modified: hostdepend/X86LINUX64ICC/*

	modified:   include/eosPThread.h
	modified:   src/Tools/*/*/src/Makefile

diff --git a/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/contourCreate.c b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/contourCreate.c
new file mode 120000 (symlink)
index 0000000..ddf8e39
--- /dev/null
+++ b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/contourCreate.c
@@ -0,0 +1 @@
+../contourCreate.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/lcontour2ps.c b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/lcontour2ps.c
new file mode 120000 (symlink)
index 0000000..bfc8ad7
--- /dev/null
+++ b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/lcontour2ps.c
@@ -0,0 +1 @@
+../lcontour2ps.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.a b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.a
index 966fbbd..5985288 100644 (file)
Binary files a/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.a and b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/libContour.a differ

diff --git a/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/lmrc2contour.c b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/lmrc2contour.c
new file mode 120000 (symlink)
index 0000000..3ea8476
--- /dev/null
+++ b/src/Objects/DataExpress/Contour/src/X86LINUX64ICC/lmrc2contour.c
@@ -0,0 +1 @@
+../lmrc2contour.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/.Depend b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/.Depend
index d329ed3..626e5d8 100644 (file)
--- a/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/.Depend
+++ b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/.Depend
@@ -1,3 +1,109 @@
 X86LINUX64ICC/tkImgFmtMRC.o:tkImgFmtMRC.o
 X86LINUX64ICC/tkImgFmtlargeIP.o:tkImgFmtlargeIP.o
 X86LINUX64ICC/tkctfInfo.o:tkctfInfo.o
+tkImgFmtMRC.o: tkImgFmtMRC.c /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h tkImgFmtMRC.h \
+ /usr/include/tk.h /usr/include/tcl.h /usr/include/stdio.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/tclDecls.h /usr/include/tclPlatDecls.h \
+ /usr/include/X11/Xlib.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/endian.h /usr/include/bits/endian.h \
+ /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Memory.h /usr/include/stdlib.h \
+ /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
+ /usr/include/alloca.h /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h \
+ /home/people/tacyas/Eos/include/lmrcFFTInfo.h \
+ /home/people/tacyas/Eos/include/mrcImage.h /usr/include/string.h \
+ /usr/include/xlocale.h
+tkImgFmtlargeIP.o: tkImgFmtlargeIP.c /usr/include/tk.h /usr/include/tcl.h \
+ /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/tclDecls.h /usr/include/tclPlatDecls.h \
+ /usr/include/X11/Xlib.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/endian.h /usr/include/bits/endian.h \
+ /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/largeIP.h /usr/include/stdlib.h \
+ /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
+ /usr/include/alloca.h
+tkctfInfo.o: tkctfInfo.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h /usr/include/tk.h \
+ /usr/include/tcl.h /usr/include/tclDecls.h /usr/include/tclPlatDecls.h \
+ /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h tkctfInfo.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/ctfZeroPoint.h

diff --git a/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/libTclTk.so b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/libTclTk.so
index f1fd743..d64a1f0 100755 (executable)
Binary files a/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/libTclTk.so and b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/libTclTk.so differ

diff --git a/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/tkImgFmtMRC.c b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/tkImgFmtMRC.c
new file mode 120000 (symlink)
index 0000000..0da9c72
--- /dev/null
+++ b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/tkImgFmtMRC.c
@@ -0,0 +1 @@
+../tkImgFmtMRC.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/tkImgFmtlargeIP.c b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/tkImgFmtlargeIP.c
new file mode 120000 (symlink)
index 0000000..22ec79a
--- /dev/null
+++ b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/tkImgFmtlargeIP.c
@@ -0,0 +1 @@
+../tkImgFmtlargeIP.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/tkctfInfo.c b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/tkctfInfo.c
new file mode 120000 (symlink)
index 0000000..6f2d316
--- /dev/null
+++ b/src/Objects/DataExpress/TclTk/src/X86LINUX64ICC/tkctfInfo.c
@@ -0,0 +1 @@
+../tkctfInfo.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.a b/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.a
index f4718fa..2a8fed0 100644 (file)
Binary files a/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.a and b/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/libalsa.a differ

