEnd(lllDataFitPVMInfo linfo);
+
+extern void lllDataFitPVMStart(llData* llref, llData* llp, llDataFittedParam* p, int tid, long mode);
+extern void lllDataFitPVMEnd(llData* llref, llData* llp, llDataFittedParam* p, int tid, long mode);
+extern void lllDataFitPVMServer();
+extern void lllDataFitWithFilePVMStart(llData* llref, llData* llp, llDataFittedParam* p, char* filename, int tid, long mode);
+extern void lllDataFitWithFilePVMEnd(llData* llref, llData* llp, llDataFittedParam* p, char* filename, int tid, long mode);
+
+extern void lllDataFittedParamSendByPVM(llDataFittedParam* p, int tid, int mode);
+extern void lllDataFittedParamRecieveByPVM(llDataFittedParam* p, int tid, int mode);
+extern void lllDataParamToFitSendByPVM(llDataParamToFit* p, int tid, int mode);
+extern void lllDataParamToFitSendByPVM2(llDataParamToFit* p, int tid, int mode);
+extern void lllDataParamToFitRecieveByPVM(llDataParamToFit* p, int tid, int mode);
+extern void lllDataParamToFitRecieveByPVM2(llDataParamToFit* p, int tid, int mode);
+
+
+extern void lllDataParaTypeRegionSendByPVM(llDataParaTypeRegion* p, int tid, int mode);
+extern void lllDataParaTypeRegionRecieveByPVM(llDataParaTypeRegion* p, int tid, int mode);
+
+/* prototype end */
+
+#ifdef __cplusplus
+};
+#endif
+
+#endif /* LL_DATA_FIT_H */ 
+
diff --git a/include/lllDataFitAndAverage.h b/include/lllDataFitAndAverage.h
new file mode 100644 (file)
index 0000000..d1762c1
--- /dev/null
@@ -0,0 +1,64 @@
+#ifndef LLLDATA_FIT_AND_AVERAGE_INFO
+#define LLLDATA_FIT_AND_AVERAGE_INFO
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataFitAndAverage.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllDataFitAndAverage.h 
+#%Z% Attention
+#%Z%
+*/
+
+#include "llData.h"
+#include "lllDataFit.h"
+#include "ctfInfo.h"
+
+/* struct begin */
+typedef struct lllDataFitAndAverageInfo {
+       int nFile;
+       int times;
+       int flagOutParam2;
+       char** OutParam2;
+       char** In;
+
+       int flagAveragingWithoutAntiPole;
+       int flagAveragingBelowThreshold;
+       float threshold; 
+
+       FILE* fptLog;
+
+       int flagCTF;
+       int ctfMode;
+       ctfInfo* CTF;
+       
+       int flagWeight;
+       llDataParaTypeReal* weight;
+
+       double noise;
+
+       int mode;
+
+       int flagPVM;
+       lllDataFitPVMInfo vPVM;
+} lllDataFitAndAverageInfo;
+
+/* struct end */
+
+/* prototype begin */
+extern void lllDataFitAndAverage(llData* llAve, llData* llOut, 
+                                 llData* llIn,  llData llRef, 
+                                                                llDataFittedParam* paraFit, 
+                                                                lllDataFitAndAverageInfo info);
+
+
+extern void lllDataAverage(llData* llAve, llData* llOut, 
+                                 llData* llIn,  llData llRef, 
+                                                                llDataFittedParam* paraFit, 
+                                                                lllDataFitAndAverageInfo info,
+                                                                int mode);
+/* prototype end */
+
+#endif /* LLLDATA_FIT_AND_AVERAGE_INFO */
diff --git a/include/lllDataFitParamInverse.h b/include/lllDataFitParamInverse.h
new file mode 100644 (file)
index 0000000..d57ccd8
--- /dev/null
@@ -0,0 +1,15 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataFitParamInverse ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllDataFitParamInverse 
+#%Z% Attention
+#%Z%
+*/
+
+/* prototype begin */
+extern void lllDataFitParamInverse(llDataFittedParam* dst, llDataFittedParam* src);
+/* prototype end */
diff --git a/include/lllDataLowPassFiltering.h b/include/lllDataLowPassFiltering.h
new file mode 100644 (file)
index 0000000..96cc6c6
--- /dev/null
@@ -0,0 +1,29 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataLowPassFiltering.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllDataLowPassFiltering.h 
+#%Z% Attention
+#%Z%
+*/
+#ifndef LLLDATA_LOW_PASS_FILTERING_H
+#define LLLDATA_LOW_PASS_FILTERING_H
+
+#include "llData.h"
+
+/* constant begin */
+typedef enum lllDataLowPassFilteringMode {
+       lllDataLowPassFilteringModeSameMemorySize  = 0,
+       lllDataLowPassFilteringModeSavedMemorySize = 1
+} lllDataLowPassFilteringMode;
+/* contant end */
+
+/* prototype begin */
+extern void lllDataLowPassFiltering(llData* ll, double RMax, int mode);
+extern void lllDataRadialLowPassFiltering(llData* ll, double RRMax, int mode);
+/* prototype end   */ 
+
+#endif /* LLLDATA_LOW_PASS_FILTERING_H */
diff --git a/include/lllDataMergeDifferentN.h b/include/lllDataMergeDifferentN.h
new file mode 100644 (file)
index 0000000..e96dc81
--- /dev/null
@@ -0,0 +1,19 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataMergeDifferentN ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllDatarMaxLimit
+#%Z% Attention
+#%Z%
+*/
+#include "llData.h"
+#include "genUtil.h"
+
+/* prototype begin */
+
+extern void lllDataMergeDifferentN(llDataBoth* dst, llDataBoth* src, int mode);
+/* protetype end */
diff --git a/include/lllDataRescaling.h b/include/lllDataRescaling.h
new file mode 100644 (file)
index 0000000..7ea878c
--- /dev/null
@@ -0,0 +1,27 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDataRescaling.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllDataRescaling.h 
+#%Z% Attention
+#%Z%
+*/
+#include "llData.h"
+
+/* struct begin */
+
+typedef struct lllDataRescalingInfo {
+     llDataParaTypeReal delBR;
+        llDataParaTypeReal rScale;
+} lllDataRescalingInfo;
+
+/* struct end */
+
+/* prototype begin */
+
+extern void lllDataRescaling(llData* llOut, llData* llIn, lllDataRescalingInfo linfo, long mode);
+
+/* prototype end */
diff --git a/include/lllDatarMaxLimit.h b/include/lllDatarMaxLimit.h
new file mode 100644 (file)
index 0000000..584679d
--- /dev/null
@@ -0,0 +1,47 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllDatarMaxLimit ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllDatarMaxLimit
+#%Z% Attention
+#%Z%
+*/
+
+#ifndef LLLDATA_RMAX_LIMIT_H
+#define LLLDATA_RMAX_LIMIT_H
+
+#include "llData.h"
+#include "genUtil.h"
+
+/* constant begin */
+
+typedef enum lllDatarMaxLimitMode {
+       lllDatarMaxLimitModeNoMemorySave = 0 ,
+       lllDatarMaxLimitModeMemorySave   = 1
+} lllDatarMaxLimitMode;
+/* constant end */
+
+/* struct begin */
+
+typedef struct lllDatarMaxLimitInfo {
+       float rMax;
+       int   flagrMaxMin;
+       float rMaxMin;
+} lllDatarMaxLimitInfo;
+/* struct end */
+
+/* prototype begin */
+extern void
+lllDatarMaxLimit(llData* llIn, lllDatarMaxLimitInfo linfo, int mode);
+
+extern inline int 
+lllDatarMaxLimitCheck(float R, int n, float rMax);
+
+extern inline float 
+lllDatarMaxLimitWeight(float R, int n, float rMax, float rMaxMin);
+/* prototype end */
+
+#endif /* LLLDATA_RMAX_LIMIT_H */
diff --git a/include/lllExtract.h b/include/lllExtract.h
new file mode 100644 (file)
index 0000000..8395ce2
--- /dev/null
@@ -0,0 +1,93 @@
+#ifndef LLL_EXTRACT_INFO_H
+#define LLL_EXTRACT_INFO_H
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lllExtract.h ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : lllExtract.h 
+#%Z% Attention
+#%Z%
+*/
+
+#include "mrcImage.h"
+#include "llData.h"
+#include "lllDataFit.h"
+#include "lllDatarMaxLimit.h"
+
+/* struct begin */
+typedef struct lllExtractInfo {
+    char* Title;
+    float xStep;
+    float yStep;
+    float MaxX;
+    float MaxY;
+    float RotationAngle;
+    float Omega;
+    float Shear;
+    long ievery; 
+    float axl;
+    float ayl;
+    float xShift; 
+    long llMax;
+    llDataParaTypeReal delRInv; /* [A] */
+    long flagOutputInfo; /* for Compati */
+    long* n;
+    long* nn;   /* number of diffenent n along l*/
+    long** ns;  /* diffenent n's along l*/
+    long* l;
+    float* Y;
+    float* leftMin;
+    float* leftMax;
+    float* rightMin;
+    float* rightMax;
+    float* weight; 
+       llDataParaTypeReal truePitch;   
+       lllDatarMaxLimitInfo rMax;
+       llDataParaTypeReal   RMax;
+       llDataParaTypeReal RMaxFirst;
+
+       int flagMagnitudeLimit;
+} lllExtractInfo;
+/* struct end */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+/* prototype begin */
+
+/* in lllExtract.c */
+extern void lllExtract(llData* nea, llData* far, mrcImage* in, lllExtractInfo* info);
+
+
+extern void lllExtractWithSeparationUsingFittingParameter(llData* dst, llDataBoth* src, 
+               llDataFittedParam* param, 
+               int number, 
+               lllExtractInfo* info, 
+               int mode);
+
+extern void lllExtractWithSeparation(llDataBoth* dst, llDataBoth* src, 
+               lllExtractInfo* info, int mode);
+extern void lllExtractWithWeightedSeparation(llDataBoth* dst, llDataBoth* src, 
+               llData* weight, lllExtractInfo* info, int mode);
+
+extern void lllDatarMaxLimitForSeparation(llData* ll, float rMax, 
+               lllExtractInfo* linfo, long mode);
+
+extern void lllDataSeparationInfoRead(lllExtractInfo* linfo, mrcImage* mrc, FILE* fpt);
+extern void lllDataSeparationInfoFileFormat(FILE* fpt);
+
+
+extern void lllDataSeparationInfoTruePitchSet(lllExtractInfo* linfo, llDataParaTypeReal truePitch); 
+extern void lllDataSeparationInfoDelRInvSet(lllExtractInfo* linfo, llDataParaTypeReal DelRInv);
+extern void lllDataSeparationInfoxShiftSet(lllExtractInfo* linfo, llDataParaTypeReal xShift);
+extern void lllExtractWeightSetFollowingllExtractInfo(llData* dst, lllExtractInfo* info, float weight, int mode);
+/* prototype end */
+
+#ifdef __cplusplus
+};
+#endif
+
+#endif
diff --git a/include/lllExtractCtfinfFileCreate.h b/include/lllExtractCtfinfFileCreate.h
new file mode 100644 (file)
index 0000000..408a5f9
--- /dev/null
@@ -0,0 +1,29 @@
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>                  
+
+#define UNDEBUG
+#include "genUtil.h"
+#include "ctfInfo.h"
+#include "ctfZeroPoint.h"
+
+/* struct begin */
+typedef struct infoDataList {
+       float FirstZero;
+       long flagFirstZero;
+       char* Out;
+       FILE* fptOut;
+} infoDataList;
+/* struct end */
+
+/* prototype begin */
+extern void llExtractCtfinfFileCreateI(infoDataList* linfo,
+                                                                          ctfInfo* CTFInfo,
+                                                                      ctfInfoZeroPoint* CTFInfoZeroPoint);
+
+extern void llExtractCtfinfFileCreateII(infoDataList* linfo,
+                                                                               ctfInfo* CTFInfo);
+
+
+/* prototype end */
diff --git a/include/lllExtractdYEstimate.h b/include/lllExtractdYEstimate.h
new file mode 100644 (file)
index 0000000..abe1d69
--- /dev/null
@@ -0,0 +1,17 @@
+#ifndef LLL_EXTRACT_DY_ESTIMATE_INFO_H
+#define LLL_EXTRACT_DY_ESTIMATE_INFO_H
+
+/* struct begin */
+typedef struct lllExtractdYEstimateInfo{
+       float truePitch;
+       float deltadY;
+       float mag;
+       float PixelSize;
+} lllExtractdYEstimateInfo;
+/* struct end */
+
+/* prototype begin */
+extern int lllExtractdYEstimate(mrcImage* in, lllExtractdYEstimateInfo* dYinfo);
+/* prototype end */
+
+#endif /* LLL_EXTRACT_DY_ESTIMATE_INFO_H */
diff --git a/include/lltlg2mrc.h b/include/lltlg2mrc.h
new file mode 100644 (file)
index 0000000..df6ad28
--- /dev/null
@@ -0,0 +1,64 @@
+#ifndef LLTLG_2_MRC_H
+#define LLTLG_2_MRC_H
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#define DEBUG
+#include "genUtil.h"
+#include "File.h"
+#include "String.h"
+#include "ltlgData.h"
+#include "mrcImage.h"
+
+/* struct begin */
+typedef struct lltlg2mrcInfo {
+           long flagIn;
+               char* In;
+       FILE* fptIn;
+       long flagOut;
+       char* Out;
+       FILE* fptOut;
+       long flagconfigFile;
+       FILE* fptconfigFile;
+       long flagTitle;
+       char* Title;
+       long flagdelta;
+       float delta;
+           long flagRepeatDistance;
+               float RepeatDistance;
+       long flagrMax;
+       float rMax;
+       long flagphiStart;
+       float phiStart;
+       long flagzMin;
+       float zMin;
+       long flagzMax;
+       float zMax;
+       long flagdeltaz;
+       float deltaz;
+       long flagWeightOf0thLayer;
+       float WeightOf0thLayer;
+       long flagLayer;
+               FILE* fptLayer;
+       long f99;
+       long flagCUT;
+       float CUT;
+       long flagMean;
+       float Mean;
+       long flagSigma;
+       float Sigma;
+       long Inverse;
+       long notInteractive;
+       long AntiPole;
+       long mode;
+} lltlg2mrcInfo;
+/* struct end */
+
+/* prototype begin */
+extern void lltlg2mrc(ltlgData* ltlg, mrcImage* mrc, lltlg2mrcInfo* linfo);
+extern void ltlg2mrcConfigFileRead(lltlg2mrcInfo* linfo, FILE* fpt);
+/* prototype end */
+
+#endif /* LLTLG_2_MRC_H */
diff --git a/include/lmolvie.h b/include/lmolvie.h
new file mode 100644 (file)
index 0000000..80051ef
--- /dev/null
@@ -0,0 +1,193 @@
+/*
+# lmolvie.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lmolvie.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef LMOLVIE_H
+#define LMOLVIE_H
+
+#include <GL/glut.h>
+#include "pdbFile.h"
+#include "Contour.h"
+
+#undef  IDLE_FUNCTION
+#define KEYBOARD_FUNCTION 
+#define MOUSE_FUNCTION 
+#define MOTION_FUNCTION 
+#define PASSIVEMOTION_FUNCTION 
+
+//int mainwindow, parallelwindow;
+
+typedef struct molvieInfo {
+    long flagRedirect;
+
+    long flagIn;
+    char* In;
+    FILE* fptIn;
+    
+    long flagOut;
+    char* Out;
+    FILE* fptOut;
+    
+    long flagconfigFile;
+    char* configFile;
+    FILE* fptconfigFile;
+    
+    long flagmode;
+    long mode;
+    
+} molvieInfo;
+
+typedef struct cameraInfo {
+       GLdouble Fovy;
+       GLdouble Aspect;
+       GLdouble ClipNear;
+       GLdouble ClipFar;
+       GLdouble Eye[3];
+       GLdouble Centre[3];
+       GLdouble Up[3];
+} cameraInfo;
+
+typedef enum displayMode{
+       none=0,
+       atom=1,
+       stick=2,
+       serial=3,
+       residue=4,
+       temp=5,
+       sticktemp=6,
+       stickresidue=7
+}displayMode;
+
+typedef enum operationMode {
+       normal=0,
+       drive=1,
+       parallel=2,
+       surface=3,
+       multi=4,
+       coaster=5
+} operationMode;
+
+typedef struct Coord {
+       GLfloat x;
+       GLfloat y;
+       GLfloat z;
+} Coord; 
+
+extern void lmolviePDBread(FILE* fptIn);
+extern pdbFile* get_pdb(void);
+extern void lmolvieInitNormal(void);
+extern void lmolvieIdleTest(void);
+extern void lmolvieIdleNormal(void);
+extern void lmolvieDisplayTest(void);
+extern void lmolvieDisplayNormal(void);
+//extern void viewerDisplay(void);
+extern void lmolvieReshapeNormal(int width, int height);
+extern void myCameraRotateY(GLdouble angle);
+extern void lmolvieMouse(int button, int state, int x, int y);
+extern void lmolvieMouseMotion(int x, int y);
+extern void lmolvieMousePassiveMotion(int x, int y);
+extern void lmolvieMouseDrive(int button, int state, int x, int y);
+extern void lmolvieMouseMotionDrive(int x, int y);
+extern void lmolvieMousePassiveMotionDrive(int x, int y);
+extern void lmolvieMouseParallel(int button, int state, int x, int y);
+extern void lmolvieMouseMotionParallel(int x, int y);
+extern void lmolvieMousePassiveMotionParallel(int x, int y);
+extern void lmolvieMouseMulti(int button, int state, int x, int y);
+extern void lmolvieMouseMotionMulti(int x, int y);
+extern void lmolvieMousePassiveMotionMulti(int x, int y);
+extern void lmolvieKeyboard(unsigned char pushkey, int x, int y);
+extern void lmolvieKeyboardNormal(unsigned char pushkey, int x, int y);
+extern void lmolvieKeyboardDrive(unsigned char pushkey, int x, int y);
+extern void lmolvieKeyboardParallel(unsigned char pushkey, int x, int y);
+extern void lmolvieKeyboardSurface(unsigned char pushkey, int x, int y);
+//extern void moveKeyboard(int movekey, int x, int y);
+//extern void moveKeyboard0(int movekey, int x, int y);
+
+extern void lmolvieInitParallel(void);
+extern void lmolvieDisplayParallel(void);
+extern void lmolvieReshapeParallel(int width, int height);
+
+extern operationMode operationModeGet(void);
+extern void operationModeSet(operationMode);
+
+extern void myCameraRotateX(GLdouble angle);        
+extern void myCameraRotateY(GLdouble angle);        
+extern void myCameraRotateZ(GLdouble angle);
+extern void myCameraEyeRotateX(GLdouble angle);
+extern void myCameraEyeRotateY(GLdouble angle);
+extern void myCameraTranslateX(GLdouble pan);        
+extern void myCameraTranslateY(GLdouble pan);        
+extern void myCameraTranslateZ(GLdouble pan); 
+//extern void setMyCamera(pdbCenter pdbCenter, GLfloat h);
+extern void resetMyCamera();
+extern cameraInfo* getMyCamera(void);
+extern void upCalc();
+extern void moveMyCamera(double movedistance);
+
+//extern pdbCenter getpdbCenter(int returnID);
+//extern void putpdbCenter(pdbFile* putpdbfile);
+
+extern void lmolvieLightSet(void);
+extern GLfloat* get_LightPos(int index);
+
+//extern elementSwitch get_elementSwitch(int ID);
+//extern void put_elementSwitch(int ID, char atom);
+//extern void DrawAtom(void);
+
+extern void monoSound(float amplitude, float Hz);
+extern void lmolvieVoice(void);
+
+extern void drawContour(contourLinesSet* contour);
+
+extern void scaleBarSwitch();
+
+//molvieViewer
+extern void lmolvieViewerIdle(void);
+extern void lmolvieViewerKeyboard(unsigned char pushkey, int x, int y);
+extern void lmolvieViewerSpecial(int pushkey, int x, int y);
+extern void lmolvieViewerMouse(int button, int state, int x, int y);
+extern void lmolvieViewerMouseMotion(int x, int y);
+extern void lmolvieViewerMousePassiveMotion(int x, int y);
+extern void lmolvieViewerDisplay(void);
+
+//molvieMrcViewer
+extern void lmolvieMrcViewerKeyboard(unsigned char pushkey, int x, int y);
+extern void lmolvieMrcViewerMouse(int button, int state, int x, int y);
+extern void lmolvieMrcViewerMouseMotion(int x, int y);
+extern void lmolvieMrcViewerMousePassiveMotion(int x, int y);
+extern void lmolvieMrcViewerDisplay(void);
+
+//molvieProjection
+extern void lmolvieProjectionKeyboard(unsigned char pushkey, int x, int y);
+extern void lmolvieProjectionMouse(int button, int state, int x, int y);
+extern void lmolvieProjectionMouseMotion(int x, int y);
+extern void lmolvieProjectionMousePassiveMotion(int x, int y);
+
+//molvieDock
+extern void lmolvieDockKeyboard(unsigned char pushkey, int x, int y);
+//extern void newPDBload(pdbFile* loadpdb);
+extern void displayMultiPDB1();
+extern void lmolvieDockDisplay(void);
+
+//molvieFlight
+extern void lmolvieFlightKeyboard(unsigned char pushkey, int x, int y);
+extern void lmolvieFlightDisplay(void);
+extern void lmolvieFlightIdle(void);
+
+//molvieTest
+extern void lmolvieTest(void);
+extern GLboolean myDisplayListMakeAtom(void);
+
+extern void setDriveMyCamera();
+extern void resetDriveMyCamera();
+extern void setCameraCentreTag(int tag);
+
+
+#endif /* LMOLVIE_H */
diff --git a/include/lmolvieProteinStatus.h b/include/lmolvieProteinStatus.h
new file mode 100644 (file)
index 0000000..57991d8
--- /dev/null
@@ -0,0 +1,67 @@
+/*
+# lmolvieProteinStatus.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lmolvieProteinStatus.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#include "pdbFile.h"
+
+typedef struct pdbCenter{
+       GLfloat xCenter;
+       GLfloat yCenter;
+       GLfloat zCenter;
+       GLfloat xMax;
+       GLfloat xMin;
+       GLfloat xWidth;
+       GLfloat yMax;
+       GLfloat yMin;
+       GLfloat yWidth;
+       GLfloat zMax;
+       GLfloat zMin;
+       GLfloat zWidth;
+}pdbCenter;
+
+typedef struct elementSwitch{
+       GLint elementC;
+       GLint elementO;
+       GLint elementN;
+       GLint elementS;
+       GLint elementP;
+       GLint elementH;
+       GLint elementFE;
+}elementSwitch;
+
+typedef struct ProteinStatus {
+       pdbCenter __pdbCenter;
+       elementSwitch __elementSwitch;
+       GLint spin_x;
+       GLint spin_y;
+       GLint spin_z;
+       GLfloat move_x;
+       GLfloat move_y;
+//     GLfloat move_z;
+} ProteinStatus;
+
+extern void lmolvieDisplayNormal(void);
+extern pdbCenter getpdbCenter(int returnID);
+extern void putpdbCenter(pdbFile* putpdbfile);
+extern void proteinInit();
+extern elementSwitch get_elementSwitch(int ID);
+extern void put_elementSwitch(int ID, char atom);
+extern int getSpin_x(int pdbID);
+extern int getSpin_y(int pdbID);
+extern int getSpin_z(int pdbID);
+extern void proteinRotateX(int pan, int pdbID);
+extern void proteinRotateY(int pan, int pdbID);
+extern void proteinRotateZ(int pan, int pdbID);
+extern int getMultiMoveX(int pdbID);
+extern int getMultiMoveY(int pdbID);
+extern void MultiMoveX(GLint move);
+extern void MultiMoveY(GLint move);
+extern void saveproteinStatus(ProteinStatus saveprotein);
+extern void texture();
diff --git a/include/lmrc2Dto3D.h b/include/lmrc2Dto3D.h
new file mode 100644 (file)
index 0000000..4e3477d
--- /dev/null
@@ -0,0 +1,76 @@
+#ifndef LMRC2DTO3D_H
+#define LMRC2DTO3D_H
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lmrc2Dto3D.h ver %I%
+#%Z% Created by tacyas 
+#%Z%
+#%Z% Usage : mrc2Dto3D
+#%Z% Attention
+#%Z%
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>                  
+
+#undef DEBUG
+#include "genUtil.h"
+#include "Memory.h"
+#include "String.h"
+#include "mrcImage.h"
+#include "Matrix3D.h"
+#include "lmrcImageRhoFiltering.h"
+#include "lmrcImageMultiplying.h"
+#include "lmrc3Dto2D.h"
+#include "ctfInfo.h"
+
+
+typedef enum lmrc2Dto3DMode {
+       mrc2Dto3DModeSimpleBackProjection = 0,
+       mrc2Dto3DModeFilteredBackProjection = 1,
+       mrc2Dto3DModeWeightedBackProjection = 2
+} lmrc2Dto3DMode;
+
+typedef struct lmrc2Dto3DInfo {
+       // for Many Files 
+       int    inFileNum; 
+       char** inFileList;
+       mrcImageTailer* Tailer;
+
+       // For Control  
+       long flagDouble;
+       long singleTiltMode;
+       lmrcImageRhoFiltering1Mode singleFilterMode;
+       long mode;
+       int  InterpolationMode;
+       long flagPlusXrot;
+       double Rmax;
+       mrcImage* CounterForWeight;
+       lmrcImageRhoFilteringInfo rhoInfo;
+       lmrcImageRhoFiltering1Info rhoInfo1;
+
+       // Size
+       int flagOutputSize;
+       int Nx;
+       int Ny;
+       int Nz;
+} lmrc2Dto3DInfo;
+
+
+typedef struct lmrc2Dto3DSIRTInfo {
+       lmrc3Dto2DInfo l3Dto2DInfo;
+
+       ctfInfo ctfInfo;
+       int maxIter;
+       double rms;
+       double lambda;
+} lmrc2Dto3DSIRTInfo;
+
+extern void lmrc2Dto3D(mrcImage* Out, mrcImage* in, lmrc2Dto3DInfo* linfo, long mode);
+extern void lmrc2Dto3DSimpleBackProjectionForEach(mrcImage* Out, mrcImage* prj, lmrc2Dto3DInfo* linfo, Matrix3D Matrix, long mode);
+extern void lmrc2Dto3DFilteredBackProjectionForEach(mrcImage* Out, mrcImage* prj, lmrc2Dto3DInfo* linfo, Matrix3D Matrix, long mode);
+extern void lmrc2Dto3DSIRT(mrcImage* Out, mrcImage* in, lmrc2Dto3DInfo* linfo, lmrc2Dto3DSIRTInfo* llinfo, long mode);
+#endif /* LMRC2DTO3D_H */
diff --git a/include/lmrc3Dto2D.h b/include/lmrc3Dto2D.h
new file mode 100644 (file)
index 0000000..992ed19
--- /dev/null
@@ -0,0 +1,87 @@
+#ifndef LMRC3DTO2D_H
+#define LMRC3DTO2D_H
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% lmrc3Dto2D.h ver %I%
+#%Z% Created by tacyas
+#%Z%
+#%Z% Usage : mrc3Dto2D
+#%Z% Attention
+#%Z%
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>                  
+#undef DEBUG
+#include "genUtil.h"
+#include "Matrix3D.h"
+#include "Vector.h"
+#include "mrcImage.h"
+#include "lmrc3Dto2D.h"
+
+typedef enum lmrc3Dto2DObjectAreaMode {
+       lmrc3D2DObjectAreaModeCubic=0,
+       lmrc3D2DObjectAreaModeGlobular=1
+} lmrc3Dto2DObjectAreaMode;
+
+typedef struct lmrc3Dto2DInfo {
+       /* Rot1 */
+       double Rot1Start;
+       double Rot1End;
+       double Rot1Delta;
+       int    nRot1;
+
+       /* Rot2 */
+       double Rot2Start;
+       double Rot2End;
+       double Rot2Delta;
+       int    nRot2;
+
+       /* Rot3 */
+       double Rot3Start;
+       double Rot3End;
+       double Rot3Delta;
+       int    nRot3;
+
+       /* EulerAngleMode*/
+       char   EulerAngleMode[5];
+
+       /* InterpolationMode */
+       int InterpolationMode;
+
+       /* */
+       lmrc3Dto2DObjectAreaMode AreaMode; 
+
+       /* PVM */
+       int flagPVM;    
+
+       /* fileListInformation */
+       int flagFileList;
+       char* filenamePrefix;
+       char* filenameSuffix;
+       char* filenameNumberFormat; 
+} lmrc3Dto2DInfo;
+
+typedef struct lmrc3Dto2DSingleInfo {
+       /* Section */
+       int section;
+       /* Init */
+       int flagInit;
+
+} lmrc3Dto2DSingleInfo;
+
+extern void lmrcImage3Dto2D(mrcImage* out, mrcImage* in, lmrc3Dto2DInfo* linfo, int mode);
+extern void lmrcImage3Dto2DFollowingTailer(mrcImage* out, mrcImage* in, mrcImage* ref, lmrc3Dto2DInfo* linfo, int mode);
+extern void lmrcImage3Dto2DSingle(mrcImage* out, mrcImage* in, 
+       char Mat[4], 
+       double Rot1, 
+       double Rot2,
+       double Rot3, 
+       lmrc3Dto2DInfo* linfo, 
+       lmrc3Dto2DSingleInfo* llinfo, 
+       int mode);
+
+#endif /* LMRC2DTO3D_H */
diff --git a/include/lmrcFSInfoScatteringAngularDistributionAverageSection.h b/include/lmrcFSInfoScatteringAngularDistributionAverageSection.h
new file mode 100644 (file)
index 0000000..d3c2f6b
--- /dev/null
@@ -0,0 +1,21 @@
+/*
+# lmrcFSInfoScatteringAngularDistributionAverageSection.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lmrcFSInfoScatteringAngularDistributionAverageSection.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+
+#ifndef MRC_FS_AVERAGE_SECTION_H
+#define MRC_FS_AVERAGE_SECTION_H
+
+#include "mrcImage.h"
+#include "Vector.h"
+
+extern floatVector* lmrcFSInfoScatteringAngularDistributionAverageSection(mrcImage* fft, double startAngle,double endAngle);
+
+#endif
diff --git a/include/lmrcImage3DPad.h b/include/lmrcImage3DPad.h
new file mode 100644 (file)
index 0000000..03acad9
--- /dev/null
@@ -0,0 +1,66 @@
+/*
+# lmrcImage3DPad.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lmrcImage3DPad.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef LMRCIMGAGE3D_H 
+#define LMRCIMGAGE3D_H  
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>                  
+
+#define DEBUG
+#include "genUtil.h"
+#include "mrcImage.h"
+
+/* constant begin */
+
+/* constant end */
+
+/* struct begin */
+
+typedef struct lmrcImage3DPadInfo {
+       int Nx;
+       int Ny;
+       int Nz;
+
+       double w;
+
+       int flagv;
+       double v;
+
+       int flagr;
+       float rmax;
+
+       int flagFloating;
+} lmrcImage3DPadInfo;
+
+/* struct end */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* prototype begin */
+
+void lmrcImage3DPadfilament(mrcImage* out ,mrcImage* in , lmrcImage3DPadInfo linfo, int mode );
+double lmrcImage3DPadfilamentCalcavr(mrcImage* in ,double rmax);
+double lmrcImage3DPadCalcavr(mrcImage* in ,double rmax);
+void lmrcImage3DPad(mrcImage* out, mrcImage* in, lmrcImage3DPadInfo linfo, int mode);
+
+/* prototype end */
+
+#ifdef __cplusplus
+};
+#endif
+
+#endif  /* LMRCIMGAGE3D_H */ 
+
diff --git a/include/lmrcImageDeconvolution.h b/include/lmrcImageDeconvolution.h
new file mode 100644 (file)
index 0000000..e380022
--- /dev/null
@@ -0,0 +1,88 @@
+/*
+# lmrcImageDeconvolution.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lmrcImageDeconvolution.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef LMRCIMAGE_DECONVOLUTON_H 
+#define LMRCIMAGE_DECONVOLUTON_H 
+
+#include <stdio.h>
+#include "mrcImage.h" 
+#include "lmrcImage3DPad.h" 
+#include "lmrcImageMultiplying.h" 
+#include "lmrcImageSubtractionCalc.h" 
+#include "lmrcImageDensityNormalizationByImage.h"
+#include "lmrcImageSigmaCalculate.h"
+#include "lmrcImageAddValue.h"
+
+/* constant begin */
+
+
+/* constant end */
+
+/* struct begin */
+
+typedef enum lmrcImageDeconvolutionInfoMode {
+       lmrcImageDeconvolutoinInfoModeNoConvolution  = 0,
+    lmrcImageDeconvolutoinInfoModePhaseFlipping  = 1,
+       lmrcImageDeconvolutoinInfoModeCTFMultiplying = 2,
+       lmrcImageDeconvolutoinInfoModeInverseFilter  = 3,
+       lmrcImageDeconvolutoinInfoModeWienerFilter   = 4,
+       lmrcImageDeconvolutoinInfoModePhaseFlippingCTFWeighted = 5,
+       lmrcImageDeconvolutoinInfoModeInverseFilterNoPhaseFlipping = 6,
+       lmrcImageDeconvolutoinInfoModeWienerFilterNoPhaseFlipping  = 7,
+       lmrcImageDeconvolutoinInfoModeWienerFilterRDependent       = 8,
+       lmrcImageDeconvolutoinInfoModeWienerFilterRDependentNoPhaseFlipping = 9
+} lmrcImageDeconvolutionInfoMode;
+
+typedef enum lmrcImageDeconvolutionInfoKernelCentre {
+       lmrcImageDeconvolutoinInfoKernelCentreBottomLeft = 0,
+    lmrcImageDeconvolutoinInfoKernelCentreCentre = 1
+} lmrcImageDeconvolutionInfoKernelCentre;
+
+typedef struct lmrcImageDeconvolutionInfo {
+       // Input
+       double                     thresCTF;
+       double                     NSRatio;
+       double                     NSCoeff;
+       int                Pad3DMode;    
+       lmrcImage3DPadInfo Pad3DInfo;   
+       int maxIter;
+       double minRMSD;
+       double lambda;
+       lmrcImageDeconvolutionInfoKernelCentre KernelCentreMode;
+       int norInfoMode;
+
+       // Output 
+       int Iter;
+       mrcImageInformation subInfo; 
+       lmrcImageDensityNormalizationByImageInfo norInfo;
+       mrcImage rmsd;
+} lmrcImageDeconvolutionInfo;
+
+/* struct end */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* prototype begin */
+
+extern void lmrcImageDeconvolutionModePrint(FILE* fpt);
+extern void lmrcImageDeconvolutionKernelCentrePrint(FILE* fpt);
+extern void lmrcImageDeconvolution(mrcImage* out, mrcImage* convOut, mrcImage* in, mrcImage* kernel, lmrcImageDeconvolutionInfo* linfo, int mode);
+extern void lmrcImageIterativeDeconvolution(mrcImage* out, mrcImage* convOut, mrcImage* in, mrcImage* kernel, lmrcImageDeconvolutionInfo* linfo, int mode);
+
+/* prototype end */
+
+#ifdef __cplusplus
+};
+#endif
+
+#endif  /* LMRCIMAGE_DECONVOLUTON_H */ 
diff --git a/include/lmrcImageFileListAndEulerAngleDataRead.h b/include/lmrcImageFileListAndEulerAngleDataRead.h
new file mode 100644 (file)
index 0000000..b1b05c8
--- /dev/null
@@ -0,0 +1,24 @@
+/*
+# lmrcImageFileListAndEulerAngleDataRead.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lmrcImageFileListAndEulerAngleDataRead.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+#ifndef LMRC_IMAGE_FILELISTANDEULERANGLEDATAREAD_H
+#define LMRC_IMAGE_FILELISTANDEULERANGLEDATAREAD_H
+
+#include <stdlib.h>
+#include "Memory.h" 
+#include "String.h"
+#include "mrcImage.h"
+#include "genUtil.h"
+
+/* prototype begin */
+extern void lmrcImageFileListAndEulerAngleDataRead(mrcImage* out, char** filename, int number, FILE* fptInfo, int mode);
+/* prototype end */
+
+#endif
index 1e03bbd..2c71859 100644 (file)
@@ -20,7 +20,7 @@
 /* struct begin */
 typedef enum lmrcImageMaskingInfoShape {
        lmrcImageMaskingInfoShapeCircle=0,
-       lmrcImageMaskingInfoSquare=0
+       lmrcImageMaskingInfoSquare=1
 } lmrcImageMaskingInfoShape;
 
 typedef struct lmrcImageMaskingInfo {
diff --git a/include/lmrcImageOrientationSearchBySimultaneousMinimization.h b/include/lmrcImageOrientationSearchBySimultaneousMinimization.h
new file mode 100644 (file)
index 0000000..a679405
--- /dev/null
@@ -0,0 +1,118 @@
+/*
+# lmrcImageOrientationSearchBySimultaneousMinimization.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : lmrcImageOrientationSearchBySimultaneousMinimization.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+
+#include "mrcImage.h"
+#include "Memory.h"
+#include "String.h"
+#include "genUtil.h"
+#include "lCommonLineCalculation.h"
+
+#define WORDLEN  (1024)
+#define PHIMIN   (0)
+#define PHIMAX   (2*M_PI-(M_PI/180/2))
+#define THETAMIN (0)
+#define THETAMAX (M_PI)
+#define PSIMIN   (0)
+#define PSIMAX   (2*M_PI-(M_PI/180/2))
+
+
+
+typedef struct EulerAngle {
+       char* filename;
+
+       float phi;
+       float theta;
+       float psi;
+} EulerAngle;
+
+typedef struct lmrcImageOrientationSearchBySimultaneousMinimizationInfo {
+       int    filenum;
+       char*  OutFileName;
+
+       float  dtheta;
+       float  dpsi;
+
+       int    mode;
+       int    initialrandomdata;
+       int    modeinitialdata;
+       int    ModeStartPoint;
+       int    ModeAngularArea;
+       int    ModeL;
+       int    ModeThresholdAngular;
+       int    ModeCalculationArea;
+       int    ModeFix;
+       double ThresholdCalculationArea;
+
+       char*  LogFileName;
+       char*  Log2FileName;
+       char*  mrc2dFileName;
+       char*  mrc3dFileName;
+
+       int    MaxCount;
+       char*  FileNameHeader;
+
+       EulerAngle* angle;
+} lmrcImageOrientationSearchBySimultaneousMinimizationInfo;
+
+typedef struct PlaneRotationAngle {
+       float theta;
+       float phi;
+} PlaneRotationAngle;
+
+typedef struct CommonLineData {
+       float angleRef;
+       float angleOther;
+       float angularweight;
+       int   num;
+       int   flag;
+} CommonLineData;
+
+double
+lLcalculation(lmrcImageOrientationSearchBySimultaneousMinimizationInfo* linfo, mrcImage* refOneLineFT, mrcImage* otherOneLineFT, 
+                         mrcImage* refOneLineSino, mrcImage* otherOneLineSino, CommonLineData* commonlinedata, double delU, int Num, int mode);
+
+int
+lAllCommonLineCalculation(lmrcImageOrientationSearchBySimultaneousMinimizationInfo* linfo, lCommonLineCalculationInfo* CommonLineInfo, int N,
+                          PlaneRotationAngle* planerotationAngle, CommonLineData* Workcommonlinedata, int j, int mode);
+
+int
+lJcalculation(lmrcImageOrientationSearchBySimultaneousMinimizationInfo* linfo, int mode);
+
+void
+lPlaneRotationAngleSet(lmrcImageOrientationSearchBySimultaneousMinimizationInfo* linfo, PlaneRotationAngle* planerotationAngle, int mode);
+
+void
+lAngularWeightCalculation(lmrcImageOrientationSearchBySimultaneousMinimizationInfo* linfo, CommonLineData* commonlinedata, int CommonLineNum, int mode);
+
+void
+lCommonLineDataSetInPlaneRotation(lmrcImageOrientationSearchBySimultaneousMinimizationInfo* linfo, CommonLineData* commonlinedata,
+                                  CommonLineData* commonlinedataWithPlaneRotation, int PlaneRotationNum, int CommonLineNum, int i,
+                                  int* PlaneRotationFileNum, mrcImage* ref, int mode);
+
+int
+lCommonLinesDataSet(lmrcImageOrientationSearchBySimultaneousMinimizationInfo* linfo, CommonLineData* Workcommonlinedata, CommonLineData* commonlinedata, int mode);
+
+void
+lInitialDataFileRead(lmrcImageOrientationSearchBySimultaneousMinimizationInfo* linfo, FILE* fpt, int mode);
+
+void
+lmrcImageOneLineGet(mrcImage* out, mrcImage* in, float angle, int mode);
+
+void
+lmrcImageFTOneLineGet(mrcImage* out, mrcImage* in, float angle, int mode);
+
+void
+lmrcImageOneLineFTCreate(lmrcImageOrientationSearchBySimultaneousMinimizationInfo* linfo, mrcImage* ref, mrcImage* other,
+                         mrcImage* refOneLineFT, mrcImage* otherOneLineFT, float RefAngle, float OtherAngle, int mode);
+
+double 
+lmrcImageOneLineSinogramCorrelationAdditionalWeight(mrcImage* in, mrcImage* ref, int mode);                                              
index e41b056..b5c974d 100644 (file)
@@ -23,6 +23,17 @@ typedef struct lmrcImageRhoFilteringInfo {
        int             SubSampling;
 } lmrcImageRhoFilteringInfo;
 
+typedef enum lmrcImageRhoFiltering1Mode {
+       lmrcImageRhoFilter1ModeRhoFilter  = 0,
+       lmrcImageRhoFilter1ModeRamLak     = 1,
+       lmrcImageRhoFilter1ModeSheppLogan = 2,
+       lmrcImageRhoFilter1ModeCosine     = 3
+} lmrcImageRhoFiltering1Mode;
+
+typedef struct lmrcImageRhoFiltering1Info {
+       double Rmax;
+       lmrcImageRhoFiltering1Mode filterMode;
+} lmrcImageRhoFiltering1Info;
 
 /* For double tilt mode */
 /*
@@ -34,7 +45,7 @@ typedef struct lmrcImageRhoFilteringInfo {
 extern void lmrcImageRhoFiltering2(mrcImage* out3D, mrcImage* counter, int index, Matrix3D m, lmrcImageRhoFilteringInfo* linfo, long mode);
 
 /* For single tilt mode */
-extern void lmrcImageRhoFiltering(mrcImage* out, mrcImage* in, Matrix3D m, long mode);
+extern void lmrcImageRhoFiltering(mrcImage* out, mrcImage* in, Matrix3D m, lmrcImageRhoFiltering1Info linfo, long mode);
 /* prototype end */
 
 #endif
diff --git a/include/lmrcNeuralNet.h b/include/lmrcNeuralNet.h
new file mode 100644 (file)
index 0000000..4036f94
--- /dev/null
@@ -0,0 +1,14 @@
+#ifndef LMRCNEURALNET_H
+#define LMRCNEURALNET_H
+
+#include "./NeuralNet.h"
+#include "mrcImage.h"
+
+double lmrcImageNeuralNetParticleLearning(
+       int pattern,
+       double*** weight,
+       mrcImage* in,
+       NeuralNetInfo* linfo,
+       int mode);
+
+#endif
diff --git a/include/marching_cubes.h b/include/marching_cubes.h
new file mode 100644 (file)
index 0000000..ca4068f
--- /dev/null
@@ -0,0 +1,38 @@
+/*
+# marching_cubes.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : marching_cubes.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+typedef enum vertex_type{
+       normal = 0,
+       vertex,
+       begin,
+       begin_strip,
+       end
+}vertex_type;
+
+typedef struct vertex_coord{
+       float x;
+       float y;
+       float z;
+}vertex_coord;
+
+typedef struct marching_one_vertex{
+       vertex_type type;
+       vertex_coord coord;
+
+       marching_one_vertex* next;
+       marching_one_vertex* previous;
+}marching_one_vertex;
+
+typedef struct marching_cubes{
+       marching_one_vertex* top;
+       marching_one_vertex* current;
+       marching_one_vertex* bottom;
+}marching_cubes;
diff --git a/include/molvieDefault.h b/include/molvieDefault.h
new file mode 100644 (file)
index 0000000..24647c9
--- /dev/null
@@ -0,0 +1,27 @@
+/*
+# molvieDefault.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : molvieDefault.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef MOLVIEDEFAULT_H
+#define MOLVIEDEFAULT_H
+
+#include <stdlib.h>
+#include <GL/glut.h>
+#include "lmolvie.h"
+
+#define WIN_WIDTH  (600)
+#define WIN_HEIGHT (600)
+#define WIN_POSX   (0)
+#define WIN_POSY   (0)
+#define WIN_NAME   "molvie ver. 1.00"
+
+extern int main(int argc, char* argv[]);
+
+#endif /* MOLVIEDEFAULT_H */
diff --git a/include/molvieDockDefault.h b/include/molvieDockDefault.h
new file mode 100644 (file)
index 0000000..19d22ce
--- /dev/null
@@ -0,0 +1,27 @@
+/*
+# molvieDefault.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : molvieDefault.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef MOLVIEDEFAULT_H
+#define MOLVIEDEFAULT_H
+
+#include <stdlib.h>
+#include <GL/glut.h>
+#include "lmolvie.h"
+
+#define WIN_WIDTH  (600)
+#define WIN_HEIGHT (600)
+#define WIN_POSX   (0)
+#define WIN_POSY   (0)
+#define WIN_NAME   "molvieDock ver. 1.00"
+
+extern int main(int argc, char* argv[]);
+
+#endif /* MOLVIEDEFAULT_H */
diff --git a/include/molvieFlightDefault.h b/include/molvieFlightDefault.h
new file mode 100644 (file)
index 0000000..3ae06d9
--- /dev/null
@@ -0,0 +1,27 @@
+/*
+# molvieDefault.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : molvieDefault.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef MOLVIEDEFAULT_H
+#define MOLVIEDEFAULT_H
+
+#include <stdlib.h>
+#include <GL/glut.h>
+#include "lmolvie.h"
+
+#define WIN_WIDTH  (600)
+#define WIN_HEIGHT (600)
+#define WIN_POSX   (0)
+#define WIN_POSY   (0)
+#define WIN_NAME   "molvieFlight ver. 1.00"
+
+extern int main(int argc, char* argv[]);
+
+#endif /* MOLVIEDEFAULT_H */
diff --git a/include/molvieMrcViewerDefault.h b/include/molvieMrcViewerDefault.h
new file mode 100644 (file)
index 0000000..dab64bf
--- /dev/null
@@ -0,0 +1,27 @@
+/*
+# molvieDefault.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : molvieDefault.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef MOLVIEDEFAULT_H
+#define MOLVIEDEFAULT_H
+
+#include <stdlib.h>
+#include <GL/glut.h>
+#include "lmolvie.h"
+
+#define WIN_WIDTH  (600)
+#define WIN_HEIGHT (600)
+#define WIN_POSX   (0)
+#define WIN_POSY   (0)
+#define WIN_NAME   "molvieMrcViewer ver. 1.00"
+
+extern int main(int argc, char* argv[]);
+
+#endif /* MOLVIEDEFAULT_H */
diff --git a/include/molvieProjectionDefault.h b/include/molvieProjectionDefault.h
new file mode 100644 (file)
index 0000000..98a12da
--- /dev/null
@@ -0,0 +1,34 @@
+/*
+# molvieDefault.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : molvieDefault.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef MOLVIEDEFAULT_H
+#define MOLVIEDEFAULT_H
+
+#include <stdlib.h>
+#include <GL/glut.h>
+#include "lmolvie.h"
+
+#define WIN_WIDTH  (600)
+#define WIN_HEIGHT (600)
+#define WIN_POSX   (0)
+#define WIN_POSY   (0)
+#define WIN_NAME   "molvieProjection ver. 1.00"
+
+#define SUBWIN_WIDTH  (256)
+#define SUBWIN_HEIGHT (256)
+#define SUBWIN_POSX   (610)
+#define SUBWIN_POSY   (0)
+#define SUBWIN_NAME   "Ortho"
+
+extern int main(int argc, char* argv[]);
+extern void lmolvieProjectionKeyboard(unsigned char pushkey, int x, int y);
+
+#endif /* MOLVIEDEFAULT_H */
diff --git a/include/molvieViewerDefault.h b/include/molvieViewerDefault.h
new file mode 100644 (file)
index 0000000..649d76f
--- /dev/null
@@ -0,0 +1,27 @@
+/*
+# molvieDefault.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : molvieDefault.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef MOLVIEDEFAULT_H
+#define MOLVIEDEFAULT_H
+
+#include <stdlib.h>
+#include <GL/glut.h>
+#include "lmolvie.h"
+
+#define WIN_WIDTH  (600)
+#define WIN_HEIGHT (600)
+#define WIN_POSX   (0)
+#define WIN_POSY   (0)
+#define WIN_NAME   "molvieViewer ver. 1.00"
+
+extern int main(int argc, char* argv[]);
+
+#endif /* MOLVIEDEFAULT_H */
diff --git a/include/nr2.h b/include/nr2.h
new file mode 100644 (file)
index 0000000..ccb314d
--- /dev/null
@@ -0,0 +1,97 @@
+#ifndef NR2_H
+#define NR2_H
+
+/* constant begin */
+static float maxarg1;
+static float maxarg2;
+/* constant end */
+
+/* prototype begin */
+#define FMAX(a,b) (maxarg1=(a),maxarg2=(b),(maxarg1)>(maxarg2)?(maxarg1):(maxarg2))
+#define SIGN(a,b) ((b)>0.0?fabs(a):-fabs(a))
+
+/* Utilities */
+extern void nrerror(char error_txt[]);
+extern float* vector(long nl, long nh);
+extern void free_vector(float* v, long nl, long nh);
+extern int* ivector(long nl, long nh);
+extern void free_ivector(int* v, long nl, long nh);
+extern void nrerror(char error_txt[]);
+extern float** matrix(long nrl, long nrh, long ncl, long nch);
+extern void free_matrix(float** m, long nrl, long nrh, long ncl, long nch);
+
+/* 2.1.c */
+extern void gaussj(float **a, int n, float **b, int m);
+
+/* 2.3.c LU Decomposition and Its Applications */
+extern void ludcmp(float** a, int n, int* indx, float* d);
+extern void lubksb(float** a, int n, int* indx, float b[]);
+
+
+/* 6.1 */
+extern float gammln(float xx);
+
+/* 6.2.c */
+extern float gammp(float a, float x);
+extern float gammq(float a, float x);
+extern void gser(float* gamser, float a, float x, float* gln);
+extern void gcf (float* gammcf, float a, float x, float* gln);
+extern float erff(float x);
+extern float erffc(float x);
+
+/* 6.4 */
+extern float betai(float a, float b, float x);
+extern float betacf(float a, float b, float x);
+
+
+/* 8.2.c Sorting */
+extern void sort(unsigned long n, float arr[]);
+/* 8.5.c Sorting */
+/*
+extern float select(unsigned long k, unsigned long n, float arr[]);
+*/
+extern float nrselect(unsigned long k, unsigned long n, float arr[]);
+/*
+       11.1.c
+*/
+extern void jacobi(float** a, int n, float d[], float** v, int* nrot);
+extern void eigsrt(float d[], float** v, int n);
+
+/* 13.10.c Wavelet Transforms */
+extern void wt1(float a[], unsigned long n, int isign, void (*wtstep)(float[], unsigned long, int));
+extern void daub4(float a[], unsigned long n, int isign);
+extern void pwtset(int n);
+extern void pwt(float a[], unsigned long n, int isign);
+extern void wtn(float a[], unsigned long nn[], int ndim, int isign, void (*wtstep)(float[], unsigned long, int));
+
+/* 10.1.c */
+extern void mnbrak(float* ax, float *bx, float* cx, float* fa, float* fb, float* fc, float (*func)(float));
+
+/* 10.2.c */
+extern float brent(float ax, float bx, float cx, float (*f)(float), float tol, float* xmin);
+
+/* 10.5.c */
+extern void linmin(float p[], float xi[], int n, float *fret, float (*func)(float[]));
+
+/* 10.6.c ConjugateGradientMethods */
+/*
+void frprmn()   Polak-Ribiere 
+void frprmn2()  Fletcher-Reeeves 
+*/
+extern void frprmn(float p[], int n, float ftol, int *iter, float* fret, 
+       float (*func)(float[]), void (*dfunc)(float[], float []));
+extern void frprmn2(float p[], int n, float ftol, int *iter, float* fret, 
+       float (*func)(float[]), void (*dfunc)(float[], float []));
+/* 15.2.c */
+extern void fit(float x[], float y[], int ndata, float sig[], int mwt, float* a, float* b, float* siga, float* sigb, float* chi2, float* q);
+
+/* 15.5.c */
+extern void mrqmin(float x[], float y[], float sig[], int n, float a[], int ia[], int ma, float** covar, float** alpha, float* chisq, void (*func)(float x, float p[], float* y, float dyda[], int na), float *alamda); 
+
+/* 15.7.c */
+extern void medfit(float x[], float y[], int ndata, float* a, float* b, float* abdev);
+extern float rofunc(float b);
+
+/* prototype end */
+
+#endif /* NR2_H */
diff --git a/include/powerspectraTangentLine.h b/include/powerspectraTangentLine.h
new file mode 100644 (file)
index 0000000..7fa7ddd
--- /dev/null
@@ -0,0 +1,31 @@
+/*
+# powerspectraTangentLine.h : $Revision$  
+# $Date$ 
+# Created by $Author$
+# Usage : powerspectraTangentLine.h 
+# Attention
+#   $Loccker$
+#      $State$ 
+#
+*/
+/* $Log$ */
+#ifndef POWER_SPECTRA_TANGENT_LINE_H
+#define POWER_SPECTRA_TANGENT_LINE_H
+
+#include "mrcImage.h"
+#include "ctfInfo.h"
+#include "lctfDetermination.h"
+
+/*prototype begin*/
+extern void TangentLine(floatVector* spacing, 
+               floatVector* scatter,
+               float** belowCoefficient, 
+               float** aboveCoefficient, 
+               ctfInfo* ini,
+               lctfDetermineInfo* linfo,
+               int mode); 
+
+
+/*prototype end*/
+
+#endif /*POWER_SPECTRA_TANGENT_LINE*/
diff --git a/include/tkImgFmtMRC.h b/include/tkImgFmtMRC.h
new file mode 100644 (file)
index 0000000..30e398d
--- /dev/null
@@ -0,0 +1,106 @@
+#ifndef TK_IMG_FMT_MRC_H
+#define TK_IMG_FMT_MRC_H
+
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% tkImgFmtMRC ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : tkImgFmtMRC 
+#%Z% Attention
+#%Z%
+*/
+
+#include <tk.h>
+
+#undef DEBUG
+#include "genUtil.h"
+#include "Vector.h"
+#include "Memory.h"
+#include "mrcImage.h"
+#include "lmrcFFTInfo.h"
+
+/*
+ * Define MRC, i.e. gray images and color images.
+ */
+
+/* constant begin */
+#define MRC 1
+/* constant end */
+
+
+/*
+ * The format record for the MRC file format:
+ */
+/* struct begin */
+typedef struct tkmrcInfo {
+       mrcImage mrc;
+       char*    fileName;  /* File Name to be treated */ 
+       long     flagHeader;
+       long     flagImage; /* Image Array Free or not */
+
+       long flagnz;
+       mrcImageParaTypeInteger nz;
+
+       long flagz;
+       mrcImageParaTypeReal z;
+
+       long  flagMin;
+       float Min;
+       long  flagMax;
+       float Max;
+       long  Inverse; 
+       long  flagLog;
+       long  flagPower;
+       long  flagInfo;
+       mrcImageInformation Info;
+       long  flagFSInfo;
+       mrcFSInfo FSInfo;
+       long  flagContrast;
+       float Contrast;
+
+       long    flagHist;
+       long    nhist;
+       double* histgram;
+       
+       long    flagScattering;
+       long    flagR;
+       long    flagScattering2D;
+       long    nScattering;
+       double* scattering;
+       double** scattering2D;
+       double  axis;
+       double  numDivision;
+       double* R;
+
+       long flagProjX;
+       mrcImage projX;
+       long flagProjY;
+       mrcImage projY;
+
+       long flagSectX;
+       mrcImage sectX;
+       long flagSectY;
+       mrcImage sectY;
+} tkmrcInfo;
+/* struct end */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* prototype begin */
+extern int tkmrcInfoCmdSet(Tcl_Interp*  interp); 
+extern int tkmrcInfoSetCmd(ClientData clientData, Tcl_Interp* interp, int argc, CONST char* argv[]);
+extern int tkmrcInfoGetCmd(ClientData clientData, Tcl_Interp* interp, int argc, CONST char* argv[]);
+extern Tk_PhotoImageFormat tkImgFmtMRC;
+
+/* prototype end */
+
+#ifdef __cplusplus
+};
+#endif
+#endif /* */
+
diff --git a/include/tkctfInfo.h b/include/tkctfInfo.h
new file mode 100644 (file)
index 0000000..3d7f6da
--- /dev/null
@@ -0,0 +1,41 @@
+/*
+# %M% %Y% %I%
+# The latest update : %G% at %U%
+#
+#%Z% tkctfInfo ver %I%
+#%Z% Created by 
+#%Z%
+#%Z% Usage : tkctfInfo 
+#%Z% Attention
+#%Z%
+*/
+
+#include <tk.h>
+#include "ctfInfo.h"
+
+/* struct begin */
+typedef struct tkctfInfo {
+       int    flagR;
+       float* R;
+       int    nR;
+       ctfInfo ctf;
+} tkctfInfo;
+/* struct end */
+
+/* prototype begin */
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+extern int tkctfInfoCmdSet(Tcl_Interp* interp);
+extern int tkctfInfoFileCmd(ClientData clientData, Tcl_Interp* interp, int argc, CONST char* argv[]);
+extern int tkctfInfoSetCmd(ClientData clientData, Tcl_Interp* interp, int argc, CONST char* argv[]);
+extern int tkctfInfoGetCmd(ClientData clientData, Tcl_Interp* interp, int argc, CONST char* argv[]);
+extern int tkctfInfoCalculateCmd(ClientData clientData, Tcl_Interp* interp, int argc, CONST char* argv[]);
+extern int tkctfInfoCalculate2DCmd(ClientData clientData, Tcl_Interp* interp, int argc, CONST char* argv[]);
+extern int tkctfInfoEvaluateCmd(ClientData clientData, Tcl_Interp* interp, int argc, CONST char* argv[]);
+
+#ifdef __cplusplus
+};
+#endif
+/* prototype end */
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index 0000000..c2bf877
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index 9c49679..a8872d0 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/eosPointRead.sharedo and b/lib/X86LINUX64ICC/shared/eosPointRead.sharedo differ
diff --git a/lib/X86LINUX64ICC/shared/eosPointRotate.sharedo b/lib/X86LINUX64ICC/shared/eosPointRotate.sharedo
new file mode 100644 (file)
index 0000000..986e2be
Binary files /dev/null and b/lib/X86LINUX64ICC/shared/eosPointRotate.sharedo differ
diff --git a/lib/X86LINUX64ICC/shared/eosPointUtil.sharedo b/lib/X86LINUX64ICC/shared/eosPointUtil.sharedo
new file mode 100644 (file)
index 0000000..c00c954
Binary files /dev/null and b/lib/X86LINUX64ICC/shared/eosPointUtil.sharedo differ
diff --git a/lib/X86LINUX64ICC/shared/eosPointWrite.sharedo b/lib/X86LINUX64ICC/shared/eosPointWrite.sharedo
new file mode 100644 (file)
index 0000000..99e5a22
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index 044326b..92edc1a 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lEvaluateCorrelationMapwithCommonLine.sharedo and b/lib/X86LINUX64ICC/shared/lEvaluateCorrelationMapwithCommonLine.sharedo differ
index e99ada4..833994b 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lFETOrientationSearchByFeatureAlignment.sharedo and b/lib/X86LINUX64ICC/shared/lFETOrientationSearchByFeatureAlignment.sharedo differ
index 92c3c49..4b9cbff 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lFETmapOrientationSearchBySimultaneousFitting.sharedo and b/lib/X86LINUX64ICC/shared/lFETmapOrientationSearchBySimultaneousFitting.sharedo differ
index f5b47da..df62e65 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lFETsmallMapSetCreate_forSimultaneousMinimization.sharedo and b/lib/X86LINUX64ICC/shared/lFETsmallMapSetCreate_forSimultaneousMinimization.sharedo differ
index 3df4bac..b778e3d 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lFRET.sharedo and b/lib/X86LINUX64ICC/shared/lFRET.sharedo differ
index 796d78e..e49bc26 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lLcalculation.sharedo and b/lib/X86LINUX64ICC/shared/lLcalculation.sharedo differ
index 18d25fc..f207ada 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lllDataAxisSearch.sharedo and b/lib/X86LINUX64ICC/shared/lllDataAxisSearch.sharedo differ
index f2d6509..dfa9b76 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lllDataFit.sharedo and b/lib/X86LINUX64ICC/shared/lllDataFit.sharedo differ
index a41e82f..50bbfd7 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmolecularEnvelope.sharedo and b/lib/X86LINUX64ICC/shared/lmolecularEnvelope.sharedo differ
index 7cd08bc..ee1996f 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmolvieDisplayLib.sharedo and b/lib/X86LINUX64ICC/shared/lmolvieDisplayLib.sharedo differ
index b359bc4..bc27605 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmolvieMRCread.sharedo and b/lib/X86LINUX64ICC/shared/lmolvieMRCread.sharedo differ
index 1295d16..0441172 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmolvieProjectionKeyboard.sharedo and b/lib/X86LINUX64ICC/shared/lmolvieProjectionKeyboard.sharedo differ
index b8f94a4..900ef34 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrc2Dto3D.sharedo and b/lib/X86LINUX64ICC/shared/lmrc2Dto3D.sharedo differ
index 88103b1..17d70cb 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrc2Dto3DSIRT.sharedo and b/lib/X86LINUX64ICC/shared/lmrc2Dto3DSIRT.sharedo differ
index 30581e4..dc31feb 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrc2gif.sharedo and b/lib/X86LINUX64ICC/shared/lmrc2gif.sharedo differ
index 4860362..fd99c7c 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrc3Dto2D.sharedo and b/lib/X86LINUX64ICC/shared/lmrc3Dto2D.sharedo differ
diff --git a/lib/X86LINUX64ICC/shared/lmrcImage3DPad.sharedo b/lib/X86LINUX64ICC/shared/lmrcImage3DPad.sharedo
new file mode 100644 (file)
index 0000000..213dbfa
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index d531426..21d8575 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrcImageAddValueCuda.sharedo and b/lib/X86LINUX64ICC/shared/lmrcImageAddValueCuda.sharedo differ
index f0d8062..2056b47 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrcImageCVE.sharedo and b/lib/X86LINUX64ICC/shared/lmrcImageCVE.sharedo differ
index 410ad3d..75ec866 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrcImageClusterAnalysis.sharedo and b/lib/X86LINUX64ICC/shared/lmrcImageClusterAnalysis.sharedo differ
diff --git a/lib/X86LINUX64ICC/shared/lmrcImageDeconvolution.sharedo b/lib/X86LINUX64ICC/shared/lmrcImageDeconvolution.sharedo
new file mode 100644 (file)
index 0000000..41c7378
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index 205779b..41103c8 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrcImageFileListAndEulerAngleDataRead.sharedo and b/lib/X86LINUX64ICC/shared/lmrcImageFileListAndEulerAngleDataRead.sharedo differ
index 6ba45db..1331250 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrcImageModelCreate.sharedo and b/lib/X86LINUX64ICC/shared/lmrcImageModelCreate.sharedo differ
index 3551c6c..2eba972 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrcImageMultiplying.sharedo and b/lib/X86LINUX64ICC/shared/lmrcImageMultiplying.sharedo differ
index 0de61e3..54b64b1 100644 (file)
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index 297d6a8..ef3f4ac 100644 (file)
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index c79be19..0a88d39 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.sharedo and b/lib/X86LINUX64ICC/shared/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.sharedo differ
index b8e6d49..8123d4d 100644 (file)
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index ea47cd4..52baf8f 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrcImageTfunction.sharedo and b/lib/X86LINUX64ICC/shared/lmrcImageTfunction.sharedo differ
index a61ae34..4670b6f 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrcImageTriming.sharedo and b/lib/X86LINUX64ICC/shared/lmrcImageTriming.sharedo differ
index 8a44bd0..98d6f92 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lmrcSinogramFETnormalizedMap.sharedo and b/lib/X86LINUX64ICC/shared/lmrcSinogramFETnormalizedMap.sharedo differ
index 9fcb37c..96268a4 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lpdb2mrc2d.sharedo and b/lib/X86LINUX64ICC/shared/lpdb2mrc2d.sharedo differ
index 04dff4f..7069df2 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/lpdb2mrc3d.sharedo and b/lib/X86LINUX64ICC/shared/lpdb2mrc3d.sharedo differ
index e758ab0..ffb89f9 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/marching_cubes.sharedo and b/lib/X86LINUX64ICC/shared/marching_cubes.sharedo differ
diff --git a/lib/X86LINUX64ICC/shared/matrix3DMultiplyMatrix.sharedo b/lib/X86LINUX64ICC/shared/matrix3DMultiplyMatrix.sharedo
new file mode 100644 (file)
index 0000000..c39d344
Binary files /dev/null and b/lib/X86LINUX64ICC/shared/matrix3DMultiplyMatrix.sharedo differ
index 98b8620..eaa633b 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/memoryAllocate.sharedo and b/lib/X86LINUX64ICC/shared/memoryAllocate.sharedo differ
index 87a39b8..2b9719f 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/memoryByteSwap.sharedo and b/lib/X86LINUX64ICC/shared/memoryByteSwap.sharedo differ
index 55ed84f..09eacc8 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/mrcImageGet.sharedo and b/lib/X86LINUX64ICC/shared/mrcImageGet.sharedo differ
index e15e3e7..37356c7 100644 (file)
Binary files a/lib/X86LINUX64ICC/shared/pdbTransCuda.sharedo and b/lib/X86LINUX64ICC/shared/pdbTransCuda.sharedo differ
index d9e387d..6b100be 100644 (file)
@@ -22,7 +22,7 @@ contourCreate.o: contourCreate.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/Contour.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -50,7 +50,8 @@ lcontour2ps.o: lcontour2ps.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/include/psFile.h \
  /home/people/tacyas/Eos/include/File.h ../inc/Contour.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -84,7 +85,7 @@ lmrc2contour.o: lmrc2contour.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 97548c4..11254bb 100644 (file)
Binary files a/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.a and b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.a differ
index 4811217..436c7fa 100644 (file)
Binary files a/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.debug.a and b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.debug.a differ
index 3dd32fc..c47702d 100755 (executable)
Binary files a/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.so and b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.so differ
index 626e5d8..8613ab9 100644 (file)
@@ -1,10 +1,13 @@
 X86LINUX64ICC/tkImgFmtMRC.o:tkImgFmtMRC.o
 X86LINUX64ICC/tkImgFmtlargeIP.o:tkImgFmtlargeIP.o
 X86LINUX64ICC/tkctfInfo.o:tkctfInfo.o
-tkImgFmtMRC.o: tkImgFmtMRC.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+tkImgFmtMRC.o: tkImgFmtMRC.c /usr/include/string.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -16,7 +19,6 @@ tkImgFmtMRC.o: tkImgFmtMRC.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h tkImgFmtMRC.h \
  /usr/include/tk.h /usr/include/tcl.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -39,8 +41,7 @@ tkImgFmtMRC.o: tkImgFmtMRC.c /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/lmrcFFTInfo.h \
- /home/people/tacyas/Eos/include/mrcImage.h /usr/include/string.h \
- /usr/include/xlocale.h
+ /home/people/tacyas/Eos/include/mrcImage.h
 tkImgFmtlargeIP.o: tkImgFmtlargeIP.c /usr/include/tk.h /usr/include/tcl.h \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
@@ -59,11 +60,11 @@ tkImgFmtlargeIP.o: tkImgFmtlargeIP.c /usr/include/tk.h /usr/include/tcl.h \
  /usr/include/bits/pthreadtypes.h /usr/include/X11/X.h \
  /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
  /usr/include/tkDecls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index d64a1f0..fd2711c 100755 (executable)
Binary files a/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/libTclTk.so and b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/libTclTk.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 2a8fed0..0ded96f 100644 (file)
Binary files a/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.a and b/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.a differ
index 8659b98..c4e9a12 100644 (file)
Binary files a/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.debug.a and b/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.debug.a differ
index d514de2..97ba571 100755 (executable)
Binary files a/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.so and b/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.so differ
index d1549cc..a59d276 100644 (file)
@@ -2,9 +2,11 @@ X86LINUX64ICC/avsFileInit.o:avsFileInit.o
 X86LINUX64ICC/avsFileSet.o:avsFileSet.o
 X86LINUX64ICC/avsFileWrite.o:avsFileWrite.o
 avsFileInit.o: avsFileInit.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -15,12 +17,9 @@ avsFileInit.o: avsFileInit.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/xlocale.h /home/people/tacyas/Eos/include/Memory.h \
- /usr/include/stdio.h /usr/include/bits/types.h \
- /usr/include/bits/typesizes.h /usr/include/libio.h \
- /usr/include/_G_config.h /usr/include/wchar.h \
+ /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
@@ -52,9 +51,11 @@ avsFileSet.o: avsFileSet.c /home/people/tacyas/Eos/include/Memory.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h ../inc/avsFile.h
 avsFileWrite.o: avsFileWrite.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -65,10 +66,9 @@ avsFileWrite.o: avsFileWrite.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 561bdce..6ca5a58 100644 (file)
Binary files a/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.a and b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.a differ
index 2fc2b7f..b843b7c 100644 (file)
Binary files a/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.debug.a and b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.debug.a differ
index cf01bec..cb82f7d 100755 (executable)
Binary files a/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.so and b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index f22c043..89cfb7e 100644 (file)
@@ -20,7 +20,8 @@ decoder.o: decoder.c ../inc/gifFile.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -53,7 +54,8 @@ gifFileInit.o: gifFileInit.c ../inc/gifFile.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -86,7 +88,8 @@ gifFileWrite.o: gifFileWrite.c /usr/include/stdio.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/gifFile.h /home/people/tacyas/Eos/include/gif_lib.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -109,11 +112,11 @@ gifUtil.o: gifUtil.c /usr/include/stdlib.h /usr/include/features.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -173,11 +176,11 @@ lmrc2gif.o: lmrc2gif.c /usr/include/stdlib.h /usr/include/features.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index e194d51..a497f06 100644 (file)
Binary files a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.a and b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.a differ
index 515942e..6261845 100644 (file)
Binary files a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.debug.a and b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.debug.a differ
index 38ba5f7..fd4641f 100755 (executable)
Binary files a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.so and b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.so differ
index 30581e4..dc31feb 100644 (file)
Binary files a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/lmrc2gif.sharedo and b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/lmrc2gif.sharedo differ
index 012b18a..3c9157e 100644 (file)
@@ -74,7 +74,7 @@ density_sphere.o: density_sphere.c /usr/include/GL/gl.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -149,7 +149,8 @@ lmolvieCamera.o: lmolvieCamera.c /usr/include/stdio.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -386,7 +387,7 @@ lmolvieDockKeyboard.o: lmolvieDockKeyboard.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -462,7 +463,7 @@ lmolvieFlightIdle.o: lmolvieFlightIdle.c lmolvie.h /usr/include/GL/glut.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -499,7 +500,7 @@ lmolvieFlightKeyboard.o: lmolvieFlightKeyboard.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -536,7 +537,7 @@ lmolvieIdleNormal.o: lmolvieIdleNormal.c lmolvie.h /usr/include/GL/glut.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -573,7 +574,7 @@ lmolvieInitNormal.o: lmolvieInitNormal.c /usr/include/GL/glut.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -610,7 +611,8 @@ lmolvieInitParallel.o: lmolvieInitParallel.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -647,7 +649,7 @@ lmolvieKeyboard.o: lmolvieKeyboard.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -684,7 +686,7 @@ lmolvieKeyboardDrive.o: lmolvieKeyboardDrive.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -721,7 +723,7 @@ lmolvieKeyboardMulti.o: lmolvieKeyboardMulti.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -758,7 +760,7 @@ lmolvieKeyboardNormal.o: lmolvieKeyboardNormal.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -795,7 +797,7 @@ lmolvieKeyboardParallel.o: lmolvieKeyboardParallel.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -832,7 +834,7 @@ lmolvieKeyboardSurface.o: lmolvieKeyboardSurface.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -869,7 +871,7 @@ lmolvieLight.o: lmolvieLight.c /usr/include/stdlib.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -939,7 +941,8 @@ lmolvieMouse.o: lmolvieMouse.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -976,7 +979,8 @@ lmolvieMouseDrive.o: lmolvieMouseDrive.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1013,7 +1017,8 @@ lmolvieMouseMulti.o: lmolvieMouseMulti.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1050,7 +1055,8 @@ lmolvieMouseNormal.o: lmolvieMouseNormal.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1087,7 +1093,8 @@ lmolvieMouseParallel.o: lmolvieMouseParallel.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1163,7 +1170,7 @@ lmolvieMrcViewerKeyboard.o: lmolvieMrcViewerKeyboard.c \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1200,7 +1207,8 @@ lmolvieMrcViewerMouse.o: lmolvieMrcViewerMouse.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1237,7 +1245,7 @@ lmolvieOperation.o: lmolvieOperation.c lmolvie.h /usr/include/GL/glut.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1346,7 +1354,8 @@ lmolvieProjectionMouse.o: lmolvieProjectionMouse.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1383,7 +1392,7 @@ lmolvieProteinStatus.o: lmolvieProteinStatus.c /usr/include/GL/glut.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1420,7 +1429,8 @@ lmolvieReshapeNormal.o: lmolvieReshapeNormal.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1457,7 +1467,8 @@ lmolvieReshapeParallel.o: lmolvieReshapeParallel.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1512,7 +1523,7 @@ lmolvieTexture.o: lmolvieTexture.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1587,7 +1598,7 @@ lmolvieViewerIdle.o: lmolvieViewerIdle.c lmolvie.h /usr/include/GL/glut.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1624,7 +1635,7 @@ lmolvieViewerKeyboard.o: lmolvieViewerKeyboard.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1661,7 +1672,8 @@ lmolvieViewerMouse.o: lmolvieViewerMouse.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1698,7 +1710,7 @@ lmolvieViewerSpecial.o: lmolvieViewerSpecial.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1734,7 +1746,8 @@ lmolvieVoice.o: lmolvieVoice.c /usr/include/GL/glut.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1770,7 +1783,7 @@ loadPDB.o: loadPDB.c /usr/include/stdlib.h /usr/include/features.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1822,7 +1835,8 @@ marching_cubes.o: marching_cubes.c /usr/include/GL/gl.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1863,7 +1877,7 @@ multiPDB.o: multiPDB.c /usr/include/stdlib.h /usr/include/features.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index e1593b4..57258c9 100644 (file)
Binary files a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/drawWireFrame.sharedo and b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/drawWireFrame.sharedo differ
index 4e43e54..cb5ec36 100644 (file)
Binary files a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.a and b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.a differ
index d012ed3..1d96d00 100644 (file)
Binary files a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.debug.a and b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.debug.a differ
index c711145..d2b513c 100755 (executable)
Binary files a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.so and b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.so differ
index 7cd08bc..ee1996f 100644 (file)
Binary files a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayLib.sharedo and b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayLib.sharedo differ
index b359bc4..bc27605 100644 (file)
Binary files a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMRCread.sharedo and b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMRCread.sharedo differ
index 1295d16..0441172 100644 (file)
Binary files a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProjectionKeyboard.sharedo and b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProjectionKeyboard.sharedo differ
index e758ab0..ffb89f9 100644 (file)
Binary files a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/marching_cubes.sharedo and b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/marching_cubes.sharedo differ
index 2326500..66ff2bd 100644 (file)
@@ -43,7 +43,7 @@ psFileContour.o: psFileContour.c /usr/include/stdio.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
  /usr/include/xlocale.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/string.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -80,7 +80,7 @@ psFileContour3D.o: psFileContour3D.c /usr/include/stdio.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
  /usr/include/xlocale.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/string.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 5383221..c7aead3 100644 (file)
Binary files a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.a and b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.a differ
index 5ea8947..493cec0 100644 (file)
Binary files a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.debug.a and b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.debug.a differ
index 6e71735..643e8c7 100755 (executable)
Binary files a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.so and b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 1e598b2..e14bf51 100644 (file)
Binary files a/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/libDCDFile.a and b/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/libDCDFile.a differ
index 462c5ad..b976f20 100644 (file)
Binary files a/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/libDCDFile.debug.a and b/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/libDCDFile.debug.a differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index d895b56..853cad7 100644 (file)
@@ -78,9 +78,11 @@ X86LINUX64ICC/nr2util.o:nr2util.o
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h nr2.h
 10.7.o: 10.7.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -111,9 +113,11 @@ X86LINUX64ICC/nr2util.o:nr2util.o
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h nr2.h
 15.2.o: 15.2.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 5f77ec3..a909967 100644 (file)
Binary files a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.a and b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.a differ
index 34980dd..5b15eb1 100644 (file)
Binary files a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.debug.a and b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.debug.a differ
index ff30fbc..fa89d64 100755 (executable)
Binary files a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.so and b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.so differ
index 4a7c1d3..501774a 100644 (file)
@@ -86,9 +86,11 @@ ctfInfoPVM.o: ctfInfoPVM.c ../inc/ctfInfo.h /usr/include/stdio.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h
 ctfInfoRead.o: ctfInfoRead.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -100,7 +102,6 @@ ctfInfoRead.o: ctfInfoRead.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -112,12 +113,13 @@ ctfInfoRead.o: ctfInfoRead.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /home/people/tacyas/Eos/include/String.h ../inc/ctfInfo.h \
- /usr/include/string.h /usr/include/xlocale.h
+ /home/people/tacyas/Eos/include/String.h ../inc/ctfInfo.h
 ctfInfoWrite.o: ctfInfoWrite.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -129,7 +131,6 @@ ctfInfoWrite.o: ctfInfoWrite.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/String.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -142,10 +143,12 @@ ctfInfoWrite.o: ctfInfoWrite.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h
 ctfInfoWrite2.o: ctfInfoWrite2.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -157,7 +160,6 @@ ctfInfoWrite2.o: ctfInfoWrite2.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/String.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -244,10 +246,12 @@ ctfZeroPoint.o: ctfZeroPoint.c /usr/include/stdlib.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/Vector.h ../inc/ctfInfo.h ctfZeroPoint.h
 lastigmatismDetection.o: lastigmatismDetection.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -258,10 +262,9 @@ lastigmatismDetection.o: lastigmatismDetection.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  lastigmatismDetection.h ../inc/ctfInfo.h
@@ -289,7 +292,8 @@ lctfDetermination.o: lctfDetermination.c /usr/include/stdio.h \
  /usr/include/bits/environments.h /usr/include/bits/confname.h \
  /usr/include/getopt.h lctfDetermination.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -307,10 +311,12 @@ lctfDetermination.o: lctfDetermination.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/nr2.h \
  /home/people/tacyas/Eos/include/Memory.h
 lctfDetermine.o: lctfDetermine.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -322,7 +328,6 @@ lctfDetermine.o: lctfDetermine.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -344,10 +349,12 @@ lctfDetermine.o: lctfDetermine.c \
  lmrcFSInfoScatteringAngularDistributionAverageSection.h \
  lctfDetermination.h ../inc/ctfInfo.h lastigmatismDetection.h
 lmolecularEnvelope.o: lmolecularEnvelope.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -359,7 +366,6 @@ lmolecularEnvelope.o: lmolecularEnvelope.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -395,7 +401,8 @@ lmrcFSInfoScatteringAngularDistributionAverageSection.o: \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -431,7 +438,8 @@ powerspectraTangentLine.o: powerspectraTangentLine.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  powerspectraTangentLine.h /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -462,11 +470,12 @@ thonRing.o: thonRing.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 0140e82..0b74924 100644 (file)
Binary files a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.a and b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.a differ
index f982e1a..ed02fb5 100644 (file)
Binary files a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.debug.a and b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.debug.a differ
index 2b7eb28..62c7ab2 100755 (executable)
Binary files a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.so and b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.so differ
index a41e82f..50bbfd7 100644 (file)
Binary files a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lmolecularEnvelope.sharedo and b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lmolecularEnvelope.sharedo differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 4245338..536df96 100644 (file)
Binary files a/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.a and b/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.a differ
index f82caa6..e6efd7f 100644 (file)
Binary files a/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.debug.a and b/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.debug.a differ
index 302971d..4569167 100755 (executable)
Binary files a/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.so and b/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.so differ
index bda6833..02b4c53 100644 (file)
@@ -1,8 +1,10 @@
 X86LINUX64ICC/emDataRead.o:emDataRead.o
 emDataRead.o: emDataRead.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -14,7 +16,6 @@ emDataRead.o: emDataRead.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index fcd533e..9d155a2 100644 (file)
Binary files a/src/Objects/DataManip/emData/src/X86LINUX64ICC/emDataRead.sharedo and b/src/Objects/DataManip/emData/src/X86LINUX64ICC/emDataRead.sharedo differ
index a0e988e..2b765db 100644 (file)
Binary files a/src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.a and b/src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.a differ
index 3f7fff8..ee83cd8 100644 (file)
Binary files a/src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.debug.a and b/src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.debug.a differ
index 0b3e2b6..179f02c 100755 (executable)
Binary files a/src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.so and b/src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 366bb58..a206464 100755 (executable)
Binary files a/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/liblargeIP.so and b/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/liblargeIP.so differ
index 7de8dd7..f22ccd9 100644 (file)
@@ -123,7 +123,8 @@ llDataInfo.o: llDataInfo.c /usr/include/stdlib.h /usr/include/features.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -142,11 +143,11 @@ llDataInit.o: llDataInit.c /usr/include/stdlib.h /usr/include/features.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -180,7 +181,8 @@ llDataIntensityInformationGet.o: llDataIntensityInformationGet.c \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/llData.h /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -200,7 +202,8 @@ llDataPVM.o: llDataPVM.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/llData.h /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -235,7 +238,8 @@ llDataRead.o: llDataRead.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/llData.h /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -243,9 +247,11 @@ llDataRead.o: llDataRead.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h
 llDataSet.o: llDataSet.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -256,10 +262,9 @@ llDataSet.o: llDataSet.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/llData.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
@@ -289,7 +294,8 @@ llDataUtil.o: llDataUtil.c /usr/include/math.h /usr/include/features.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h ../inc/llData.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h
 llDataWrite.o: llDataWrite.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
@@ -304,7 +310,8 @@ llDataWrite.o: llDataWrite.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/llData.h /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -364,7 +371,8 @@ lllDataAdd.o: lllDataAdd.c /usr/include/math.h /usr/include/features.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -372,10 +380,12 @@ lllDataAdd.o: lllDataAdd.c /usr/include/math.h /usr/include/features.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h
 lllDataAverage.o: lllDataAverage.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -387,7 +397,6 @@ lllDataAverage.o: lllDataAverage.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -423,7 +432,8 @@ lllDataAvgTo.o: lllDataAvgTo.c /usr/include/math.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -446,7 +456,8 @@ lllDataAxisSearch.o: lllDataAxisSearch.c /usr/include/stdlib.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -480,7 +491,8 @@ lllDataAxisSearch2.o: lllDataAxisSearch2.c /usr/include/stdlib.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -494,10 +506,12 @@ lllDataAxisSearch2.o: lllDataAxisSearch2.c /usr/include/stdlib.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h lllDataFit.h ../inc/llData.h
 lllDataAxisSearchAndAverage.o: lllDataAxisSearchAndAverage.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -509,7 +523,6 @@ lllDataAxisSearchAndAverage.o: lllDataAxisSearchAndAverage.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  lllDataAxisSearch.h ../inc/llData.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -568,10 +581,12 @@ lllDataCTFObservation.o: lllDataCTFObservation.c /usr/include/stdio.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 lllDataCompare.o: lllDataCompare.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -582,10 +597,9 @@ lllDataCompare.o: lllDataCompare.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/llData.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h lllDataCompare.h \
@@ -595,8 +609,7 @@ lllDataCompare.o: lllDataCompare.c \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h
 lllDataContributionCalcDifferentN.o: lllDataContributionCalcDifferentN.c \
  /usr/include/stdlib.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
@@ -618,7 +631,8 @@ lllDataContributionCalcDifferentN.o: lllDataContributionCalcDifferentN.c \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -639,11 +653,11 @@ lllDataDifferenceCalc.o: lllDataDifferenceCalc.c /usr/include/stdlib.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -657,10 +671,12 @@ lllDataDifferenceCalc.o: lllDataDifferenceCalc.c /usr/include/stdlib.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h
 lllDataEquatorAdd.o: lllDataEquatorAdd.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -671,10 +687,9 @@ lllDataEquatorAdd.o: lllDataEquatorAdd.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/llData.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h lllDataEquatorAdd.h \
@@ -684,13 +699,14 @@ lllDataEquatorAdd.o: lllDataEquatorAdd.c \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h
 lllDataExtract.o: lllDataExtract.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -701,10 +717,9 @@ lllDataExtract.o: lllDataExtract.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/llData.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h lllDataExtract.h \
@@ -714,8 +729,7 @@ lllDataExtract.o: lllDataExtract.c \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h
 lllDataFit.o: lllDataFit.c /usr/include/math.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
@@ -732,7 +746,7 @@ lllDataFit.o: lllDataFit.c /usr/include/math.h /usr/include/features.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -772,7 +786,8 @@ lllDataFit2.o: lllDataFit2.c /usr/include/math.h /usr/include/features.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h lllDataFit.h ../inc/llData.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -788,11 +803,12 @@ lllDataFitAndAverage.o: lllDataFitAndAverage.c /usr/include/unistd.h \
  /usr/include/bits/typesizes.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/confname.h /usr/include/getopt.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -848,7 +864,8 @@ lllDataFitOut.o: lllDataFitOut.c /usr/include/math.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h lllDataFit.h ../inc/llData.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -913,7 +930,7 @@ lllDataFitUtilPVM.o: lllDataFitUtilPVM.c /usr/include/math.h \
  /usr/include/unistd.h /usr/include/bits/posix_opt.h \
  /usr/include/bits/environments.h /usr/include/bits/confname.h \
  /usr/include/getopt.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -950,7 +967,8 @@ lllDataInterpolate.o: lllDataInterpolate.c /usr/include/stdlib.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/llData.h /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -959,10 +977,12 @@ lllDataInterpolate.o: lllDataInterpolate.c /usr/include/stdlib.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h
 lllDataLowPassFiltering.o: lllDataLowPassFiltering.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -974,7 +994,6 @@ lllDataLowPassFiltering.o: lllDataLowPassFiltering.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -1009,7 +1028,8 @@ lllDataMergeDifferentN.o: lllDataMergeDifferentN.c /usr/include/stdlib.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1033,11 +1053,12 @@ lllDataMultiCTFCompensation.o: lllDataMultiCTFCompensation.c \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1048,10 +1069,12 @@ lllDataMultiCTFCompensation.o: lllDataMultiCTFCompensation.c \
  /home/people/tacyas/Eos/include/ctfInfo.h lllDataFitAndAverage.h \
  lllDataFit.h lllDataCTFCompensation.h
 lllDataPhaseShift.o: lllDataPhaseShift.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1062,13 +1085,12 @@ lllDataPhaseShift.o: lllDataPhaseShift.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/stdlib.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/types.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/time.h /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h ../inc/llData.h /usr/include/stdio.h \
@@ -1100,10 +1122,12 @@ lllDataPrint.o: lllDataPrint.c /usr/include/stdlib.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 lllDataRescaling.o: lllDataRescaling.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1114,10 +1138,9 @@ lllDataRescaling.o: lllDataRescaling.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/llData.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h lllDataRescaling.h \
@@ -1138,11 +1161,12 @@ lllDataSingleCTFCompensation.o: lllDataSingleCTFCompensation.c \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1153,10 +1177,12 @@ lllDataSingleCTFCompensation.o: lllDataSingleCTFCompensation.c \
  /home/people/tacyas/Eos/include/ctfInfo.h lllDataCTFCompensation.h \
  lllDataFit.h lllDataFitAndAverage.h
 lllDataWeightSet.o: lllDataWeightSet.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1167,13 +1193,12 @@ lllDataWeightSet.o: lllDataWeightSet.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/stdlib.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/types.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/time.h /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h ../inc/llData.h /usr/include/stdio.h \
@@ -1196,7 +1221,8 @@ lllDatarMaxLimit.o: lllDatarMaxLimit.c ../inc/llData.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index ba99a92..71bf762 100644 (file)
Binary files a/src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.a and b/src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.a differ
index e08bcd8..ce782c1 100644 (file)
Binary files a/src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.debug.a and b/src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.debug.a differ
index 27aaec3..81f2795 100755 (executable)
Binary files a/src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.so and b/src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.so differ
index 18d25fc..f207ada 100644 (file)
Binary files a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearch.sharedo and b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearch.sharedo differ
index f2d6509..dfa9b76 100644 (file)
Binary files a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFit.sharedo and b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFit.sharedo differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 05a2784..bf340cd 100644 (file)
Binary files a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.a and b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.a differ
index fe83c26..dc575de 100644 (file)
Binary files a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.debug.a and b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.debug.a differ
index 854e170..9cd8471 100755 (executable)
Binary files a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.so and b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 0625492..99c5ce2 100644 (file)
@@ -4,6 +4,7 @@ X86LINUX64ICC/lmrcFFTExpression.o:lmrcFFTExpression.o
 X86LINUX64ICC/lmrcFFTFGconj.o:lmrcFFTFGconj.o
 X86LINUX64ICC/lmrcFFTFxG.o:lmrcFFTFxG.o
 X86LINUX64ICC/lmrcFFTInfo.o:lmrcFFTInfo.o
+X86LINUX64ICC/lmrcImage3DPad.o:lmrcImage3DPad.o
 X86LINUX64ICC/lmrcImage3DWindowing.o:lmrcImage3DWindowing.o
 X86LINUX64ICC/lmrcImageAddValue.o:lmrcImageAddValue.o
 X86LINUX64ICC/lmrcImageAsProbability.o:lmrcImageAsProbability.o
@@ -34,6 +35,7 @@ X86LINUX64ICC/lmrcImageCorrelationinSpace.o:lmrcImageCorrelationinSpace.o
 X86LINUX64ICC/lmrcImageCrystalCreate.o:lmrcImageCrystalCreate.o
 X86LINUX64ICC/lmrcImageDataMaxAndMinGetByImage.o:lmrcImageDataMaxAndMinGetByImage.o
 X86LINUX64ICC/lmrcImageDataStraightCopy.o:lmrcImageDataStraightCopy.o
+X86LINUX64ICC/lmrcImageDeconvolution.o:lmrcImageDeconvolution.o
 X86LINUX64ICC/lmrcImageDensity.o:lmrcImageDensity.o
 X86LINUX64ICC/lmrcImageDensityInverse.o:lmrcImageDensityInverse.o
 X86LINUX64ICC/lmrcImageDensityNormalizationByImage.o:lmrcImageDensityNormalizationByImage.o
@@ -254,7 +256,7 @@ lmrcFFTFGconj.o: lmrcFFTFGconj.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -286,7 +288,7 @@ lmrcFFTFxG.o: lmrcFFTFxG.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -317,7 +319,8 @@ lmrcFFTInfo.o: lmrcFFTInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -330,11 +333,46 @@ lmrcFFTInfo.o: lmrcFFTInfo.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h lmrcFFTInfo.h
+lmrcImage3DPad.o: lmrcImage3DPad.c lmrcImage3DPad.h /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/mrcImage.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h
 lmrcImage3DWindowing.o: lmrcImage3DWindowing.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -345,10 +383,9 @@ lmrcImage3DWindowing.o: lmrcImage3DWindowing.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- lmrcImage3DWindowing.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ lmrcImage3DWindowing.h /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
@@ -357,8 +394,7 @@ lmrcImage3DWindowing.o: lmrcImage3DWindowing.c \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h ../inc/mrcImage.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/mrcImage.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
@@ -380,19 +416,20 @@ lmrcImageAddValue.o: lmrcImageAddValue.c /usr/include/stdio.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /home/people/tacyas/Eos/include/eosCuda.h lmrcImageAddValue.h \
../inc/mrcImage.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/xlocale.h /home/people/tacyas/Eos/include/genUtil.h \
/usr/include/string.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/eosCuda.h lmrcImageAddValue.h \
+ ../inc/mrcImage.h /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
@@ -411,7 +448,8 @@ lmrcImageAsProbability.o: lmrcImageAsProbability.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -424,10 +462,12 @@ lmrcImageAsProbability.o: lmrcImageAsProbability.c \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
 lmrcImageAverage.o: lmrcImageAverage.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -439,7 +479,6 @@ lmrcImageAverage.o: lmrcImageAverage.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -478,7 +517,7 @@ lmrcImageBandPassFilter.o: lmrcImageBandPassFilter.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -492,10 +531,12 @@ lmrcImageBandPassFilter.o: lmrcImageBandPassFilter.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h
 lmrcImageBilateralFilter.o: lmrcImageBilateralFilter.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -507,7 +548,6 @@ lmrcImageBilateralFilter.o: lmrcImageBilateralFilter.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -574,11 +614,11 @@ lmrcImageCTFCompensation.o: lmrcImageCTFCompensation.c \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -642,10 +682,12 @@ lmrcImageCTFDetermination.o: lmrcImageCTFDetermination.c \
  /home/people/tacyas/Eos/include/lllExtractdYEstimate.h lmrcImagePad.h \
  /home/people/tacyas/Eos/include/Memory.h
 lmrcImageCTFObservation.o: lmrcImageCTFObservation.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -657,7 +699,6 @@ lmrcImageCTFObservation.o: lmrcImageCTFObservation.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -687,7 +728,8 @@ lmrcImageCTFSN.o: lmrcImageCTFSN.c /usr/include/stdio.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -728,7 +770,7 @@ lmrcImageCVE.o: lmrcImageCVE.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -742,10 +784,12 @@ lmrcImageCVE.o: lmrcImageCVE.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h
 lmrcImageCalcArea.o: lmrcImageCalcArea.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -757,7 +801,6 @@ lmrcImageCalcArea.o: lmrcImageCalcArea.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -795,7 +838,8 @@ lmrcImageCenterGet.o: lmrcImageCenterGet.c /usr/include/stdlib.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -806,7 +850,7 @@ lmrcImageCenterGet.o: lmrcImageCenterGet.c /usr/include/stdlib.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h /usr/include/xlocale.h \
+ /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Random.h
 lmrcImageCentre.o: lmrcImageCentre.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
@@ -861,7 +905,8 @@ lmrcImageClosing.o: lmrcImageClosing.c lmrcImageMorphology.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -912,10 +957,12 @@ lmrcImageClusterAnalysis.o: lmrcImageClusterAnalysis.c \
  lmrcImageCorrelation.h /home/people/tacyas/Eos/include/PVM.h \
  lmrcImageSSDA.h /home/people/tacyas/Eos/include/Cluster.h
 lmrcImageCommonLine.o: lmrcImageCommonLine.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -927,7 +974,6 @@ lmrcImageCommonLine.o: lmrcImageCommonLine.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  lmrcImageSinogram.h ../inc/mrcImage.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -943,8 +989,7 @@ lmrcImageCommonLine.o: lmrcImageCommonLine.c \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h
 lmrcImageConnection.o: lmrcImageConnection.c lmrcImageConnection.h \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
@@ -1027,7 +1072,8 @@ lmrcImageContourSurface.o: lmrcImageContourSurface.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1092,7 +1138,8 @@ lmrcImageCorrelationWithCTFCompensation.o: \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1124,7 +1171,8 @@ lmrcImageCorrelationinSpace.o: lmrcImageCorrelationinSpace.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1183,7 +1231,8 @@ lmrcImageDataMaxAndMinGetByImage.o: lmrcImageDataMaxAndMinGetByImage.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1209,7 +1258,8 @@ lmrcImageDataStraightCopy.o: lmrcImageDataStraightCopy.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1221,6 +1271,42 @@ lmrcImageDataStraightCopy.o: lmrcImageDataStraightCopy.c \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h lmrcImageDataStraightCopy.h
+lmrcImageDeconvolution.o: lmrcImageDeconvolution.c /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/string.h /usr/include/xlocale.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/mrcImage.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h lmrcImageDeconvolution.h \
+ ../inc/mrcImage.h lmrcImage3DPad.h lmrcImageMultiplying.h \
+ lmrcImageSubtractionCalc.h lmrcImageDensityNormalizationByImage.h \
+ lmrcImageSigmaCalculate.h lmrcImageAddValue.h
 lmrcImageDensity.o: lmrcImageDensity.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
@@ -1270,7 +1356,8 @@ lmrcImageDensityInverse.o: lmrcImageDensityInverse.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1284,10 +1371,12 @@ lmrcImageDensityInverse.o: lmrcImageDensityInverse.c \
  /home/people/tacyas/Eos/include/Array.h
 lmrcImageDensityNormalizationByImage.o: \
  lmrcImageDensityNormalizationByImage.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1299,7 +1388,6 @@ lmrcImageDensityNormalizationByImage.o: \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -1332,7 +1420,8 @@ lmrcImageDilation.o: lmrcImageDilation.c ../inc/mrcImage.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1406,7 +1495,8 @@ lmrcImageEdge.o: lmrcImageEdge.c /usr/include/stdio.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1419,10 +1509,12 @@ lmrcImageEdge.o: lmrcImageEdge.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
 lmrcImageEdgeAverage.o: lmrcImageEdgeAverage.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1434,7 +1526,6 @@ lmrcImageEdgeAverage.o: lmrcImageEdgeAverage.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -1453,10 +1544,12 @@ lmrcImageEdgeAverage.o: lmrcImageEdgeAverage.c \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
 lmrcImageErosion.o: lmrcImageErosion.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1467,10 +1560,9 @@ lmrcImageErosion.o: lmrcImageErosion.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/mrcImage.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -1486,9 +1578,11 @@ lmrcImageErosion.o: lmrcImageErosion.c \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/mrcImage.h
 lmrcImageFFT.o: lmrcImageFFT.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1500,7 +1594,6 @@ lmrcImageFFT.o: lmrcImageFFT.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -1513,7 +1606,7 @@ lmrcImageFFT.o: lmrcImageFFT.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
  /home/people/tacyas/Eos/include/eosPThread.h /usr/include/pthread.h \
- /usr/include/sched.h /usr/include/bits/sched.h /usr/include/xlocale.h \
+ /usr/include/sched.h /usr/include/bits/sched.h \
  /usr/include/bits/setjmp.h /usr/include/errno.h \
  /usr/include/bits/errno.h /usr/include/linux/errno.h \
  /usr/include/asm/errno.h /usr/include/asm-generic/errno.h \
@@ -1522,12 +1615,15 @@ lmrcImageFFT.o: lmrcImageFFT.c /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h fftn.h
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/cuda.h fftn.h
 lmrcImageFOMCalc.o: lmrcImageFOMCalc.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1539,7 +1635,6 @@ lmrcImageFOMCalc.o: lmrcImageFOMCalc.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -1572,7 +1667,7 @@ lmrcImageFeatureExtraction.o: lmrcImageFeatureExtraction.c \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1590,8 +1685,8 @@ lmrcImageFeatureExtraction.o: lmrcImageFeatureExtraction.c \
  /usr/include/time.h /usr/include/sys/select.h /usr/include/bits/select.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/xlocale.h \
/home/people/tacyas/Eos/include/Memory.h ../inc/mrcImage.h
+ /usr/include/alloca.h /home/people/tacyas/Eos/include/Memory.h \
+ ../inc/mrcImage.h
 lmrcImageFeatureExtractionCoOccurrence.o: \
  lmrcImageFeatureExtractionCoOccurrence.c lmrcImageFeatureExtraction.h \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
@@ -1607,7 +1702,7 @@ lmrcImageFeatureExtractionCoOccurrence.o: \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1626,7 +1721,6 @@ lmrcImageFeatureExtractionCoOccurrence.o: \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Memory.h ../inc/mrcImage.h \
  /home/people/tacyas/Eos/include/nr2.h
 lmrcImageFeatureExtractionRunLength.o: \
@@ -1644,7 +1738,7 @@ lmrcImageFeatureExtractionRunLength.o: \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1663,7 +1757,6 @@ lmrcImageFeatureExtractionRunLength.o: \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/nr2.h ../inc/mrcImage.h
 lmrcImageFilterCreate.o: lmrcImageFilterCreate.c \
@@ -1693,7 +1786,7 @@ lmrcImageFilterCreate.o: lmrcImageFilterCreate.c \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
@@ -1714,7 +1807,8 @@ lmrcImageFirstNoiseReductionByRelaxation.o: \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1741,7 +1835,8 @@ lmrcImageFourierPowerSpectrum.o: lmrcImageFourierPowerSpectrum.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1762,10 +1857,12 @@ lmrcImageFourierPowerSpectrum.o: lmrcImageFourierPowerSpectrum.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h
 lmrcImageFourierShellCorrelation.o: lmrcImageFourierShellCorrelation.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1777,7 +1874,6 @@ lmrcImageFourierShellCorrelation.o: lmrcImageFourierShellCorrelation.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -1817,7 +1913,7 @@ lmrcImageHighPassFilter.o: lmrcImageHighPassFilter.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1851,7 +1947,7 @@ lmrcImageHighlighting.o: lmrcImageHighlighting.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1865,10 +1961,12 @@ lmrcImageHighlighting.o: lmrcImageHighlighting.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h
 lmrcImageLabeling.o: lmrcImageLabeling.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1880,7 +1978,6 @@ lmrcImageLabeling.o: lmrcImageLabeling.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  lmrcImageLabeling.h ../inc/mrcImage.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -1911,7 +2008,7 @@ lmrcImageLowPassFilter.o: lmrcImageLowPassFilter.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1925,10 +2022,12 @@ lmrcImageLowPassFilter.o: lmrcImageLowPassFilter.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h
 lmrcImageMasking.o: lmrcImageMasking.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1939,10 +2038,9 @@ lmrcImageMasking.o: lmrcImageMasking.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/mrcImage.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -1963,7 +2061,8 @@ lmrcImageMaxDataGet.o: lmrcImageMaxDataGet.c ../inc/mrcImage.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1988,7 +2087,8 @@ lmrcImageMirroring.o: lmrcImageMirroring.c lmrcImageMirroring.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2013,11 +2113,11 @@ lmrcImageModeChange.o: lmrcImageModeChange.c /usr/include/stdlib.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2067,10 +2167,12 @@ lmrcImageModelCreate.o: lmrcImageModelCreate.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h lmrcImageModelCreate.h
 lmrcImageMontageCreate.o: lmrcImageMontageCreate.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -2082,7 +2184,6 @@ lmrcImageMontageCreate.o: lmrcImageMontageCreate.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -2100,7 +2201,7 @@ lmrcImageMontageCreate.o: lmrcImageMontageCreate.c \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h lmrcImagePad.h \
/usr/include/string.h /usr/include/xlocale.h lmrcImageEdgeAverage.h
+ lmrcImageEdgeAverage.h
 lmrcImageMorphology.o: lmrcImageMorphology.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
@@ -2122,7 +2223,7 @@ lmrcImageMorphology.o: lmrcImageMorphology.c /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2154,7 +2255,8 @@ lmrcImageMove.o: lmrcImageMove.c /usr/include/stdio.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2167,10 +2269,12 @@ lmrcImageMove.o: lmrcImageMove.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
 lmrcImageMultiCTFCompensation.o: lmrcImageMultiCTFCompensation.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -2182,7 +2286,6 @@ lmrcImageMultiCTFCompensation.o: lmrcImageMultiCTFCompensation.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -2249,11 +2352,12 @@ lmrcImageNormalizing.o: lmrcImageNormalizing.c /usr/include/stdlib.h \
  /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2321,7 +2425,8 @@ lmrcImageOpening.o: lmrcImageOpening.c lmrcImageMorphology.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2334,9 +2439,11 @@ lmrcImageOpening.o: lmrcImageOpening.c lmrcImageMorphology.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
 lmrcImagePad.o: lmrcImagePad.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -2347,10 +2454,9 @@ lmrcImagePad.o: lmrcImagePad.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h lmrcImagePad.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
@@ -2359,8 +2465,7 @@ lmrcImagePad.o: lmrcImagePad.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h ../inc/mrcImage.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/mrcImage.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
@@ -2394,7 +2499,7 @@ lmrcImagePartImageSegmentation.o: lmrcImagePartImageSegmentation.c \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
@@ -2415,7 +2520,8 @@ lmrcImagePixelSummationOfProbabilityGetByImage.o: \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2444,7 +2550,7 @@ lmrcImagePosterization.o: lmrcImagePosterization.c \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2463,7 +2569,6 @@ lmrcImagePosterization.o: lmrcImagePosterization.c \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Memory.h ../inc/mrcImage.h
 lmrcImageProjection.o: lmrcImageProjection.c lmrcImageProjection.h \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
@@ -2512,7 +2617,8 @@ lmrcImageProportionalDensityLevelSetByImage.o: \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2542,11 +2648,12 @@ lmrcImageROI2D.o: lmrcImageROI2D.c /usr/include/stdio.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2614,7 +2721,8 @@ lmrcImageROInotChangeHeaderLength.o: lmrcImageROInotChangeHeaderLength.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2628,10 +2736,12 @@ lmrcImageROInotChangeHeaderLength.o: lmrcImageROInotChangeHeaderLength.c \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/mrcRefUtil.h
 lmrcImageRadialDistribution.o: lmrcImageRadialDistribution.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -2642,10 +2752,9 @@ lmrcImageRadialDistribution.o: lmrcImageRadialDistribution.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/mrcImage.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -2670,18 +2779,18 @@ lmrcImageRhoFiltering.o: lmrcImageRhoFiltering.c /usr/include/math.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/mrcImage.h \
- /usr/include/stdio.h /usr/include/libio.h /usr/include/_G_config.h \
- /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/eosFunc.h /usr/include/stdio.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/ctfInfo.h \
../inc/mrcImage.h /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
@@ -2700,7 +2809,8 @@ lmrcImageRotation.o: lmrcImageRotation.c /usr/include/math.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2713,10 +2823,12 @@ lmrcImageRotation.o: lmrcImageRotation.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
 lmrcImageSSDA.o: lmrcImageSSDA.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -2727,10 +2839,9 @@ lmrcImageSSDA.o: lmrcImageSSDA.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h lmrcImageSSDA.h \
- ../inc/mrcImage.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ ../inc/mrcImage.h /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -2752,7 +2863,8 @@ lmrcImageSamplingUnitChange.o: lmrcImageSamplingUnitChange.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2778,7 +2890,8 @@ lmrcImageSecondNoiseReductionByRelaxation.o: \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2806,7 +2919,8 @@ lmrcImageSecondNoiseReductionByRelaxationDijDimensionSet.o: \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2849,7 +2963,8 @@ lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.o: \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2878,7 +2993,8 @@ lmrcImageSecondNoiseReductionByRelaxationDijValueSet.o: \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2917,11 +3033,11 @@ lmrcImageSecondNoiseReductionByRelaxationQValueSet.o: \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/mrcImage.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
@@ -2945,7 +3061,8 @@ lmrcImageSecondNoiseReductionByRelaxationRValueSet.o: \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2969,11 +3086,12 @@ lmrcImageShapePCA.o: lmrcImageShapePCA.c lmrcImageShapePCA.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -2999,7 +3117,8 @@ lmrcImageShift.o: lmrcImageShift.c /usr/include/math.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3018,7 +3137,6 @@ lmrcImageShift.o: lmrcImageShift.c /usr/include/math.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Memory.h lmrcImageModeChange.h
 lmrcImageShrink.o: lmrcImageShrink.c /usr/include/stdlib.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
@@ -3040,7 +3158,8 @@ lmrcImageShrink.o: lmrcImageShrink.c /usr/include/stdlib.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3065,7 +3184,8 @@ lmrcImageSigmaCalculate.o: lmrcImageSigmaCalculate.c /usr/include/math.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3078,10 +3198,12 @@ lmrcImageSigmaCalculate.o: lmrcImageSigmaCalculate.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h lmrcImageSigmaCalculate.h
 lmrcImageSinogram.o: lmrcImageSinogram.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -3093,7 +3215,6 @@ lmrcImageSinogram.o: lmrcImageSinogram.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  lmrcImageSinogram.h ../inc/mrcImage.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -3112,10 +3233,12 @@ lmrcImageSinogram.o: lmrcImageSinogram.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h
 lmrcImageSinogramCorrelation.o: lmrcImageSinogramCorrelation.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -3127,7 +3250,6 @@ lmrcImageSinogramCorrelation.o: lmrcImageSinogramCorrelation.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  lmrcImageSinogram.h ../inc/mrcImage.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -3158,7 +3280,8 @@ lmrcImageSinogramFFT.o: lmrcImageSinogramFFT.c ../inc/mrcImage.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3186,11 +3309,12 @@ lmrcImageSmoothing.o: lmrcImageSmoothing.c /usr/include/stdio.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3216,7 +3340,8 @@ lmrcImageSolventFlattening.o: lmrcImageSolventFlattening.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3234,8 +3359,7 @@ lmrcImageSolventFlattening.o: lmrcImageSolventFlattening.c \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h ../inc/mrcImage.h
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/mrcImage.h
 lmrcImageSphere.o: lmrcImageSphere.c lmrcImageSphere.h \
  /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
@@ -3317,7 +3441,8 @@ lmrcImageStudentCalculate.o: lmrcImageStudentCalculate.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3343,7 +3468,8 @@ lmrcImageSubtractionCalc.o: lmrcImageSubtractionCalc.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3369,7 +3495,8 @@ lmrcImageSummationCalculate.o: lmrcImageSummationCalculate.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3440,7 +3567,7 @@ lmrcImageTfunction.o: lmrcImageTfunction.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3466,7 +3593,8 @@ lmrcImageTrans.o: lmrcImageTrans.c ../inc/mrcImage.h /usr/include/stdio.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3529,7 +3657,8 @@ lmrcImageTriming.o: lmrcImageTriming.c lmrcImageTriming.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3542,10 +3671,12 @@ lmrcImageTriming.o: lmrcImageTriming.c lmrcImageTriming.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
 lmrcImageVolumeCalc.o: lmrcImageVolumeCalc.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -3557,7 +3688,6 @@ lmrcImageVolumeCalc.o: lmrcImageVolumeCalc.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -3582,17 +3712,18 @@ lmrcImageWindowing.o: lmrcImageWindowing.c /usr/include/math.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/mrcImage.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -3614,11 +3745,11 @@ lmrcImagesFTest.o: lmrcImagesFTest.c /usr/include/stdlib.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/nr2.h \
  lmrcImagesStatDataGet.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3647,11 +3778,11 @@ lmrcImagesStatDataGet.o: lmrcImagesStatDataGet.c /usr/include/stdlib.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3680,11 +3811,11 @@ lmrcImagesTTest.o: lmrcImagesTTest.c /usr/include/stdlib.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3714,11 +3845,11 @@ lmrcImagesVarianceAnalysis.o: lmrcImagesVarianceAnalysis.c \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -3748,11 +3879,11 @@ lmrcImagesVarianceMap.o: lmrcImagesVarianceMap.c /usr/include/stdlib.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4051,7 +4182,8 @@ mrcImageCheckFFT.o: mrcImageCheckFFT.c /usr/include/math.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4083,7 +4215,8 @@ mrcImageCheckSameSize.o: mrcImageCheckSameSize.c /usr/include/math.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4115,7 +4248,8 @@ mrcImageCopy.o: mrcImageCopy.c /usr/include/math.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4128,10 +4262,12 @@ mrcImageCopy.o: mrcImageCopy.c /usr/include/math.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
 mrcImageDataSet.o: mrcImageDataSet.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -4142,13 +4278,12 @@ mrcImageDataSet.o: mrcImageDataSet.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/stdlib.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/types.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/time.h /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h ../inc/mrcImage.h /usr/include/stdio.h \
@@ -4173,7 +4308,8 @@ mrcImageError.o: mrcImageError.c ../inc/mrcImage.h /usr/include/stdio.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4211,7 +4347,8 @@ mrcImageGet.o: mrcImageGet.c /usr/include/math.h /usr/include/features.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4224,9 +4361,11 @@ mrcImageGet.o: mrcImageGet.c /usr/include/math.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
 mrcImageInfo.o: mrcImageInfo.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -4237,13 +4376,12 @@ mrcImageInfo.o: mrcImageInfo.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/stdlib.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/types.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/time.h /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h ../inc/mrcImage.h /usr/include/stdio.h \
@@ -4257,9 +4395,11 @@ mrcImageInfo.o: mrcImageInfo.c /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/Array.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcImageInit.o: mrcImageInit.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -4271,7 +4411,6 @@ mrcImageInit.o: mrcImageInit.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -4343,7 +4482,8 @@ mrcImagePrint.o: mrcImagePrint.c /usr/include/stdlib.h \
  /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4362,9 +4502,11 @@ mrcImagePrint.o: mrcImagePrint.c /usr/include/stdlib.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/mrcImage.h
 mrcImageRead.o: mrcImageRead.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -4376,7 +4518,6 @@ mrcImageRead.o: mrcImageRead.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -4394,8 +4535,7 @@ mrcImageRead.o: mrcImageRead.c /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h lmrcImagePrint.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/psFile.h \
- /home/people/tacyas/Eos/include/File.h /usr/include/string.h \
- /usr/include/xlocale.h
+ /home/people/tacyas/Eos/include/File.h
 mrcImageSectionGet.o: mrcImageSectionGet.c /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
@@ -4442,7 +4582,8 @@ mrcImageSectionSet.o: mrcImageSectionSet.c ../inc/mrcImage.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4466,7 +4607,8 @@ mrcImageSet.o: mrcImageSet.c /usr/include/math.h /usr/include/features.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4505,7 +4647,7 @@ mrcImageTailer.o: mrcImageTailer.c \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
@@ -4525,7 +4667,8 @@ mrcImageToIntImage.o: mrcImageToIntImage.c ../inc/mrcImage.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4590,7 +4733,8 @@ mrcImageUtilityforVariance.o: mrcImageUtilityforVariance.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4602,13 +4746,15 @@ mrcImageUtilityforVariance.o: mrcImageUtilityforVariance.c \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcRefUtil.h /usr/include/xlocale.h \
+ /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/Random.h
 mrcImageWrite.o: mrcImageWrite.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -4620,7 +4766,6 @@ mrcImageWrite.o: mrcImageWrite.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -4639,10 +4784,12 @@ mrcImageWrite.o: mrcImageWrite.c \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
 mrcImageWrite2.o: mrcImageWrite2.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -4653,10 +4800,9 @@ mrcImageWrite2.o: mrcImageWrite2.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/mrcImage.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -4685,7 +4831,7 @@ mrcImagefuncmin.o: mrcImagefuncmin.c /usr/include/math.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  ../inc/mrcImage.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4717,7 +4863,8 @@ mrcRefUtil.o: mrcRefUtil.c /usr/include/stdlib.h /usr/include/features.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -4729,5 +4876,5 @@ mrcRefUtil.o: mrcRefUtil.c /usr/include/stdlib.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcRefUtil.h /usr/include/xlocale.h \
+ /home/people/tacyas/Eos/include/mrcRefUtil.h \
  /home/people/tacyas/Eos/include/Random.h
index 1892977..11a4f4f 100644 (file)
@@ -5,6 +5,7 @@ lmrcFFTExpression.c \
 lmrcFFTFGconj.c \
 lmrcFFTFxG.c \
 lmrcFFTInfo.c \
+lmrcImage3DPad.c \
 lmrcImage3DWindowing.c \
 lmrcImageAddValue.c \
 lmrcImageAsProbability.c \
@@ -35,6 +36,7 @@ lmrcImageCorrelationinSpace.c \
 lmrcImageCrystalCreate.c \
 lmrcImageDataMaxAndMinGetByImage.c \
 lmrcImageDataStraightCopy.c \
+lmrcImageDeconvolution.c \
 lmrcImageDensity.c \
 lmrcImageDensityInverse.c \
 lmrcImageDensityNormalizationByImage.c \
@@ -155,6 +157,7 @@ lmrcFFTExpression.o \
 lmrcFFTFGconj.o \
 lmrcFFTFxG.o \
 lmrcFFTInfo.o \
+lmrcImage3DPad.o \
 lmrcImage3DWindowing.o \
 lmrcImageAddValue.o \
 lmrcImageAsProbability.o \
@@ -185,6 +188,7 @@ lmrcImageCorrelationinSpace.o \
 lmrcImageCrystalCreate.o \
 lmrcImageDataMaxAndMinGetByImage.o \
 lmrcImageDataStraightCopy.o \
+lmrcImageDeconvolution.o \
 lmrcImageDensity.o \
 lmrcImageDensityInverse.o \
 lmrcImageDensityNormalizationByImage.o \
@@ -305,6 +309,7 @@ lmrcFFTExpression.sharedo \
 lmrcFFTFGconj.sharedo \
 lmrcFFTFxG.sharedo \
 lmrcFFTInfo.sharedo \
+lmrcImage3DPad.sharedo \
 lmrcImage3DWindowing.sharedo \
 lmrcImageAddValue.sharedo \
 lmrcImageAsProbability.sharedo \
@@ -335,6 +340,7 @@ lmrcImageCorrelationinSpace.sharedo \
 lmrcImageCrystalCreate.sharedo \
 lmrcImageDataMaxAndMinGetByImage.sharedo \
 lmrcImageDataStraightCopy.sharedo \
+lmrcImageDeconvolution.sharedo \
 lmrcImageDensity.sharedo \
 lmrcImageDensityInverse.sharedo \
 lmrcImageDensityNormalizationByImage.sharedo \
@@ -455,6 +461,7 @@ X86LINUX64ICC/lmrcFFTExpression.o \
 X86LINUX64ICC/lmrcFFTFGconj.o \
 X86LINUX64ICC/lmrcFFTFxG.o \
 X86LINUX64ICC/lmrcFFTInfo.o \
+X86LINUX64ICC/lmrcImage3DPad.o \
 X86LINUX64ICC/lmrcImage3DWindowing.o \
 X86LINUX64ICC/lmrcImageAddValue.o \
 X86LINUX64ICC/lmrcImageAsProbability.o \
@@ -485,6 +492,7 @@ X86LINUX64ICC/lmrcImageCorrelationinSpace.o \
 X86LINUX64ICC/lmrcImageCrystalCreate.o \
 X86LINUX64ICC/lmrcImageDataMaxAndMinGetByImage.o \
 X86LINUX64ICC/lmrcImageDataStraightCopy.o \
+X86LINUX64ICC/lmrcImageDeconvolution.o \
 X86LINUX64ICC/lmrcImageDensity.o \
 X86LINUX64ICC/lmrcImageDensityInverse.o \
 X86LINUX64ICC/lmrcImageDensityNormalizationByImage.o \
@@ -605,6 +613,7 @@ X86LINUX64ICC/lmrcFFTExpression.sharedo \
 X86LINUX64ICC/lmrcFFTFGconj.sharedo \
 X86LINUX64ICC/lmrcFFTFxG.sharedo \
 X86LINUX64ICC/lmrcFFTInfo.sharedo \
+X86LINUX64ICC/lmrcImage3DPad.sharedo \
 X86LINUX64ICC/lmrcImage3DWindowing.sharedo \
 X86LINUX64ICC/lmrcImageAddValue.sharedo \
 X86LINUX64ICC/lmrcImageAsProbability.sharedo \
@@ -635,6 +644,7 @@ X86LINUX64ICC/lmrcImageCorrelationinSpace.sharedo \
 X86LINUX64ICC/lmrcImageCrystalCreate.sharedo \
 X86LINUX64ICC/lmrcImageDataMaxAndMinGetByImage.sharedo \
 X86LINUX64ICC/lmrcImageDataStraightCopy.sharedo \
+X86LINUX64ICC/lmrcImageDeconvolution.sharedo \
 X86LINUX64ICC/lmrcImageDensity.sharedo \
 X86LINUX64ICC/lmrcImageDensityInverse.sharedo \
 X86LINUX64ICC/lmrcImageDensityNormalizationByImage.sharedo \
@@ -755,6 +765,7 @@ lmrcFFTExpression.debugo \
 lmrcFFTFGconj.debugo \
 lmrcFFTFxG.debugo \
 lmrcFFTInfo.debugo \
+lmrcImage3DPad.debugo \
 lmrcImage3DWindowing.debugo \
 lmrcImageAddValue.debugo \
 lmrcImageAsProbability.debugo \
@@ -785,6 +796,7 @@ lmrcImageCorrelationinSpace.debugo \
 lmrcImageCrystalCreate.debugo \
 lmrcImageDataMaxAndMinGetByImage.debugo \
 lmrcImageDataStraightCopy.debugo \
+lmrcImageDeconvolution.debugo \
 lmrcImageDensity.debugo \
 lmrcImageDensityInverse.debugo \
 lmrcImageDensityNormalizationByImage.debugo \
@@ -903,6 +915,7 @@ X86LINUX64ICC/lmrcFFTExpression.debugo \
 X86LINUX64ICC/lmrcFFTFGconj.debugo \
 X86LINUX64ICC/lmrcFFTFxG.debugo \
 X86LINUX64ICC/lmrcFFTInfo.debugo \
+X86LINUX64ICC/lmrcImage3DPad.debugo \
 X86LINUX64ICC/lmrcImage3DWindowing.debugo \
 X86LINUX64ICC/lmrcImageAddValue.debugo \
 X86LINUX64ICC/lmrcImageAsProbability.debugo \
@@ -933,6 +946,7 @@ X86LINUX64ICC/lmrcImageCorrelationinSpace.debugo \
 X86LINUX64ICC/lmrcImageCrystalCreate.debugo \
 X86LINUX64ICC/lmrcImageDataMaxAndMinGetByImage.debugo \
 X86LINUX64ICC/lmrcImageDataStraightCopy.debugo \
+X86LINUX64ICC/lmrcImageDeconvolution.debugo \
 X86LINUX64ICC/lmrcImageDensity.debugo \
 X86LINUX64ICC/lmrcImageDensityInverse.debugo \
 X86LINUX64ICC/lmrcImageDensityNormalizationByImage.debugo \
@@ -1053,6 +1067,7 @@ lmrcFFTExpression.cudagdb.o \
 lmrcFFTFGconj.cudagdb.o \
 lmrcFFTFxG.cudagdb.o \
 lmrcFFTInfo.cudagdb.o \
+lmrcImage3DPad.cudagdb.o \
 lmrcImage3DWindowing.cudagdb.o \
 lmrcImageAddValue.cudagdb.o \
 lmrcImageAsProbability.cudagdb.o \
@@ -1083,6 +1098,7 @@ lmrcImageCorrelationinSpace.cudagdb.o \
 lmrcImageCrystalCreate.cudagdb.o \
 lmrcImageDataMaxAndMinGetByImage.cudagdb.o \
 lmrcImageDataStraightCopy.cudagdb.o \
+lmrcImageDeconvolution.cudagdb.o \
 lmrcImageDensity.cudagdb.o \
 lmrcImageDensityInverse.cudagdb.o \
 lmrcImageDensityNormalizationByImage.cudagdb.o \
@@ -1203,6 +1219,7 @@ X86LINUX64ICC/lmrcFFTExpression.cudagdb.o \
 X86LINUX64ICC/lmrcFFTFGconj.cudagdb.o \
 X86LINUX64ICC/lmrcFFTFxG.cudagdb.o \
 X86LINUX64ICC/lmrcFFTInfo.cudagdb.o \
+X86LINUX64ICC/lmrcImage3DPad.cudagdb.o \
 X86LINUX64ICC/lmrcImage3DWindowing.cudagdb.o \
 X86LINUX64ICC/lmrcImageAddValue.cudagdb.o \
 X86LINUX64ICC/lmrcImageAsProbability.cudagdb.o \
@@ -1233,6 +1250,7 @@ X86LINUX64ICC/lmrcImageCorrelationinSpace.cudagdb.o \
 X86LINUX64ICC/lmrcImageCrystalCreate.cudagdb.o \
 X86LINUX64ICC/lmrcImageDataMaxAndMinGetByImage.cudagdb.o \
 X86LINUX64ICC/lmrcImageDataStraightCopy.cudagdb.o \
+X86LINUX64ICC/lmrcImageDeconvolution.cudagdb.o \
 X86LINUX64ICC/lmrcImageDensity.cudagdb.o \
 X86LINUX64ICC/lmrcImageDensityInverse.cudagdb.o \
 X86LINUX64ICC/lmrcImageDensityNormalizationByImage.cudagdb.o \
index 51ff087..0a7f8dc 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.a and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.a differ
index 5142efb..fa12539 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.debug.a and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.debug.a differ
diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImage3DPad.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImage3DPad.c
new file mode 120000 (symlink)
index 0000000..de614e6
--- /dev/null
@@ -0,0 +1 @@
+../lmrcImage3DPad.c
\ No newline at end of file
diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImage3DPad.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImage3DPad.sharedo
new file mode 100644 (file)
index 0000000..213dbfa
Binary files /dev/null and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImage3DPad.sharedo differ
index d531426..21d8575 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAddValueCuda.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAddValueCuda.sharedo differ
index f0d8062..2056b47 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCVE.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCVE.sharedo differ
diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClusterAnalysis.cu b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClusterAnalysis.cu
new file mode 120000 (symlink)
index 0000000..7a0c013
--- /dev/null
@@ -0,0 +1 @@
+../lmrcImageClusterAnalysis.cu
\ No newline at end of file
index 410ad3d..75ec866 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClusterAnalysis.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClusterAnalysis.sharedo differ
diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDeconvolution.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDeconvolution.c
new file mode 120000 (symlink)
index 0000000..fdd19aa
--- /dev/null
@@ -0,0 +1 @@
+../lmrcImageDeconvolution.c
\ No newline at end of file
diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDeconvolution.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDeconvolution.sharedo
new file mode 100644 (file)
index 0000000..41c7378
Binary files /dev/null and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDeconvolution.sharedo differ
index 6ba45db..1331250 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageModelCreate.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageModelCreate.sharedo differ
index 3551c6c..2eba972 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMultiplying.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMultiplying.sharedo differ
index 0de61e3..54b64b1 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROInotChangeHeaderLength.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROInotChangeHeaderLength.sharedo differ
index 297d6a8..ef3f4ac 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRhoFiltering.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRhoFiltering.sharedo differ
index c79be19..0a88d39 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.sharedo differ
index ea47cd4..52baf8f 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTfunction.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTfunction.sharedo differ
index a61ae34..4670b6f 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTriming.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTriming.sharedo differ
index 8a44bd0..98d6f92 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETnormalizedMap.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETnormalizedMap.sharedo differ
index 55ed84f..09eacc8 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageGet.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageGet.sharedo differ
index ffc415a..764cd1c 100644 (file)
@@ -25,11 +25,11 @@ lpdb2mrc2d.o: lpdb2mrc2d.c /usr/include/stdlib.h /usr/include/features.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -59,11 +59,11 @@ lpdb2mrc3d.o: lpdb2mrc3d.c /usr/include/stdlib.h /usr/include/features.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -104,7 +104,7 @@ lpdbCoord.o: lpdbCoord.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -114,10 +114,12 @@ lpdbCoord.o: lpdbCoord.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 lpdbCoordInfo.o: lpdbCoordInfo.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -128,10 +130,9 @@ lpdbCoordInfo.o: lpdbCoordInfo.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h lpdbCoordInfo.h \
- ../inc/pdbFile.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ ../inc/pdbFile.h /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
@@ -157,11 +158,12 @@ lpdbSelectedAtom.o: lpdbSelectedAtom.c /usr/include/stdio.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -178,9 +180,11 @@ lpdbSelectedAtom.o: lpdbSelectedAtom.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Matrix3D.h lpdbSelectedAtom.h \
  ../inc/pdbFile.h
 lpdbSurface.o: lpdbSurface.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -191,10 +195,9 @@ lpdbSurface.o: lpdbSurface.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h pdbInfoGet.h \
- ../inc/pdbFile.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ ../inc/pdbFile.h /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
@@ -311,9 +314,11 @@ pdbGet.o: pdbGet.c /usr/include/string.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 pdbInfoGet.o: pdbInfoGet.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -324,10 +329,9 @@ pdbInfoGet.o: pdbInfoGet.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h pdbInfoGet.h \
- ../inc/pdbFile.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ ../inc/pdbFile.h /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
@@ -354,7 +358,7 @@ pdbRotation.o: pdbRotation.c ../inc/pdbFile.h /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -417,7 +421,7 @@ pdbSet.o: pdbSet.c ../inc/pdbFile.h /usr/include/stdio.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -463,26 +467,15 @@ pdbTrans.o: pdbTrans.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/eosCuda.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/cuda_runtime.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/host_config.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/builtin_types.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/device_types.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/host_defines.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/driver_types.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/surface_types.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/texture_types.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/vector_types.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/channel_descriptor.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/cuda_runtime_api.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/cuda_device_runtime_api.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/driver_functions.h \
- /home/people/tacyas/Eos/util/X86LINUX64/cuda/include/vector_functions.h \
  /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/Vector.h
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Memory.h
 pdbUtil.o: pdbUtil.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -493,12 +486,9 @@ pdbUtil.o: pdbUtil.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/xlocale.h /home/people/tacyas/Eos/include/Memory.h \
- /usr/include/stdio.h /usr/include/bits/types.h \
- /usr/include/bits/typesizes.h /usr/include/libio.h \
- /usr/include/_G_config.h /usr/include/wchar.h \
+ /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
index 0b75a9e..57953c1 100644 (file)
Binary files a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/libpdbFile.a and b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/libpdbFile.a differ
index ac8bbe6..e9033cb 100644 (file)
Binary files a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/libpdbFile.debug.a and b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/libpdbFile.debug.a differ
index 9ee0504..b8a81d0 100755 (executable)
Binary files a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/libpdbFile.so and b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/libpdbFile.so differ
index 9fcb37c..96268a4 100644 (file)
Binary files a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdb2mrc2d.sharedo and b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdb2mrc2d.sharedo differ
index 04dff4f..7069df2 100644 (file)
Binary files a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdb2mrc3d.sharedo and b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdb2mrc3d.sharedo differ
index 932ac7c..37356c7 100644 (file)
Binary files a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbTransCuda.sharedo and b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbTransCuda.sharedo differ
index c5eb5bd..1283c70 100644 (file)
@@ -11,11 +11,11 @@ lFRET.o: lFRET.c /usr/include/stdlib.h /usr/include/features.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 3df4bac..b778e3d 100644 (file)
Binary files a/src/Objects/DataManip/simulation/src/X86LINUX64ICC/lFRET.sharedo and b/src/Objects/DataManip/simulation/src/X86LINUX64ICC/lFRET.sharedo differ
index 683de8f..371f4d6 100644 (file)
Binary files a/src/Objects/DataManip/simulation/src/X86LINUX64ICC/libsimulation.a and b/src/Objects/DataManip/simulation/src/X86LINUX64ICC/libsimulation.a differ
index 43fe344..47648ed 100644 (file)
Binary files a/src/Objects/DataManip/simulation/src/X86LINUX64ICC/libsimulation.debug.a and b/src/Objects/DataManip/simulation/src/X86LINUX64ICC/libsimulation.debug.a differ
index b360404..0da87cf 100755 (executable)
Binary files a/src/Objects/DataManip/simulation/src/X86LINUX64ICC/libsimulation.so and b/src/Objects/DataManip/simulation/src/X86LINUX64ICC/libsimulation.so differ
index 6a1b981..4395714 100644 (file)
@@ -40,11 +40,12 @@ tgaFileRead.o: tgaFileRead.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 604fd00..4d605e6 100644 (file)
Binary files a/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/libtgaFile.a and b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/libtgaFile.a differ
index 7da3bc5..ccb5752 100644 (file)
Binary files a/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/libtgaFile.debug.a and b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/libtgaFile.debug.a differ
index ab44fee..b06a098 100755 (executable)
Binary files a/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/libtgaFile.so and b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/libtgaFile.so differ
index 285d9d3..ac5226f 100644 (file)
@@ -44,7 +44,8 @@ lAllCommonLineCalculation.o: lAllCommonLineCalculation.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -64,7 +65,6 @@ lAllCommonLineCalculation.o: lAllCommonLineCalculation.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h lCommonLineCalculation.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 lAngularWeightCalculation.o: lAngularWeightCalculation.c \
  lmrcImageOrientationSearchBySimultaneousMinimization.h \
@@ -81,7 +81,8 @@ lAngularWeightCalculation.o: lAngularWeightCalculation.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -101,13 +102,14 @@ lAngularWeightCalculation.o: lAngularWeightCalculation.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h lCommonLineCalculation.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 lCommonLineCalculation.o: lCommonLineCalculation.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -118,10 +120,9 @@ lCommonLineCalculation.o: lCommonLineCalculation.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- lCommonLineCalculation.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ lCommonLineCalculation.h /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
@@ -131,7 +132,6 @@ lCommonLineCalculation.o: lCommonLineCalculation.c \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h
@@ -150,7 +150,8 @@ lCommonLineDataSetInPlaneRotation.o: lCommonLineDataSetInPlaneRotation.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -170,7 +171,6 @@ lCommonLineDataSetInPlaneRotation.o: lCommonLineDataSetInPlaneRotation.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h lCommonLineCalculation.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 lCommonLinesDataSet.o: lCommonLinesDataSet.c \
  lmrcImageOrientationSearchBySimultaneousMinimization.h \
@@ -187,7 +187,8 @@ lCommonLinesDataSet.o: lCommonLinesDataSet.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -207,7 +208,6 @@ lCommonLinesDataSet.o: lCommonLinesDataSet.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h lCommonLineCalculation.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 lDescartesIntoPolar.o: lDescartesIntoPolar.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
@@ -229,7 +229,8 @@ lDescartesIntoPolar.o: lDescartesIntoPolar.c /usr/include/stdio.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -381,7 +382,8 @@ lFETOrientationSearchByFeatureAlignmentInitSet.o: \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -402,7 +404,7 @@ lFETOrientationSearchByFeatureAlignmentInitSet.o: \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  lFETmapOrientationSearchBySimultaneousFitting.h \
- /home/people/tacyas/Eos/include/Random.h /usr/include/xlocale.h
+ /home/people/tacyas/Eos/include/Random.h
 lFETOrientationSearchByFeatureAlignmentSphere.o: \
  lFETOrientationSearchByFeatureAlignmentSphere.c \
  lFETOrientationSearchByFeatureAlignment.h /usr/include/stdio.h \
@@ -425,7 +427,8 @@ lFETOrientationSearchByFeatureAlignmentSphere.o: \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -540,7 +543,8 @@ lInitialDataFileRead.o: lInitialDataFileRead.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -560,7 +564,6 @@ lInitialDataFileRead.o: lInitialDataFileRead.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h lCommonLineCalculation.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 lJcalulation.o: lJcalulation.c \
  lmrcImageOrientationSearchBySimultaneousMinimization.h \
@@ -577,7 +580,8 @@ lJcalulation.o: lJcalulation.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -597,7 +601,6 @@ lJcalulation.o: lJcalulation.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h lCommonLineCalculation.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 lLcalculation.o: lLcalculation.c \
  lmrcImageOrientationSearchBySimultaneousMinimization.h \
@@ -614,7 +617,8 @@ lLcalculation.o: lLcalculation.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -634,7 +638,6 @@ lLcalculation.o: lLcalculation.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h lCommonLineCalculation.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/lmrcImageSinogram.h \
  /home/people/tacyas/Eos/include/mrcImage.h
@@ -653,7 +656,8 @@ lPlaneRotationAngleSet.o: lPlaneRotationAngleSet.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -673,7 +677,6 @@ lPlaneRotationAngleSet.o: lPlaneRotationAngleSet.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h lCommonLineCalculation.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 lllDataSeparationInfoPrint.o: lllDataSeparationInfoPrint.c
 lllDataSeparationInfoRead.o: lllDataSeparationInfoRead.c lllExtract.h \
@@ -690,7 +693,8 @@ lllDataSeparationInfoRead.o: lllDataSeparationInfoRead.c lllExtract.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -728,7 +732,8 @@ lllDataSeparationInfoSet.o: lllDataSeparationInfoSet.c lllExtract.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -744,10 +749,12 @@ lllDataSeparationInfoSet.o: lllDataSeparationInfoSet.c lllExtract.h \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/lllDatarMaxLimit.h
 lllDatarMaxLimitForSeparation.o: lllDatarMaxLimitForSeparation.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -758,13 +765,12 @@ lllDatarMaxLimitForSeparation.o: lllDatarMaxLimitForSeparation.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/stdlib.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/types.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/time.h /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h lllExtract.h \
@@ -782,9 +788,11 @@ lllDatarMaxLimitForSeparation.o: lllDatarMaxLimitForSeparation.c \
  /home/people/tacyas/Eos/include/llData.h \
  /home/people/tacyas/Eos/include/lllDatarMaxLimit.h
 lllExtract.o: lllExtract.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -796,7 +804,6 @@ lllExtract.o: lllExtract.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -862,11 +869,11 @@ lllExtractWithSeparation.o: lllExtractWithSeparation.c \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -971,10 +978,12 @@ lmrc2Dto3D.o: lmrc2Dto3D.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/./lmrcImageRhoFiltering.h
 lmrc2Dto3DSIRT.o: lmrc2Dto3DSIRT.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -985,10 +994,9 @@ lmrc2Dto3DSIRT.o: lmrc2Dto3DSIRT.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h lmrc3Dto2D.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
@@ -998,7 +1006,6 @@ lmrc2Dto3DSIRT.o: lmrc2Dto3DSIRT.c \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
@@ -1085,7 +1092,7 @@ lmrcImageFileListAndEulerAngleDataRead.o: \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
@@ -1107,7 +1114,8 @@ lmrcImageOneLineGet.o: lmrcImageOneLineGet.c \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -1127,14 +1135,15 @@ lmrcImageOneLineGet.o: lmrcImageOneLineGet.c \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/genUtil.h lCommonLineCalculation.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/Matrix3D.h
 lmrcImageSinogramCorrelationAdditionalWeight.o: \
  lmrcImageSinogramCorrelationAdditionalWeight.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -1147,7 +1156,6 @@ lmrcImageSinogramCorrelationAdditionalWeight.o: \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/./lmrcImageSinogram.h \
  /home/people/tacyas/Eos/include/./mrcImage.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 044326b..92edc1a 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lEvaluateCorrelationMapwithCommonLine.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lEvaluateCorrelationMapwithCommonLine.sharedo differ
index e99ada4..833994b 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignment.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignment.sharedo differ
index 92c3c49..4b9cbff 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETmapOrientationSearchBySimultaneousFitting.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETmapOrientationSearchBySimultaneousFitting.sharedo differ
index f5b47da..df62e65 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETsmallMapSetCreate_forSimultaneousMinimization.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETsmallMapSetCreate_forSimultaneousMinimization.sharedo differ
index 796d78e..e49bc26 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lLcalculation.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lLcalculation.sharedo differ
index f86b12a..e737ebf 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.a and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.a differ
index be50c16..176c022 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.debug.a and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.debug.a differ
index 8e4e8ea..d37d8a9 100755 (executable)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.so and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.so differ
index b8f94a4..900ef34 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3D.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3D.sharedo differ
index 88103b1..17d70cb 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3DSIRT.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3DSIRT.sharedo differ
index 4860362..fd99c7c 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc3Dto2D.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc3Dto2D.sharedo differ
index 205779b..41103c8 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageFileListAndEulerAngleDataRead.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageFileListAndEulerAngleDataRead.sharedo differ
index b8e6d49..8123d4d 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageSinogramCorrelationAdditionalWeight.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageSinogramCorrelationAdditionalWeight.sharedo differ
index c5eaa8e..336dce2 100644 (file)
@@ -26,16 +26,18 @@ lmrcNeuralNet.o: lmrcNeuralNet.c /home/people/tacyas/Eos/include/Memory.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Array.h
 neuralNet.o: neuralNet.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -47,7 +49,6 @@ neuralNet.o: neuralNet.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
@@ -58,5 +59,4 @@ neuralNet.o: neuralNet.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h NeuralNet.h \
- /usr/include/xlocale.h
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h NeuralNet.h
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index c125776..5322d37 100644 (file)
Binary files a/src/Objects/General/AI/src/X86LINUX64ICC/libAI.a and b/src/Objects/General/AI/src/X86LINUX64ICC/libAI.a differ
index 6e5097b..118d568 100644 (file)
Binary files a/src/Objects/General/AI/src/X86LINUX64ICC/libAI.debug.a and b/src/Objects/General/AI/src/X86LINUX64ICC/libAI.debug.a differ
index 38f7d9d..763d7a1 100755 (executable)
Binary files a/src/Objects/General/AI/src/X86LINUX64ICC/libAI.so and b/src/Objects/General/AI/src/X86LINUX64ICC/libAI.so differ
index 80edcac..7b49cc0 100644 (file)
@@ -44,11 +44,12 @@ arrayPCA.o: arrayPCA.c ../inc/Array.h /usr/include/stdio.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/nr2.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index d49865f..b2616c8 100644 (file)
Binary files a/src/Objects/General/Array/src/X86LINUX64ICC/libArray.a and b/src/Objects/General/Array/src/X86LINUX64ICC/libArray.a differ
index 8804a30..abd5c1b 100644 (file)
Binary files a/src/Objects/General/Array/src/X86LINUX64ICC/libArray.debug.a and b/src/Objects/General/Array/src/X86LINUX64ICC/libArray.debug.a differ
index b391533..bcb36e2 100755 (executable)
Binary files a/src/Objects/General/Array/src/X86LINUX64ICC/libArray.so and b/src/Objects/General/Array/src/X86LINUX64ICC/libArray.so differ
index ec688c0..540d28a 100644 (file)
@@ -12,11 +12,12 @@ clusterLogAnalysis.o: clusterLogAnalysis.c /usr/include/stdio.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -63,14 +64,12 @@ clusterLogRead.o: clusterLogRead.c /usr/include/stdio.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/values.h \
+ /home/people/tacyas/Eos/include/Memory.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/Memory.h /usr/include/stdlib.h \
+ /usr/include/bits/posix2_lim.h /usr/include/stdlib.h \
  /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
  /usr/include/endian.h /usr/include/bits/endian.h \
  /usr/include/bits/byteswap.h /usr/include/sys/types.h \
@@ -79,10 +78,12 @@ clusterLogRead.o: clusterLogRead.c /usr/include/stdio.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/String.h \
  ../inc/Cluster.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
@@ -90,10 +91,12 @@ clusterLogRead.o: clusterLogRead.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Array.h
 clusterLogUtil.o: clusterLogUtil.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -105,7 +108,6 @@ clusterLogUtil.o: clusterLogUtil.c \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 989eec4..659ad7d 100644 (file)
Binary files a/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogRead.sharedo and b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogRead.sharedo differ
index 1184920..23d02bd 100644 (file)
Binary files a/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogUtil.sharedo and b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogUtil.sharedo differ
index 71f7c30..eb90bcf 100644 (file)
Binary files a/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogWrite.sharedo and b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogWrite.sharedo differ
index f7d56d4..eed7b18 100644 (file)
Binary files a/src/Objects/General/Cluster/src/X86LINUX64ICC/libCluster.a and b/src/Objects/General/Cluster/src/X86LINUX64ICC/libCluster.a differ
index b3aae86..0720471 100644 (file)
Binary files a/src/Objects/General/Cluster/src/X86LINUX64ICC/libCluster.debug.a and b/src/Objects/General/Cluster/src/X86LINUX64ICC/libCluster.debug.a differ
index aacce1c..94bbb76 100755 (executable)
Binary files a/src/Objects/General/Cluster/src/X86LINUX64ICC/libCluster.so and b/src/Objects/General/Cluster/src/X86LINUX64ICC/libCluster.so differ
index 332416c..a9741d8 100644 (file)
@@ -36,11 +36,11 @@ crystalInfoFile.o: crystalInfoFile.c /usr/include/stdlib.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -76,11 +76,12 @@ crystalUtil.o: crystalUtil.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 00f5a1e..9d41e76 100644 (file)
Binary files a/src/Objects/General/Crystal/src/X86LINUX64ICC/libCrystal.a and b/src/Objects/General/Crystal/src/X86LINUX64ICC/libCrystal.a differ
index fc9e6f3..b5408d8 100644 (file)
Binary files a/src/Objects/General/Crystal/src/X86LINUX64ICC/libCrystal.debug.a and b/src/Objects/General/Crystal/src/X86LINUX64ICC/libCrystal.debug.a differ
index 92e5405..6781421 100755 (executable)
Binary files a/src/Objects/General/Crystal/src/X86LINUX64ICC/libCrystal.so and b/src/Objects/General/Crystal/src/X86LINUX64ICC/libCrystal.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 962d50c..289518c 100644 (file)
Binary files a/src/Objects/General/File/src/X86LINUX64ICC/libFile.a and b/src/Objects/General/File/src/X86LINUX64ICC/libFile.a differ
index 296d63f..0106396 100644 (file)
Binary files a/src/Objects/General/File/src/X86LINUX64ICC/libFile.debug.a and b/src/Objects/General/File/src/X86LINUX64ICC/libFile.debug.a differ
index 0452ab5..548459d 100755 (executable)
Binary files a/src/Objects/General/File/src/X86LINUX64ICC/libFile.so and b/src/Objects/General/File/src/X86LINUX64ICC/libFile.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 7218f1b..1aa3fc1 100644 (file)
Binary files a/src/Objects/General/Map2D/src/X86LINUX64ICC/libMap2D.a and b/src/Objects/General/Map2D/src/X86LINUX64ICC/libMap2D.a differ
index b2ac849..8d1a665 100644 (file)
Binary files a/src/Objects/General/Map2D/src/X86LINUX64ICC/libMap2D.debug.a and b/src/Objects/General/Map2D/src/X86LINUX64ICC/libMap2D.debug.a differ
index eb948f3..816073b 100755 (executable)
Binary files a/src/Objects/General/Map2D/src/X86LINUX64ICC/libMap2D.so and b/src/Objects/General/Map2D/src/X86LINUX64ICC/libMap2D.so differ
index 0ca6548..177553d 100644 (file)
@@ -29,7 +29,8 @@ matrix3DEulerAngleGet.o: matrix3DEulerAngleGet.c /usr/include/stdio.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -56,11 +57,12 @@ matrix3DEulerAngleSet.o: matrix3DEulerAngleSet.c /usr/include/stdlib.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -100,11 +102,12 @@ matrix3DFile.o: matrix3DFile.c /usr/include/stdio.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -134,13 +137,20 @@ matrix3DMultiply.o: matrix3DMultiply.c ../inc/Matrix3D.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/Array.h
-matrix3DMultiplyMatrix.o: matrix3DMultiplyMatrix.c ../inc/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h /usr/include/stdio.h \
+matrix3DMultiplyMatrix.o: matrix3DMultiplyMatrix.c /usr/include/stdlib.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
  /usr/include/gnu/stubs-64.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
+ /usr/include/endian.h /usr/include/bits/endian.h \
+ /usr/include/bits/byteswap.h /usr/include/sys/types.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/time.h /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h ../inc/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h /usr/include/stdio.h \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index c50ce03..4beca8c 100644 (file)
Binary files a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/libMatrix3D.a and b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/libMatrix3D.a differ
index 2b7d291..0df4291 100644 (file)
Binary files a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/libMatrix3D.debug.a and b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/libMatrix3D.debug.a differ
index 176666c..d100020 100755 (executable)
Binary files a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/libMatrix3D.so and b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/libMatrix3D.so differ
diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DMultiplyMatrix.sharedo b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DMultiplyMatrix.sharedo
new file mode 100644 (file)
index 0000000..c39d344
Binary files /dev/null and b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DMultiplyMatrix.sharedo differ
index a64c649..cde4ea7 100644 (file)
@@ -24,10 +24,12 @@ memoryAllocate.o: memoryAllocate.c /usr/include/stdio.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h
 memoryByteSwap.o: memoryByteSwap.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -38,10 +40,9 @@ memoryByteSwap.o: memoryByteSwap.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  ../inc/Memory.h /usr/include/stdlib.h /usr/include/bits/waitflags.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index ea52400..6e2cf9e 100644 (file)
Binary files a/src/Objects/General/Memory/src/X86LINUX64ICC/libMemory.a and b/src/Objects/General/Memory/src/X86LINUX64ICC/libMemory.a differ
index 2161f20..1adefd5 100644 (file)
Binary files a/src/Objects/General/Memory/src/X86LINUX64ICC/libMemory.debug.a and b/src/Objects/General/Memory/src/X86LINUX64ICC/libMemory.debug.a differ
index d4e0be4..6b38d37 100755 (executable)
Binary files a/src/Objects/General/Memory/src/X86LINUX64ICC/libMemory.so and b/src/Objects/General/Memory/src/X86LINUX64ICC/libMemory.so differ
index 98b8620..eaa633b 100644 (file)
Binary files a/src/Objects/General/Memory/src/X86LINUX64ICC/memoryAllocate.sharedo and b/src/Objects/General/Memory/src/X86LINUX64ICC/memoryAllocate.sharedo differ
index 87a39b8..2b9719f 100644 (file)
Binary files a/src/Objects/General/Memory/src/X86LINUX64ICC/memoryByteSwap.sharedo and b/src/Objects/General/Memory/src/X86LINUX64ICC/memoryByteSwap.sharedo differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 5e727f3..7dce546 100644 (file)
Binary files a/src/Objects/General/PVM/src/X86LINUX64ICC/libPVM.a and b/src/Objects/General/PVM/src/X86LINUX64ICC/libPVM.a differ
index 9e5e1e3..074422d 100644 (file)
Binary files a/src/Objects/General/PVM/src/X86LINUX64ICC/libPVM.debug.a and b/src/Objects/General/PVM/src/X86LINUX64ICC/libPVM.debug.a differ
index 4f04a87..4d05596 100755 (executable)
Binary files a/src/Objects/General/PVM/src/X86LINUX64ICC/libPVM.so and b/src/Objects/General/PVM/src/X86LINUX64ICC/libPVM.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 13b29c9..0b39c04 100644 (file)
Binary files a/src/Objects/General/Random/src/X86LINUX64ICC/libRandom.a and b/src/Objects/General/Random/src/X86LINUX64ICC/libRandom.a differ
index 78edda2..c30af52 100644 (file)
Binary files a/src/Objects/General/Random/src/X86LINUX64ICC/libRandom.debug.a and b/src/Objects/General/Random/src/X86LINUX64ICC/libRandom.debug.a differ
index ddd7884..b666014 100755 (executable)
Binary files a/src/Objects/General/Random/src/X86LINUX64ICC/libRandom.so and b/src/Objects/General/Random/src/X86LINUX64ICC/libRandom.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index ea82a1b..3f57390 100644 (file)
Binary files a/src/Objects/General/Socket/src/X86LINUX64ICC/libSocket.a and b/src/Objects/General/Socket/src/X86LINUX64ICC/libSocket.a differ
index 703a26a..a180d6c 100644 (file)
Binary files a/src/Objects/General/Socket/src/X86LINUX64ICC/libSocket.debug.a and b/src/Objects/General/Socket/src/X86LINUX64ICC/libSocket.debug.a differ
index eb3fe55..8cdba08 100755 (executable)
Binary files a/src/Objects/General/Socket/src/X86LINUX64ICC/libSocket.so and b/src/Objects/General/Socket/src/X86LINUX64ICC/libSocket.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index e15e2ff..084fe34 100644 (file)
Binary files a/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/libSpecialNumber.a and b/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/libSpecialNumber.a differ
index 64c27e7..0924aa0 100644 (file)
Binary files a/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/libSpecialNumber.debug.a and b/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/libSpecialNumber.debug.a differ
index 3c6b05f..9257cd2 100755 (executable)
Binary files a/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/libSpecialNumber.so and b/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/libSpecialNumber.so differ
index 521db37..c7d2bc5 100644 (file)
@@ -49,9 +49,11 @@ stringGetFromFile.o: stringGetFromFile.c /usr/include/stdio.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/String.h
 stringIsSame.o: stringIsSame.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -62,10 +64,9 @@ stringIsSame.o: stringIsSame.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/String.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h
 stringUtil.o: stringUtil.c /home/people/tacyas/Eos/include/Memory.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 31b653f..97c099d 100644 (file)
Binary files a/src/Objects/General/String/src/X86LINUX64ICC/libString.a and b/src/Objects/General/String/src/X86LINUX64ICC/libString.a differ
index 506920d..2fdd524 100644 (file)
Binary files a/src/Objects/General/String/src/X86LINUX64ICC/libString.debug.a and b/src/Objects/General/String/src/X86LINUX64ICC/libString.debug.a differ
index 3cb295d..d4abbc6 100755 (executable)
Binary files a/src/Objects/General/String/src/X86LINUX64ICC/libString.so and b/src/Objects/General/String/src/X86LINUX64ICC/libString.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index cbc09bd..7318633 100644 (file)
Binary files a/src/Objects/General/Vector/src/X86LINUX64ICC/libVector.a and b/src/Objects/General/Vector/src/X86LINUX64ICC/libVector.a differ
index 7f59a02..eed6428 100644 (file)
Binary files a/src/Objects/General/Vector/src/X86LINUX64ICC/libVector.debug.a and b/src/Objects/General/Vector/src/X86LINUX64ICC/libVector.debug.a differ
index f0731b3..8460e53 100755 (executable)
Binary files a/src/Objects/General/Vector/src/X86LINUX64ICC/libVector.so and b/src/Objects/General/Vector/src/X86LINUX64ICC/libVector.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 0780ce4..0270468 100644 (file)
Binary files a/src/Objects/General/dummy/src/X86LINUX64ICC/libdummy.a and b/src/Objects/General/dummy/src/X86LINUX64ICC/libdummy.a differ
index 7c2469c..bac1de7 100644 (file)
Binary files a/src/Objects/General/dummy/src/X86LINUX64ICC/libdummy.debug.a and b/src/Objects/General/dummy/src/X86LINUX64ICC/libdummy.debug.a differ
index 92161db..1cce19a 100755 (executable)
Binary files a/src/Objects/General/dummy/src/X86LINUX64ICC/libdummy.so and b/src/Objects/General/dummy/src/X86LINUX64ICC/libdummy.so differ
index 2a98952..1e80d50 100644 (file)
Binary files a/src/Objects/General/eosCuda/src/X86LINUX64ICC/eosCuda.sharedo and b/src/Objects/General/eosCuda/src/X86LINUX64ICC/eosCuda.sharedo differ
index e124b2f..9493809 100644 (file)
Binary files a/src/Objects/General/eosCuda/src/X86LINUX64ICC/libeosCuda.a and b/src/Objects/General/eosCuda/src/X86LINUX64ICC/libeosCuda.a differ
index 4b7df18..c5ae40a 100755 (executable)
Binary files a/src/Objects/General/eosCuda/src/X86LINUX64ICC/libeosCuda.so and b/src/Objects/General/eosCuda/src/X86LINUX64ICC/libeosCuda.so differ
diff --git a/src/Objects/General/eosFunc/src/X86LINUX64ICC/.Depend b/src/Objects/General/eosFunc/src/X86LINUX64ICC/.Depend
new file mode 100644 (file)
index 0000000..e2666fa
--- /dev/null
@@ -0,0 +1,13 @@
+X86LINUX64ICC/eosFunc.o:eosFunc.o
+eosFunc.o: eosFunc.c /usr/include/math.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/eosFunc.h /usr/include/stdio.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h
diff --git a/src/Objects/General/eosFunc/src/X86LINUX64ICC/.Source b/src/Objects/General/eosFunc/src/X86LINUX64ICC/.Source
new file mode 100644 (file)
index 0000000..f7d5bdd
--- /dev/null
@@ -0,0 +1,28 @@
+SRC = \
+eosFunc.c \
+
+OBJ = \
+eosFunc.o \
+
+SHAREDOBJ = \
+eosFunc.sharedo \
+
+REALOBJ = \
+X86LINUX64ICC/eosFunc.o \
+
+REALSHAREDOBJ = \
+X86LINUX64ICC/eosFunc.sharedo \
+
+OBJDEBUG = \
+eosFunc.debugo \
+
+REALOBJDEBUG = \
+X86LINUX64ICC/eosFunc.debugo \
+
+OBJCUDAGDB = \
+eosFunc.cudagdb.o \
+
+REALOBJCUDAGDB = \
+X86LINUX64ICC/eosFunc.cudagdb.o \
+
+
diff --git a/src/Objects/General/eosFunc/src/X86LINUX64ICC/Makefile b/src/Objects/General/eosFunc/src/X86LINUX64ICC/Makefile
new file mode 100755 (executable)
index 0000000..a429553
--- /dev/null
@@ -0,0 +1,36 @@
+SHELL=/bin/ksh
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineObject.inc
+
+include .Source
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.CHeader
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.CCHeader
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.Wish
+
+LIBNAME=lib$(OBJECTNAME).a
+SHAREDLIB=lib$(OBJECTNAME).so
+LIBNAMEDEBUG=lib$(OBJECTNAME).debug.a
+LIBNAMECUDAGDB=lib$(OBJECTNAME).cudagdb.a
+
+$(LIBNAME): $(OBJ)
+       @echo LIBNAME:$(LIBNAME)
+       $(AR) rs $(LIBNAME) $(OBJ)
+
+$(SHAREDLIB): $(SHAREDOBJ)
+       @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
+       $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
+
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
+$(LIBNAMEDEBUG): $(OBJDEBUG)
+       @echo LIBNAME:$(LIBNAMEDEBUG)
+       $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
+
+$(LIBNAMECUDAGDB): $(OBJCUDAGDB)
+       @echo LIBNAME:$(LIBNAMECUDAGDB)
+       $(AR) rs $(LIBNAMECUDAGDB) $(OBJCUDAGDB)
+
+include .Depend
+
diff --git a/src/Objects/General/eosFunc/src/X86LINUX64ICC/X86LINUX64ICC b/src/Objects/General/eosFunc/src/X86LINUX64ICC/X86LINUX64ICC
new file mode 120000 (symlink)
index 0000000..e24dcb4
--- /dev/null
@@ -0,0 +1 @@
+../../../../../hostdepend/X86LINUX64ICC/src/Objects/General/eosFunc/src/X86LINUX64ICC
\ No newline at end of file
diff --git a/src/Objects/General/eosFunc/src/X86LINUX64ICC/eosFunc.c b/src/Objects/General/eosFunc/src/X86LINUX64ICC/eosFunc.c
new file mode 120000 (symlink)
index 0000000..e907144
--- /dev/null
@@ -0,0 +1 @@
+../eosFunc.c
\ No newline at end of file
diff --git a/src/Objects/General/eosFunc/src/X86LINUX64ICC/eosFunc.sharedo b/src/Objects/General/eosFunc/src/X86LINUX64ICC/eosFunc.sharedo
new file mode 100644 (file)
index 0000000..3990e4d
Binary files /dev/null and b/src/Objects/General/eosFunc/src/X86LINUX64ICC/eosFunc.sharedo differ
diff --git a/src/Objects/General/eosFunc/src/X86LINUX64ICC/libeosFunc.a b/src/Objects/General/eosFunc/src/X86LINUX64ICC/libeosFunc.a
new file mode 100644 (file)
index 0000000..2d05214
Binary files /dev/null and b/src/Objects/General/eosFunc/src/X86LINUX64ICC/libeosFunc.a differ
diff --git a/src/Objects/General/eosFunc/src/X86LINUX64ICC/libeosFunc.debug.a b/src/Objects/General/eosFunc/src/X86LINUX64ICC/libeosFunc.debug.a
new file mode 100644 (file)
index 0000000..00b3742
Binary files /dev/null and b/src/Objects/General/eosFunc/src/X86LINUX64ICC/libeosFunc.debug.a differ
diff --git a/src/Objects/General/eosFunc/src/X86LINUX64ICC/libeosFunc.so b/src/Objects/General/eosFunc/src/X86LINUX64ICC/libeosFunc.so
new file mode 100755 (executable)
index 0000000..be6da90
Binary files /dev/null and b/src/Objects/General/eosFunc/src/X86LINUX64ICC/libeosFunc.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index edca506..98ff630 100644 (file)
@@ -25,10 +25,12 @@ eosPThread.o: eosPThread.c ../inc/eosPThread.h /usr/include/stdio.h \
  /usr/include/asm/errno.h /usr/include/asm-generic/errno.h \
  /usr/include/asm-generic/errno-base.h
 eosPThreadCreate.o: eosPThreadCreate.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -39,10 +41,9 @@ eosPThreadCreate.o: eosPThreadCreate.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- ../inc/eosPThread.h /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ ../inc/eosPThread.h /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
@@ -53,7 +54,7 @@ eosPThreadCreate.o: eosPThreadCreate.c \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
  /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/xlocale.h /usr/include/bits/setjmp.h /usr/include/errno.h \
+ /usr/include/bits/setjmp.h /usr/include/errno.h \
  /usr/include/bits/errno.h /usr/include/linux/errno.h \
  /usr/include/asm/errno.h /usr/include/asm-generic/errno.h \
  /usr/include/asm-generic/errno-base.h
@@ -106,10 +107,12 @@ eosPThreadJoin.o: eosPThreadJoin.c ../inc/eosPThread.h \
  /usr/include/asm/errno.h /usr/include/asm-generic/errno.h \
  /usr/include/asm-generic/errno-base.h
 eosPThreadMutex.o: eosPThreadMutex.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -123,11 +126,10 @@ eosPThreadMutex.o: eosPThreadMutex.c \
  /usr/include/pthread.h /usr/include/endian.h /usr/include/bits/endian.h \
  /usr/include/bits/byteswap.h /usr/include/sched.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/time.h /usr/include/bits/sched.h /usr/include/bits/time.h \
- /usr/include/xlocale.h /usr/include/bits/pthreadtypes.h \
/usr/include/bits/setjmp.h ../inc/eosPThread.h /usr/include/stdio.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/bits/setjmp.h \
../inc/eosPThread.h /usr/include/stdio.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 7d62aed..e825105 100644 (file)
Binary files a/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.a and b/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.a differ
index 49c0a2b..38eb902 100644 (file)
Binary files a/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.debug.a and b/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.debug.a differ
index 0da8ff9..cef1213 100755 (executable)
Binary files a/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.so and b/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.so differ
index d8faa86..35e9475 100644 (file)
@@ -1,2 +1,94 @@
+X86LINUX64ICC/eosPointCopy.o:eosPointCopy.o
 X86LINUX64ICC/eosPointRead.o:eosPointRead.o
-eosPointRead.o: eosPointRead.c
+X86LINUX64ICC/eosPointRotate.o:eosPointRotate.o
+X86LINUX64ICC/eosPointUtil.o:eosPointUtil.o
+X86LINUX64ICC/eosPointWrite.o:eosPointWrite.o
+eosPointCopy.o: eosPointCopy.c ../inc/eosPoint.h /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/Vector.h
+eosPointRead.o: eosPointRead.c /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h /usr/include/stdio.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ ../inc/eosPoint.h /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/Vector.h
+eosPointRotate.o: eosPointRotate.c ../inc/eosPoint.h /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/Vector.h
+eosPointUtil.o: eosPointUtil.c /home/people/tacyas/Eos/include/Memory.h \
+ /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h /usr/include/stdlib.h \
+ /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
+ /usr/include/endian.h /usr/include/bits/endian.h \
+ /usr/include/bits/byteswap.h /usr/include/sys/types.h \
+ /usr/include/time.h /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h ../inc/eosPoint.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/Vector.h
+eosPointWrite.o: eosPointWrite.c ../inc/eosPoint.h /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/Vector.h
index 61f6e89..954c066 100644 (file)
@@ -1,28 +1,64 @@
 SRC = \
+eosPointCopy.c \
 eosPointRead.c \
+eosPointRotate.c \
+eosPointUtil.c \
+eosPointWrite.c \
 
 OBJ = \
+eosPointCopy.o \
 eosPointRead.o \
+eosPointRotate.o \
+eosPointUtil.o \
+eosPointWrite.o \
 
 SHAREDOBJ = \
+eosPointCopy.sharedo \
 eosPointRead.sharedo \
+eosPointRotate.sharedo \
+eosPointUtil.sharedo \
+eosPointWrite.sharedo \
 
 REALOBJ = \
+X86LINUX64ICC/eosPointCopy.o \
 X86LINUX64ICC/eosPointRead.o \
+X86LINUX64ICC/eosPointRotate.o \
+X86LINUX64ICC/eosPointUtil.o \
+X86LINUX64ICC/eosPointWrite.o \
 
 REALSHAREDOBJ = \
+X86LINUX64ICC/eosPointCopy.sharedo \
 X86LINUX64ICC/eosPointRead.sharedo \
+X86LINUX64ICC/eosPointRotate.sharedo \
+X86LINUX64ICC/eosPointUtil.sharedo \
+X86LINUX64ICC/eosPointWrite.sharedo \
 
 OBJDEBUG = \
+eosPointCopy.debugo \
 eosPointRead.debugo \
+eosPointRotate.debugo \
+eosPointUtil.debugo \
+eosPointWrite.debugo \
 
 REALOBJDEBUG = \
+X86LINUX64ICC/eosPointCopy.debugo \
 X86LINUX64ICC/eosPointRead.debugo \
+X86LINUX64ICC/eosPointRotate.debugo \
+X86LINUX64ICC/eosPointUtil.debugo \
+X86LINUX64ICC/eosPointWrite.debugo \
 
 OBJCUDAGDB = \
+eosPointCopy.cudagdb.o \
 eosPointRead.cudagdb.o \
+eosPointRotate.cudagdb.o \
+eosPointUtil.cudagdb.o \
+eosPointWrite.cudagdb.o \
 
 REALOBJCUDAGDB = \
+X86LINUX64ICC/eosPointCopy.cudagdb.o \
 X86LINUX64ICC/eosPointRead.cudagdb.o \
+X86LINUX64ICC/eosPointRotate.cudagdb.o \
+X86LINUX64ICC/eosPointUtil.cudagdb.o \
+X86LINUX64ICC/eosPointWrite.cudagdb.o \
 
 
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
diff --git a/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointCopy.c b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointCopy.c
new file mode 120000 (symlink)
index 0000000..4611fe2
--- /dev/null
@@ -0,0 +1 @@
+../eosPointCopy.c
\ No newline at end of file
diff --git a/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointCopy.sharedo b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointCopy.sharedo
new file mode 100644 (file)
index 0000000..c2bf877
Binary files /dev/null and b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointCopy.sharedo differ
index 9c49679..a8872d0 100644 (file)
Binary files a/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointRead.sharedo and b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointRead.sharedo differ
diff --git a/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointRotate.c b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointRotate.c
new file mode 120000 (symlink)
index 0000000..1a232e2
--- /dev/null
@@ -0,0 +1 @@
+../eosPointRotate.c
\ No newline at end of file
diff --git a/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointRotate.sharedo b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointRotate.sharedo
new file mode 100644 (file)
index 0000000..986e2be
Binary files /dev/null and b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointRotate.sharedo differ
diff --git a/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointUtil.c b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointUtil.c
new file mode 120000 (symlink)
index 0000000..5a8f8c6
--- /dev/null
@@ -0,0 +1 @@
+../eosPointUtil.c
\ No newline at end of file
diff --git a/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointUtil.sharedo b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointUtil.sharedo
new file mode 100644 (file)
index 0000000..c00c954
Binary files /dev/null and b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointUtil.sharedo differ
diff --git a/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointWrite.c b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointWrite.c
new file mode 120000 (symlink)
index 0000000..88d2ef9
--- /dev/null
@@ -0,0 +1 @@
+../eosPointWrite.c
\ No newline at end of file
diff --git a/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointWrite.sharedo b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointWrite.sharedo
new file mode 100644 (file)
index 0000000..99e5a22
Binary files /dev/null and b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointWrite.sharedo differ
index c281ffd..390ead8 100644 (file)
Binary files a/src/Objects/General/eosPoint/src/X86LINUX64ICC/libeosPoint.a and b/src/Objects/General/eosPoint/src/X86LINUX64ICC/libeosPoint.a differ
index 0f8dfeb..f552f94 100644 (file)
Binary files a/src/Objects/General/eosPoint/src/X86LINUX64ICC/libeosPoint.debug.a and b/src/Objects/General/eosPoint/src/X86LINUX64ICC/libeosPoint.debug.a differ
index 56e029c..6091a3d 100755 (executable)
Binary files a/src/Objects/General/eosPoint/src/X86LINUX64ICC/libeosPoint.so and b/src/Objects/General/eosPoint/src/X86LINUX64ICC/libeosPoint.so differ
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index 3216c25..5dcf0db 100644 (file)
@@ -71,18 +71,17 @@ hf2000Init.o: hf2000Init.c ../inc/hf2000.h /usr/include/sys/types.h \
  /usr/include/tkDecls.h /usr/include/stdlib.h \
  /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
  /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/bits/huge_val.h \
- /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
- /usr/include/bits/inf.h /usr/include/bits/nan.h \
- /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
- /usr/include/values.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/string.h /usr/include/xlocale.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/Socket.h /usr/include/unistd.h \
  /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
@@ -101,11 +100,12 @@ hf2000Read.o: hf2000Read.c /usr/include/unistd.h /usr/include/features.h \
  /usr/include/bits/types.h /usr/include/bits/typesizes.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  /usr/include/bits/confname.h /usr/include/getopt.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
@@ -129,9 +129,11 @@ hf2000Read.o: hf2000Read.c /usr/include/unistd.h /usr/include/features.h \
  /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
  /usr/include/tkDecls.h
 hf2000Write.o: hf2000Write.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -143,28 +145,26 @@ hf2000Write.o: hf2000Write.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/hf2000.h \
  /usr/include/sys/types.h /usr/include/bits/types.h \
- /usr/include/bits/typesizes.h /usr/include/time.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/endian.h /usr/include/bits/endian.h \
- /usr/include/bits/byteswap.h /usr/include/sys/select.h \
- /usr/include/bits/select.h /usr/include/bits/sigset.h \
- /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/sys/stat.h \
- /usr/include/bits/stat.h /usr/include/fcntl.h /usr/include/bits/fcntl.h \
- /usr/include/termios.h /usr/include/bits/termios.h \
- /usr/include/sys/ttydefaults.h /usr/include/stdio.h /usr/include/libio.h \
- /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/bits/typesizes.h /usr/include/time.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/sys/stat.h /usr/include/bits/stat.h /usr/include/fcntl.h \
+ /usr/include/bits/fcntl.h /usr/include/termios.h \
+ /usr/include/bits/termios.h /usr/include/sys/ttydefaults.h \
+ /usr/include/stdio.h /usr/include/libio.h /usr/include/_G_config.h \
+ /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/tk.h /usr/include/tcl.h /usr/include/tclDecls.h \
  /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
  /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
- /usr/include/tkDecls.h /usr/include/string.h /usr/include/xlocale.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/alloca.h \
- /usr/include/unistd.h /usr/include/bits/posix_opt.h \
- /usr/include/bits/environments.h /usr/include/bits/confname.h \
- /usr/include/getopt.h
+ /usr/include/tkDecls.h /usr/include/stdlib.h \
+ /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
+ /usr/include/alloca.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h
 lhf2000LenzCurrent.o: lhf2000LenzCurrent.c ../inc/hf2000.h \
  /usr/include/sys/types.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
@@ -187,19 +187,19 @@ lhf2000LenzCurrent.o: lhf2000LenzCurrent.c ../inc/hf2000.h \
  /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
  /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
  /usr/include/tkDecls.h lhf2000LenzCurrent.h ../inc/hf2000.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/String.h /usr/include/string.h \
- /usr/include/xlocale.h /usr/include/stdlib.h \
+ /home/people/tacyas/Eos/include/String.h /usr/include/stdlib.h \
  /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
  /usr/include/alloca.h /usr/include/unistd.h \
  /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
@@ -226,19 +226,19 @@ lhf2000SpecimenPosition.o: lhf2000SpecimenPosition.c ../inc/hf2000.h \
  /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
  /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
  /usr/include/tkDecls.h lhf2000SpecimenPosition.h ../inc/hf2000.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/String.h /usr/include/string.h \
- /usr/include/xlocale.h /usr/include/stdlib.h \
+ /home/people/tacyas/Eos/include/String.h /usr/include/stdlib.h \
  /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
  /usr/include/alloca.h /usr/include/unistd.h \
  /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
@@ -258,11 +258,12 @@ ltkhf2000.o: ltkhf2000.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
  /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 28e9069..a429553 100755 (executable)
@@ -22,6 +22,8 @@ $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
 
+debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
+
 $(LIBNAMEDEBUG): $(OBJDEBUG)
        @echo LIBNAME:$(LIBNAMEDEBUG)
        $(AR) rs $(LIBNAMEDEBUG) $(OBJDEBUG)
index c135e60..eb82344 100644 (file)
Binary files a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.a and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.a differ
index 8586ca7..ef99785 100644 (file)
Binary files a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.debug.a and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.debug.a differ
index e5aa9d0..b33b08f 100755 (executable)
Binary files a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.so and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.so differ
index 684ec03..81231bd 100755 (executable)
Binary files a/src/Tools/Coord/coordRotation/src/X86LINUX64ICC/coordRotation and b/src/Tools/Coord/coordRotation/src/X86LINUX64ICC/coordRotation differ
index 0319da0..26b1852 100755 (executable)
Binary files a/src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86LINUX64ICC/ctfDeterminationFromMultiImage and b/src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86LINUX64ICC/ctfDeterminationFromMultiImage differ
index b605dab..3b3bb99 100755 (executable)
Binary files a/src/Tools/ctfInfo/ctfEnvelopFunction/src/X86LINUX64ICC/ctfEnvelopFunction and b/src/Tools/ctfInfo/ctfEnvelopFunction/src/X86LINUX64ICC/ctfEnvelopFunction differ
index 9183926..d70dd30 100755 (executable)
Binary files a/src/Tools/ctfInfo/ctfFunction/src/X86LINUX64ICC/ctfFunction and b/src/Tools/ctfInfo/ctfFunction/src/X86LINUX64ICC/ctfFunction differ
index ed400f5..af88a19 100755 (executable)
Binary files a/src/Tools/ctfInfo/ctfInfoSet/src/X86LINUX64ICC/ctfInfoSet and b/src/Tools/ctfInfo/ctfInfoSet/src/X86LINUX64ICC/ctfInfoSet differ
index 2f572f3..cfeacf6 100644 (file)
@@ -59,6 +59,7 @@ ctfMultiFunction.o: ctfMultiFunction.c /usr/include/stdio.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
index e46d603..57ccbe8 100755 (executable)
Binary files a/src/Tools/ctfInfo/ctfMultiFunction/src/X86LINUX64ICC/ctfMultiFunction and b/src/Tools/ctfInfo/ctfMultiFunction/src/X86LINUX64ICC/ctfMultiFunction differ
index 0d6dde8..815cf1d 100755 (executable)
Binary files a/src/Tools/ctfInfo/electronWaveLength/src/X86LINUX64ICC/electronWaveLength and b/src/Tools/ctfInfo/electronWaveLength/src/X86LINUX64ICC/electronWaveLength differ
index b28d1c9..99cdd59 100755 (executable)
Binary files a/src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86LINUX64ICC/molecularEnvelopeResampling and b/src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86LINUX64ICC/molecularEnvelopeResampling differ
diff --git a/src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC/.Depend b/src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC/.Depend
new file mode 100644 (file)
index 0000000..2122ef4
--- /dev/null
@@ -0,0 +1,130 @@
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/eosPointRotation.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+eosPointRotation.o: eosPointRotation.c /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/eosPointRotation.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/Memory.h \
+ /home/people/tacyas/Eos/include/eosPoint.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h
+init.o: init.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/eosPointRotation.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/eosPointRotation.h
+util.o: util.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/eosPointRotation.h
diff --git a/src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC/Makefile b/src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC/Makefile
new file mode 100755 (executable)
index 0000000..ec61247
--- /dev/null
@@ -0,0 +1,114 @@
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES   = \
+                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
+
+LIBFILESDEBUG   = \
+                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
+
+SRCC  = \
+                       $(OBJECTNAME).c \
+                       init.c \
+                       argCheck.c \
+                       usage.c  \
+                       util.c 
+
+SRCCXX  = \
+                       $(OBJECTNAME).cc \
+                       init.cc \
+                       argCheck.cc \
+                       usage.cc  \
+                       util.cc 
+
+MODULES    = \
+                       $(OBJECTNAME).o \
+                       init.o \
+                       argCheck.o \
+                       usage.o  \
+                       util.o 
+
+REALMODULES    = \
+                       $(OSTYPE)/$(OBJECTNAME).o \
+                       $(OSTYPE)/init.o \
+                       $(OSTYPE)/argCheck.o \
+                       $(OSTYPE)/usage.o \
+                       $(OSTYPE)/util.o 
+
+MODULESDEBUG    = \
+                       $(OBJECTNAME).debugo \
+                       init.debugo \
+                       argCheck.debugo \
+                       usage.debugo  \
+                       util.debugo 
+
+MODULESCUDAGDB    = \
+                       $(OBJECTNAME).cudagdb.o \
+                       init.cudagdb.o \
+                       argCheck.cudagdb.o \
+                       usage.cudagdb.o  \
+                       util.cudagdb.o 
+
+REALMODULESDEBUG    = \
+                       $(OSTYPE)/$(OBJECTNAME).debugo \
+                       $(OSTYPE)/init.debugo \
+                       $(OSTYPE)/argCheck.debugo \
+                       $(OSTYPE)/usage.debugo \
+                       $(OSTYPE)/util.debugo 
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+       fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+       echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+       $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include  $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc
diff --git a/src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC/X86LINUX64ICC b/src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC/X86LINUX64ICC
new file mode 120000 (symlink)
index 0000000..9644142
--- /dev/null
@@ -0,0 +1 @@
+../../../../../hostdepend/X86LINUX64ICC/src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC
\ No newline at end of file
diff --git a/src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC/eosPointRotation b/src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC/eosPointRotation
new file mode 100755 (executable)
index 0000000..153f3ec
Binary files /dev/null and b/src/Tools/eosPoint/eosPointRotation/src/X86LINUX64ICC/eosPointRotation differ
index 49cd85c..1b8e2be 100755 (executable)
Binary files a/src/Tools/filter/dos2unix/src/X86LINUX64ICC/dos2unix and b/src/Tools/filter/dos2unix/src/X86LINUX64ICC/dos2unix differ
index 4385073..9d513ab 100644 (file)
@@ -59,9 +59,11 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrc2fld.o: mrc2fld.c /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/string.h /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -72,10 +74,9 @@ mrc2fld.o: mrc2fld.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
@@ -84,8 +85,7 @@ mrc2fld.o: mrc2fld.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h ../inc/config.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
  ../inc/../inc/mrc2fld.h /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
index 42b10bd..cdebf1d 100755 (executable)
Binary files a/src/Tools/filter/pdb2ucd/src/X86LINUX64ICC/pdb2ucd and b/src/Tools/filter/pdb2ucd/src/X86LINUX64ICC/pdb2ucd differ
index 87ecf80..44ba7c3 100755 (executable)
Binary files a/src/Tools/filter/tgaInfo/src/X86LINUX64ICC/tgaInfo and b/src/Tools/filter/tgaInfo/src/X86LINUX64ICC/tgaInfo differ
index 80f1ac3..08fcfb2 100755 (executable)
Binary files a/src/Tools/largeIP/largeIPInfo/src/X86LINUX64ICC/largeIPInfo and b/src/Tools/largeIP/largeIPInfo/src/X86LINUX64ICC/largeIPInfo differ
index f2daa14..4d419e3 100755 (executable)
Binary files a/src/Tools/llData/llDataCTFCompensate/src/X86LINUX64ICC/llDataCTFCompensate and b/src/Tools/llData/llDataCTFCompensate/src/X86LINUX64ICC/llDataCTFCompensate differ
index 73ec562..f89de1f 100755 (executable)
Binary files a/src/Tools/llData/llDataCompare/src/X86LINUX64ICC/llDataCompare and b/src/Tools/llData/llDataCompare/src/X86LINUX64ICC/llDataCompare differ
index 50caa8f..012a772 100755 (executable)
Binary files a/src/Tools/llData/llDataContributionCalcDifferentN/src/X86LINUX64ICC/llDataContributionCalcDifferentN and b/src/Tools/llData/llDataContributionCalcDifferentN/src/X86LINUX64ICC/llDataContributionCalcDifferentN differ
index a651aaf..e068460 100755 (executable)
Binary files a/src/Tools/llData/llDataDump/src/X86LINUX64ICC/llDataDump and b/src/Tools/llData/llDataDump/src/X86LINUX64ICC/llDataDump differ
index 1dbe8b6..339beb6 100755 (executable)
Binary files a/src/Tools/llData/llDataEquatorAdd/src/X86LINUX64ICC/llDataEquatorAdd and b/src/Tools/llData/llDataEquatorAdd/src/X86LINUX64ICC/llDataEquatorAdd differ
index 8c80831..23ea4dc 100755 (executable)
Binary files a/src/Tools/llData/llDataExtract/src/X86LINUX64ICC/llDataExtract and b/src/Tools/llData/llDataExtract/src/X86LINUX64ICC/llDataExtract differ
index 11c5684..befdd4b 100755 (executable)
Binary files a/src/Tools/llData/llDataFit/src/X86LINUX64ICC/llDataFit and b/src/Tools/llData/llDataFit/src/X86LINUX64ICC/llDataFit differ
index f4a49a3..127babf 100755 (executable)
Binary files a/src/Tools/llData/llDataInfo/src/X86LINUX64ICC/llDataInfo and b/src/Tools/llData/llDataInfo/src/X86LINUX64ICC/llDataInfo differ
index a30ca39..fb144b5 100755 (executable)
Binary files a/src/Tools/llData/llDataLowPassFiltering/src/X86LINUX64ICC/llDataLowPassFiltering and b/src/Tools/llData/llDataLowPassFiltering/src/X86LINUX64ICC/llDataLowPassFiltering differ
index 2aa10b5..7c20094 100755 (executable)
Binary files a/src/Tools/llData/llDataNEstimation/src/X86LINUX64ICC/llDataNEstimation and b/src/Tools/llData/llDataNEstimation/src/X86LINUX64ICC/llDataNEstimation differ
index 59d9134..44c4e33 100755 (executable)
Binary files a/src/Tools/llData/llDataNormalization/src/X86LINUX64ICC/llDataNormalization and b/src/Tools/llData/llDataNormalization/src/X86LINUX64ICC/llDataNormalization differ
index ba43297..af0ac88 100755 (executable)
Binary files a/src/Tools/llData/llDataRescaling/src/X86LINUX64ICC/llDataRescaling and b/src/Tools/llData/llDataRescaling/src/X86LINUX64ICC/llDataRescaling differ
index e9d52a4..eb39c92 100755 (executable)
Binary files a/src/Tools/llData/llDataResolutionCheck/src/X86LINUX64ICC/llDataResolutionCheck and b/src/Tools/llData/llDataResolutionCheck/src/X86LINUX64ICC/llDataResolutionCheck differ
index a857abe..90fd537 100755 (executable)
Binary files a/src/Tools/llData/llDataSelectionEstimation/src/X86LINUX64ICC/llDataSelectionEstimation and b/src/Tools/llData/llDataSelectionEstimation/src/X86LINUX64ICC/llDataSelectionEstimation differ
index a2d9d77..44dd828 100755 (executable)
Binary files a/src/Tools/llData/llDataWeightSet/src/X86LINUX64ICC/llDataWeightSet and b/src/Tools/llData/llDataWeightSet/src/X86LINUX64ICC/llDataWeightSet differ
index da1eaf9..4e0d749 100755 (executable)
Binary files a/src/Tools/llData/llDatarMaxLimit/src/X86LINUX64ICC/llDatarMaxLimit and b/src/Tools/llData/llDatarMaxLimit/src/X86LINUX64ICC/llDatarMaxLimit differ
index 9afad53..935ed64 100755 (executable)
Binary files a/src/Tools/ltlgData/ltlgDataInfo/src/X86LINUX64ICC/ltlgDataInfo and b/src/Tools/ltlgData/ltlgDataInfo/src/X86LINUX64ICC/ltlgDataInfo differ
index 61f66ab..d76023d 100755 (executable)
Binary files a/src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86LINUX64ICC/matrix3DEulerAngleTransform and b/src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86LINUX64ICC/matrix3DEulerAngleTransform differ
index 92aebb8..b39c8f8 100755 (executable)
Binary files a/src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86LINUX64ICC/matrix3DFromEulerAngle and b/src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86LINUX64ICC/matrix3DFromEulerAngle differ
index fbb3a11..0c654bf 100755 (executable)
Binary files a/src/Tools/matrix3D/matrix3DInverse/src/X86LINUX64ICC/matrix3DInverse and b/src/Tools/matrix3D/matrix3DInverse/src/X86LINUX64ICC/matrix3DInverse differ
index 3ac9d9b..e91fd30 100755 (executable)
Binary files a/src/Tools/matrix3D/matrix3DToEulerAngle/src/X86LINUX64ICC/matrix3DToEulerAngle and b/src/Tools/matrix3D/matrix3DToEulerAngle/src/X86LINUX64ICC/matrix3DToEulerAngle differ
index 25730f4..a7907ff 100644 (file)
@@ -78,7 +78,8 @@ mrc2dsn6.o: mrc2dsn6.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/mrc2dsn6.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 591918d..99d61c7 100644 (file)
@@ -78,7 +78,8 @@ mrc2map.o: mrc2map.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/mrc2map.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index b020f26..5f527de 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86LINUX64ICC/mrcFFTBandPassFilter and b/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86LINUX64ICC/mrcFFTBandPassFilter differ
index 1da6480..c219eb6 100644 (file)
@@ -82,7 +82,8 @@ mrcFFTCTFCompensation.o: mrcFFTCTFCompensation.c /usr/include/stdio.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/mrcFFTCTFCompensation.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index e0d79db..b65652d 100644 (file)
@@ -81,7 +81,8 @@ mrcFFTFiltering.o: mrcFFTFiltering.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/mrcFFTFiltering.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 0c8018d..d9dd7df 100644 (file)
@@ -78,7 +78,8 @@ mrcFFTInfo.o: mrcFFTInfo.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/mrcFFTInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 6e707a2..a206eda 100644 (file)
@@ -94,7 +94,9 @@ mrcImage3DPad.o: mrcImage3DPad.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Array.h
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/lmrcImage3DPad.h \
+ /home/people/tacyas/Eos/include/mrcImage.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
index 4edd2f8..9b35de3 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86LINUX64ICC/mrcImageActinSingleParticleAnalysis and b/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86LINUX64ICC/mrcImageActinSingleParticleAnalysis differ
index ae28ef8..766553d 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageAddValue/src/X86LINUX64ICC/mrcImageAddValue and b/src/Tools/mrcImage/mrcImageAddValue/src/X86LINUX64ICC/mrcImageAddValue differ
diff --git a/src/Tools/mrcImage/mrcImageAsProbability/src/X86LINUX64ICC/.Depend b/src/Tools/mrcImage/mrcImageAsProbability/src/X86LINUX64ICC/.Depend
new file mode 100644 (file)
index 0000000..4653821
--- /dev/null
@@ -0,0 +1,130 @@
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageAsProbability.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+init.o: init.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageAsProbability.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+mrcImageAsProbability.o: mrcImageAsProbability.c /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageAsProbability.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/lmrcImageAsProbability.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImageAsProbability.h
+util.o: util.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImageAsProbability.h
diff --git a/src/Tools/mrcImage/mrcImageAsProbability/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAsProbability/src/X86LINUX64ICC/Makefile
new file mode 100755 (executable)
index 0000000..ec61247
--- /dev/null
@@ -0,0 +1,114 @@
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES   = \
+                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
+
+LIBFILESDEBUG   = \
+                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
+
+SRCC  = \
+                       $(OBJECTNAME).c \
+                       init.c \
+                       argCheck.c \
+                       usage.c  \
+                       util.c 
+
+SRCCXX  = \
+                       $(OBJECTNAME).cc \
+                       init.cc \
+                       argCheck.cc \
+                       usage.cc  \
+                       util.cc 
+
+MODULES    = \
+                       $(OBJECTNAME).o \
+                       init.o \
+                       argCheck.o \
+                       usage.o  \
+                       util.o 
+
+REALMODULES    = \
+                       $(OSTYPE)/$(OBJECTNAME).o \
+                       $(OSTYPE)/init.o \
+                       $(OSTYPE)/argCheck.o \
+                       $(OSTYPE)/usage.o \
+                       $(OSTYPE)/util.o 
+
+MODULESDEBUG    = \
+                       $(OBJECTNAME).debugo \
+                       init.debugo \
+                       argCheck.debugo \
+                       usage.debugo  \
+                       util.debugo 
+
+MODULESCUDAGDB    = \
+                       $(OBJECTNAME).cudagdb.o \
+                       init.cudagdb.o \
+                       argCheck.cudagdb.o \
+                       usage.cudagdb.o  \
+                       util.cudagdb.o 
+
+REALMODULESDEBUG    = \
+                       $(OSTYPE)/$(OBJECTNAME).debugo \
+                       $(OSTYPE)/init.debugo \
+                       $(OSTYPE)/argCheck.debugo \
+                       $(OSTYPE)/usage.debugo \
+                       $(OSTYPE)/util.debugo 
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+       fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+       echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+       $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include  $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc
diff --git a/src/Tools/mrcImage/mrcImageAsProbability/src/X86LINUX64ICC/X86LINUX64ICC b/src/Tools/mrcImage/mrcImageAsProbability/src/X86LINUX64ICC/X86LINUX64ICC
new file mode 120000 (symlink)
index 0000000..ffdf893
--- /dev/null
@@ -0,0 +1 @@
+../../../../../hostdepend/X86LINUX64ICC/src/Tools/mrcImage/mrcImageAsProbability/src/X86LINUX64ICC
\ No newline at end of file
index 4c8bfbe..0abe2dc 100644 (file)
@@ -61,10 +61,12 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
 mrcImageAverage.o: mrcImageAverage.c \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/xlocale.h /usr/include/math.h /usr/include/bits/huge_val.h \
  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
@@ -75,10 +77,9 @@ mrcImageAverage.o: mrcImageAverage.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /usr/include/stdio.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/include/stdio.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
@@ -87,8 +88,7 @@ mrcImageAverage.o: mrcImageAverage.c \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
- /usr/include/string.h /usr/include/xlocale.h ../inc/config.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
  ../inc/../inc/mrcImageAverage.h /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
index 69f6add..d081d85 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86LINUX64ICC/mrcImageBoundaryInfo and b/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86LINUX64ICC/mrcImageBoundaryInfo differ
index 7a445d4..ec10d51 100644 (file)
@@ -80,15 +80,15 @@ mrcImageClusterAnalysis.o: mrcImageClusterAnalysis.c /usr/include/stdio.h \
  /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
  /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageClusterAnalysis.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/config.h \
- ../inc/../inc/mrcImageClusterAnalysis.h \
- /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
diff --git a/src/Tools/mrcImage/mrcImageDeconvolution/src/X86LINUX64ICC/.Depend b/src/Tools/mrcImage/mrcImageDeconvolution/src/X86LINUX64ICC/.Depend
new file mode 100644 (file)
index 0000000..9578b20
--- /dev/null
@@ -0,0 +1,136 @@
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageDeconvolution.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+init.o: init.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageDeconvolution.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+mrcImageDeconvolution.o: mrcImageDeconvolution.c /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageDeconvolution.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/lmrcImageDeconvolution.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/lmrcImage3DPad.h \
+ /home/people/tacyas/Eos/include/lmrcImageMultiplying.h \
+ /home/people/tacyas/Eos/include/lmrcImageSubtractionCalc.h \
+ /home/people/tacyas/Eos/include/lmrcImageDensityNormalizationByImage.h \
+ /home/people/tacyas/Eos/include/lmrcImageSigmaCalculate.h \
+ /home/people/tacyas/Eos/include/lmrcImageAddValue.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImageDeconvolution.h
+util.o: util.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImageDeconvolution.h
diff --git a/src/Tools/mrcImage/mrcImageDeconvolution/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDeconvolution/src/X86LINUX64ICC/Makefile
new file mode 100755 (executable)
index 0000000..ec61247
--- /dev/null
@@ -0,0 +1,114 @@
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES   = \
+                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
+
+LIBFILESDEBUG   = \
+                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
+
+SRCC  = \
+                       $(OBJECTNAME).c \
+                       init.c \
+                       argCheck.c \
+                       usage.c  \
+                       util.c 
+
+SRCCXX  = \
+                       $(OBJECTNAME).cc \
+                       init.cc \
+                       argCheck.cc \
+                       usage.cc  \
+                       util.cc 
+
+MODULES    = \
+                       $(OBJECTNAME).o \
+                       init.o \
+                       argCheck.o \
+                       usage.o  \
+                       util.o 
+
+REALMODULES    = \
+                       $(OSTYPE)/$(OBJECTNAME).o \
+                       $(OSTYPE)/init.o \
+                       $(OSTYPE)/argCheck.o \
+                       $(OSTYPE)/usage.o \
+                       $(OSTYPE)/util.o 
+
+MODULESDEBUG    = \
+                       $(OBJECTNAME).debugo \
+                       init.debugo \
+                       argCheck.debugo \
+                       usage.debugo  \
+                       util.debugo 
+
+MODULESCUDAGDB    = \
+                       $(OBJECTNAME).cudagdb.o \
+                       init.cudagdb.o \
+                       argCheck.cudagdb.o \
+                       usage.cudagdb.o  \
+                       util.cudagdb.o 
+
+REALMODULESDEBUG    = \
+                       $(OSTYPE)/$(OBJECTNAME).debugo \
+                       $(OSTYPE)/init.debugo \
+                       $(OSTYPE)/argCheck.debugo \
+                       $(OSTYPE)/usage.debugo \
+                       $(OSTYPE)/util.debugo 
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+       fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+       echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+       $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include  $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc
diff --git a/src/Tools/mrcImage/mrcImageDeconvolution/src/X86LINUX64ICC/X86LINUX64ICC b/src/Tools/mrcImage/mrcImageDeconvolution/src/X86LINUX64ICC/X86LINUX64ICC
new file mode 120000 (symlink)
index 0000000..6d1d0fa
--- /dev/null
@@ -0,0 +1 @@
+../../../../../hostdepend/X86LINUX64ICC/src/Tools/mrcImage/mrcImageDeconvolution/src/X86LINUX64ICC
\ No newline at end of file
index 971d1d4..d7ee6e6 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64ICC/mrcImageFFT and b/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64ICC/mrcImageFFT differ
index a985926..43b558a 100644 (file)
@@ -81,7 +81,8 @@ mrcImageInfo.o: mrcImageInfo.c /usr/include/stdio.h \
  /usr/include/bits/inf.h /usr/include/bits/nan.h \
  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
  ../inc/config.h ../inc/../inc/mrcImageInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 94e20c4..6315899 100644 (file)
@@ -99,7 +99,8 @@ mrcImageMasking.o: mrcImageMasking.c /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/lmrcImageNormalizing.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/nr2.h
+ /home/people/tacyas/Eos/include/nr2.h \
+ /home/people/tacyas/Eos/include/lmrcImageMasking.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
diff --git a/src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86LINUX64ICC/.Depend b/src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86LINUX64ICC/.Depend
new file mode 100644 (file)
index 0000000..e731cfc
--- /dev/null
@@ -0,0 +1,131 @@
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImagePanoramaCreate.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+init.o: init.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImagePanoramaCreate.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+mrcImagePanoramaCreate.o: mrcImagePanoramaCreate.c /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImagePanoramaCreate.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/Memory.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImagePanoramaCreate.h
+util.o: util.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImagePanoramaCreate.h
diff --git a/src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86LINUX64ICC/Makefile
new file mode 100755 (executable)
index 0000000..ec61247
--- /dev/null
@@ -0,0 +1,114 @@
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES   = \
+                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
+
+LIBFILESDEBUG   = \
+                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
+
+SRCC  = \
+                       $(OBJECTNAME).c \
+                       init.c \
+                       argCheck.c \
+                       usage.c  \
+                       util.c 
+
+SRCCXX  = \
+                       $(OBJECTNAME).cc \
+                       init.cc \
+                       argCheck.cc \
+                       usage.cc  \
+                       util.cc 
+
+MODULES    = \
+                       $(OBJECTNAME).o \
+                       init.o \
+                       argCheck.o \
+                       usage.o  \
+                       util.o 
+
+REALMODULES    = \
+                       $(OSTYPE)/$(OBJECTNAME).o \
+                       $(OSTYPE)/init.o \
+                       $(OSTYPE)/argCheck.o \
+                       $(OSTYPE)/usage.o \
+                       $(OSTYPE)/util.o 
+
+MODULESDEBUG    = \
+                       $(OBJECTNAME).debugo \
+                       init.debugo \
+                       argCheck.debugo \
+                       usage.debugo  \
+                       util.debugo 
+
+MODULESCUDAGDB    = \
+                       $(OBJECTNAME).cudagdb.o \
+                       init.cudagdb.o \
+                       argCheck.cudagdb.o \
+                       usage.cudagdb.o  \
+                       util.cudagdb.o 
+
+REALMODULESDEBUG    = \
+                       $(OSTYPE)/$(OBJECTNAME).debugo \
+                       $(OSTYPE)/init.debugo \
+                       $(OSTYPE)/argCheck.debugo \
+                       $(OSTYPE)/usage.debugo \
+                       $(OSTYPE)/util.debugo 
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+       fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+       echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+       $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include  $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc
diff --git a/src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86LINUX64ICC/X86LINUX64ICC b/src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86LINUX64ICC/X86LINUX64ICC
new file mode 120000 (symlink)
index 0000000..21d0e19
--- /dev/null
@@ -0,0 +1 @@
+../../../../../hostdepend/X86LINUX64ICC/src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86LINUX64ICC
\ No newline at end of file
index 21a6a72..1e27f0f 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86LINUX64ICC/mrcImagePhaseCTFCompensationFromCTFINFO and b/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86LINUX64ICC/mrcImagePhaseCTFCompensationFromCTFINFO differ
index 80bac96..e799214 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImagePolyROI/src/X86LINUX64ICC/mrcImagePolyROI and b/src/Tools/mrcImage/mrcImagePolyROI/src/X86LINUX64ICC/mrcImagePolyROI differ
index 5739472..c0ced91 100644 (file)
@@ -83,7 +83,8 @@ mrcImagePrint.o: mrcImagePrint.c /usr/include/stdio.h \
  ../inc/config.h ../inc/../inc/mrcImagePrint.h \
  /home/people/tacyas/Eos/include/lmrcImagePrint.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
  /usr/include/limits.h /usr/include/bits/posix1_lim.h \
index 0624f55..549df59 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImagePrint3D/src/X86LINUX64ICC/mrcImagePrint3D and b/src/Tools/mrcImage/mrcImagePrint3D/src/X86LINUX64ICC/mrcImagePrint3D differ
index 3350861..5a6de42 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86LINUX64ICC/mrcImageSimilarImageSearch and b/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86LINUX64ICC/mrcImageSimilarImageSearch differ
index faaf9d0..6cc291b 100644 (file)
@@ -60,3 +60,73 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
+mrcImageTiltAxisSearch.o: mrcImageTiltAxisSearch.c /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/mrcImageTiltAxisSearch.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcRefUtil.h \
+ /home/people/tacyas/Eos/include/Memory.h \
+ /home/people/tacyas/Eos/include/Vector.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImageTiltAxisSearch.h
+util.o: util.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrcImageTiltAxisSearch.h
index 0788ece..416f766 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64ICC/mrcImateToPointsSet and b/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64ICC/mrcImateToPointsSet differ
index 71b72d8..0b0a455 100644 (file)
@@ -82,7 +82,6 @@ mrcMeanYlinePos.o: mrcMeanYlinePos.c /usr/include/stdio.h \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcMeanYlinePos.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
@@ -90,6 +89,8 @@ mrcMeanYlinePos.o: mrcMeanYlinePos.c /usr/include/stdio.h \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
index a30d773..ecff371 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86LINUX64ICC/mrcRefImageOmegaCorrelation and b/src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86LINUX64ICC/mrcRefImageOmegaCorrelation differ
index 6bf6510..6b09870 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcRefImagepwzCorrelationByFFT/src/X86LINUX64ICC/mrcRefImagepwzCorrelationByFFT and b/src/Tools/mrcImage/mrcRefImagepwzCorrelationByFFT/src/X86LINUX64ICC/mrcRefImagepwzCorrelationByFFT differ
index 39d2a03..a726187 100644 (file)
@@ -89,6 +89,7 @@ mrcSinogramFETcalcSDforNormalize.o: mrcSinogramFETcalcSDforNormalize.c \
  /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  /usr/include/bits/posix2_lim.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h \
index 3e8f661..31759e2 100755 (executable)
Binary files a/src/Tools/openGL/gmolvie/src/X86LINUX64ICC/gmolvie and b/src/Tools/openGL/gmolvie/src/X86LINUX64ICC/gmolvie differ
index c2c08ee..733ea38 100755 (executable)
Binary files a/src/Tools/openGL/rasmonyo/src/X86LINUX64ICC/rasmonyo and b/src/Tools/openGL/rasmonyo/src/X86LINUX64ICC/rasmonyo differ
index 9df2760..0a6c663 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdb2SketchMacro/src/X86LINUX64ICC/pdb2SketchMacro and b/src/Tools/pdbUtil/pdb2SketchMacro/src/X86LINUX64ICC/pdb2SketchMacro differ
index c1cc9ec..4cff3b3 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdb2bender/src/X86LINUX64ICC/pdb2bender and b/src/Tools/pdbUtil/pdb2bender/src/X86LINUX64ICC/pdb2bender differ
index fd1adb9..6f527d4 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbAtomSection/src/X86LINUX64ICC/pdbAtomSection and b/src/Tools/pdbUtil/pdbAtomSection/src/X86LINUX64ICC/pdbAtomSection differ
index d629703..11575be 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbCAOnly/src/X86LINUX64ICC/pdbCAOnly and b/src/Tools/pdbUtil/pdbCAOnly/src/X86LINUX64ICC/pdbCAOnly differ
index 8fce76d..8829451 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbCoordAdd/src/X86LINUX64ICC/pdbCoordAdd and b/src/Tools/pdbUtil/pdbCoordAdd/src/X86LINUX64ICC/pdbCoordAdd differ
index db12401..12e9c52 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbDisplay/src/X86LINUX64ICC/pdbDisplay and b/src/Tools/pdbUtil/pdbDisplay/src/X86LINUX64ICC/pdbDisplay differ
index 25fd4fe..f172b77 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbFileMerge/src/X86LINUX64ICC/pdbFileMerge and b/src/Tools/pdbUtil/pdbFileMerge/src/X86LINUX64ICC/pdbFileMerge differ
index 850bf36..17e7fd2 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbInfo/src/X86LINUX64ICC/pdbInfo and b/src/Tools/pdbUtil/pdbInfo/src/X86LINUX64ICC/pdbInfo differ
index 0a7f493..cc84053 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbListRMSDCalc/src/X86LINUX64ICC/pdbListRMSDCalc and b/src/Tools/pdbUtil/pdbListRMSDCalc/src/X86LINUX64ICC/pdbListRMSDCalc differ
index 2d7832a..f77799d 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbMolecularInterfaceFind/src/X86LINUX64ICC/pdbMolecularInterfaceFind and b/src/Tools/pdbUtil/pdbMolecularInterfaceFind/src/X86LINUX64ICC/pdbMolecularInterfaceFind differ
index 8361f7e..108fa59 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbNAMDRestraintCreate/src/X86LINUX64ICC/pdbNAMDRestraintCreate and b/src/Tools/pdbUtil/pdbNAMDRestraintCreate/src/X86LINUX64ICC/pdbNAMDRestraintCreate differ
index 72f0177..41c5736 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbOneProteinGet/src/X86LINUX64ICC/pdbOneProteinGet and b/src/Tools/pdbUtil/pdbOneProteinGet/src/X86LINUX64ICC/pdbOneProteinGet differ
index 0c798d6..3820c4e 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbProteinIDSet/src/X86LINUX64ICC/pdbProteinIDSet and b/src/Tools/pdbUtil/pdbProteinIDSet/src/X86LINUX64ICC/pdbProteinIDSet differ
index f273417..5a5bf21 100644 (file)
@@ -60,6 +60,41 @@ init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
+pdbRotation.o: pdbRotation.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/pdbRotation.h /home/people/tacyas/Eos/include/eosCuda.h \
+ /home/people/tacyas/Eos/include/pdbFile.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/genUtil.h
 usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
index 11350da..8a2419d 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbRotation/src/X86LINUX64ICC/pdbRotation and b/src/Tools/pdbUtil/pdbRotation/src/X86LINUX64ICC/pdbRotation differ
index 678265b..ed3230f 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbSecondaryStructurePrint/src/X86LINUX64ICC/pdbSecondaryStructurePrint and b/src/Tools/pdbUtil/pdbSecondaryStructurePrint/src/X86LINUX64ICC/pdbSecondaryStructurePrint differ
index 78ec135..5fc4969 100755 (executable)
Binary files a/src/Tools/pdbUtil/pdbTempFactorSet/src/X86LINUX64ICC/pdbTempFactorSet and b/src/Tools/pdbUtil/pdbTempFactorSet/src/X86LINUX64ICC/pdbTempFactorSet differ
index 64f4bb1..2a29782 100755 (executable)
Binary files a/src/Tools/pdbUtil/vector2pdb/src/X86LINUX64ICC/vector2pdb and b/src/Tools/pdbUtil/vector2pdb/src/X86LINUX64ICC/vector2pdb differ
index eb074b7..d422e19 100755 (executable)
Binary files a/src/Tools/psUtil/psFileMerge/src/X86LINUX64ICC/psFileMerge and b/src/Tools/psUtil/psFileMerge/src/X86LINUX64ICC/psFileMerge differ
index c9ac8a0..090cf18 100755 (executable)
Binary files a/src/Tools/psUtil/psFilePageMerge/src/X86LINUX64ICC/psFilePageMerge and b/src/Tools/psUtil/psFilePageMerge/src/X86LINUX64ICC/psFilePageMerge differ
index 6a98d40..1925cfe 100755 (executable)
Binary files a/src/Tools/random/randomUniformGet/src/X86LINUX64ICC/randomUniformGet and b/src/Tools/random/randomUniformGet/src/X86LINUX64ICC/randomUniformGet differ
index ef0e476..98927d9 100755 (executable)
Binary files a/src/Tools/rec3d/CheckOfOrientation/src/X86LINUX64ICC/CheckOfOrientation and b/src/Tools/rec3d/CheckOfOrientation/src/X86LINUX64ICC/CheckOfOrientation differ
index 0a78413..4ecaa96 100755 (executable)
Binary files a/src/Tools/rec3d/CommonLineCalculation/src/X86LINUX64ICC/CommonLineCalculation and b/src/Tools/rec3d/CommonLineCalculation/src/X86LINUX64ICC/CommonLineCalculation differ
index 6a8aff9..1bb33de 100755 (executable)
Binary files a/src/Tools/rec3d/LCalculationForOrientationSearch/src/X86LINUX64ICC/LCalculationForOrientationSearch and b/src/Tools/rec3d/LCalculationForOrientationSearch/src/X86LINUX64ICC/LCalculationForOrientationSearch differ
index 7c5d29e..622ad0a 100755 (executable)
Binary files a/src/Tools/rec3d/ProjectionDirectionMapCreate/src/X86LINUX64ICC/ProjectionDirectionMapCreate and b/src/Tools/rec3d/ProjectionDirectionMapCreate/src/X86LINUX64ICC/ProjectionDirectionMapCreate differ
index 1266c0d..8f434b9 100755 (executable)
Binary files a/src/Tools/rec3d/calcCommonLine/src/X86LINUX64ICC/calcCommonLine and b/src/Tools/rec3d/calcCommonLine/src/X86LINUX64ICC/calcCommonLine differ
index bf6f5e0..654190b 100755 (executable)
Binary files a/src/Tools/rec3d/ll2ltlg/src/X86LINUX64ICC/ll2ltlg and b/src/Tools/rec3d/ll2ltlg/src/X86LINUX64ICC/ll2ltlg differ
index b5f6dc1..77bdc0d 100755 (executable)
Binary files a/src/Tools/rec3d/llExtractCtfinfFileCreate/src/X86LINUX64ICC/llExtractCtfinfFileCreate and b/src/Tools/rec3d/llExtractCtfinfFileCreate/src/X86LINUX64ICC/llExtractCtfinfFileCreate differ
index c072df5..0ae2dfd 100755 (executable)
Binary files a/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreateMyosin/src/X86LINUX64ICC/llExtractWithLayerSeparationCtrlFileCreateMyosin and b/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreateMyosin/src/X86LINUX64ICC/llExtractWithLayerSeparationCtrlFileCreateMyosin differ
diff --git a/src/Tools/rec3d/marker2Dto3DEstimator/src/X86LINUX64ICC/.Depend b/src/Tools/rec3d/marker2Dto3DEstimator/src/X86LINUX64ICC/.Depend
new file mode 100644 (file)
index 0000000..9ed5f91
--- /dev/null
@@ -0,0 +1,129 @@
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/marker2Dto3DEstimator.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+init.o: init.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/marker2Dto3DEstimator.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+marker2Dto3DEstimator.o: marker2Dto3DEstimator.c /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h \
+ ../inc/../inc/marker2Dto3DEstimator.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/Memory.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/eosPoint.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Array.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/marker2Dto3DEstimator.h
+util.o: util.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/marker2Dto3DEstimator.h
diff --git a/src/Tools/rec3d/marker2Dto3DEstimator/src/X86LINUX64ICC/Makefile b/src/Tools/rec3d/marker2Dto3DEstimator/src/X86LINUX64ICC/Makefile
new file mode 100755 (executable)
index 0000000..ec61247
--- /dev/null
@@ -0,0 +1,114 @@
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES   = \
+                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
+
+LIBFILESDEBUG   = \
+                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
+
+SRCC  = \
+                       $(OBJECTNAME).c \
+                       init.c \
+                       argCheck.c \
+                       usage.c  \
+                       util.c 
+
+SRCCXX  = \
+                       $(OBJECTNAME).cc \
+                       init.cc \
+                       argCheck.cc \
+                       usage.cc  \
+                       util.cc 
+
+MODULES    = \
+                       $(OBJECTNAME).o \
+                       init.o \
+                       argCheck.o \
+                       usage.o  \
+                       util.o 
+
+REALMODULES    = \
+                       $(OSTYPE)/$(OBJECTNAME).o \
+                       $(OSTYPE)/init.o \
+                       $(OSTYPE)/argCheck.o \
+                       $(OSTYPE)/usage.o \
+                       $(OSTYPE)/util.o 
+
+MODULESDEBUG    = \
+                       $(OBJECTNAME).debugo \
+                       init.debugo \
+                       argCheck.debugo \
+                       usage.debugo  \
+                       util.debugo 
+
+MODULESCUDAGDB    = \
+                       $(OBJECTNAME).cudagdb.o \
+                       init.cudagdb.o \
+                       argCheck.cudagdb.o \
+                       usage.cudagdb.o  \
+                       util.cudagdb.o 
+
+REALMODULESDEBUG    = \
+                       $(OSTYPE)/$(OBJECTNAME).debugo \
+                       $(OSTYPE)/init.debugo \
+                       $(OSTYPE)/argCheck.debugo \
+                       $(OSTYPE)/usage.debugo \
+                       $(OSTYPE)/util.debugo 
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+       fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+       echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+       $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include  $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc
diff --git a/src/Tools/rec3d/marker2Dto3DEstimator/src/X86LINUX64ICC/X86LINUX64ICC b/src/Tools/rec3d/marker2Dto3DEstimator/src/X86LINUX64ICC/X86LINUX64ICC
new file mode 120000 (symlink)
index 0000000..b917929
--- /dev/null
@@ -0,0 +1 @@
+../../../../../hostdepend/X86LINUX64ICC/src/Tools/rec3d/marker2Dto3DEstimator/src/X86LINUX64ICC
\ No newline at end of file
index 67c8174..c54ff05 100755 (executable)
Binary files a/src/Tools/rec3d/mrcImageOrientationSearchByHigherSelection/src/X86LINUX64ICC/mrcImageOrientationSearchByHigherSelection and b/src/Tools/rec3d/mrcImageOrientationSearchByHigherSelection/src/X86LINUX64ICC/mrcImageOrientationSearchByHigherSelection differ
index 1ae824c..0354b58 100755 (executable)
Binary files a/src/Tools/rec3d/mrcImageOrientationSearchByHybridization/src/X86LINUX64ICC/mrcImageOrientationSearchByHybridization and b/src/Tools/rec3d/mrcImageOrientationSearchByHybridization/src/X86LINUX64ICC/mrcImageOrientationSearchByHybridization differ
index d29d86e..9d8eedd 100644 (file)
@@ -70,13 +70,6 @@ mrcImageOrientationSearchBySimultaneousMinimization.o: \
  /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  /usr/include/bits/waitstatus.h /usr/include/endian.h \
  /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
@@ -90,7 +83,13 @@ mrcImageOrientationSearchBySimultaneousMinimization.o: \
  /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
  /usr/include/bits/mathcalls.h ../inc/config.h \
  ../inc/../inc/mrcImageOrientationSearchBySimultaneousMinimization.h \
- /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
  /home/people/tacyas/Eos/include/Memory.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
index bdfd471..6d880bd 100755 (executable)
Binary files a/src/Tools/transform/Descartes2Polar/src/X86LINUX64ICC/Descartes2Polar and b/src/Tools/transform/Descartes2Polar/src/X86LINUX64ICC/Descartes2Polar differ
index fe7b1fb..f9676e5 100755 (executable)
Binary files a/src/Tools/transform/Polar2Descartes/src/X86LINUX64ICC/Polar2Descartes and b/src/Tools/transform/Polar2Descartes/src/X86LINUX64ICC/Polar2Descartes differ
index 37f12a6..2410198 100755 (executable)
Binary files a/src/Tools/transform/pointAffineTransform/src/X86LINUX64ICC/pointAffineTransform and b/src/Tools/transform/pointAffineTransform/src/X86LINUX64ICC/pointAffineTransform differ