diff --git a/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/monoSound.c b/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/monoSound.c
new file mode 120000 (symlink)
index 0000000..05d5b2f
--- /dev/null
+++ b/src/Objects/DataExpress/alsa/src/X86LINUX64ICC/monoSound.c
@@ -0,0 +1 @@
+../monoSound.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/avsFileInit.c b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/avsFileInit.c
new file mode 120000 (symlink)
index 0000000..6380714
--- /dev/null
+++ b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/avsFileInit.c
@@ -0,0 +1 @@
+../avsFileInit.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/avsFileSet.c b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/avsFileSet.c
new file mode 120000 (symlink)
index 0000000..d82bba8
--- /dev/null
+++ b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/avsFileSet.c
@@ -0,0 +1 @@
+../avsFileSet.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/avsFileWrite.c b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/avsFileWrite.c
new file mode 120000 (symlink)
index 0000000..ff1149b
--- /dev/null
+++ b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/avsFileWrite.c
@@ -0,0 +1 @@
+../avsFileWrite.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.a b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.a
index 5ca4788..561bdce 100644 (file)
Binary files a/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.a and b/src/Objects/DataExpress/avsFile/src/X86LINUX64ICC/libavsFile.a differ

diff --git a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/decoder.c b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/decoder.c
new file mode 120000 (symlink)
index 0000000..07fbb50
--- /dev/null
+++ b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/decoder.c
@@ -0,0 +1 @@
+../decoder.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifFileInit.c b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifFileInit.c
new file mode 120000 (symlink)
index 0000000..eae31c0
--- /dev/null
+++ b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifFileInit.c
@@ -0,0 +1 @@
+../gifFileInit.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifFileWrite.c b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifFileWrite.c
new file mode 120000 (symlink)
index 0000000..5984bba
--- /dev/null
+++ b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifFileWrite.c
@@ -0,0 +1 @@
+../gifFileWrite.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifUtil.c b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifUtil.c
new file mode 120000 (symlink)
index 0000000..f2cc61b
--- /dev/null
+++ b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifUtil.c
@@ -0,0 +1 @@
+../gifUtil.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifcompr.c b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifcompr.c
new file mode 120000 (symlink)
index 0000000..358bf34
--- /dev/null
+++ b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifcompr.c
@@ -0,0 +1 @@
+../gifcompr.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifencod.c b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifencod.c
new file mode 120000 (symlink)
index 0000000..350b994
--- /dev/null
+++ b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/gifencod.c
@@ -0,0 +1 @@
+../gifencod.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.a b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.a
index c472fd9..f784264 100644 (file)
Binary files a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.a and b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/libgifFile.a differ

diff --git a/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/lmrc2gif.c b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/lmrc2gif.c
new file mode 120000 (symlink)
index 0000000..04e5f38
--- /dev/null
+++ b/src/Objects/DataExpress/gifFile/src/X86LINUX64ICC/lmrc2gif.c
@@ -0,0 +1 @@
+../lmrc2gif.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/density_sphere.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/density_sphere.c
new file mode 120000 (symlink)
index 0000000..f161bb1
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/density_sphere.c
@@ -0,0 +1 @@
+../density_sphere.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/drawWireFrame.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/drawWireFrame.c
new file mode 120000 (symlink)
index 0000000..2043468
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/drawWireFrame.c
@@ -0,0 +1 @@
+../drawWireFrame.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.a b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.a
index a06cb86..f293a2a 100644 (file)
Binary files a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.a and b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/libopenGL.a differ

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieCamera.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieCamera.c
new file mode 120000 (symlink)
index 0000000..8faeebc
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieCamera.c
@@ -0,0 +1 @@
+../lmolvieCamera.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayLib.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayLib.c
new file mode 120000 (symlink)
index 0000000..97f96eb
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayLib.c
@@ -0,0 +1 @@
+../lmolvieDisplayLib.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayListMake.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayListMake.c
new file mode 120000 (symlink)
index 0000000..af7e340
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayListMake.c
@@ -0,0 +1 @@
+../lmolvieDisplayListMake.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayNormal.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayNormal.c
new file mode 120000 (symlink)
index 0000000..f6f97a9
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayNormal.c
@@ -0,0 +1 @@
+../lmolvieDisplayNormal.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayParallel.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayParallel.c
new file mode 120000 (symlink)
index 0000000..3ddc8f1
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDisplayParallel.c
@@ -0,0 +1 @@
+../lmolvieDisplayParallel.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDockDisplay.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDockDisplay.c
new file mode 120000 (symlink)
index 0000000..7b852c1
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDockDisplay.c
@@ -0,0 +1 @@
+../lmolvieDockDisplay.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDockKeyboard.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDockKeyboard.c
new file mode 120000 (symlink)
index 0000000..b2a2deb
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieDockKeyboard.c
@@ -0,0 +1 @@
+../lmolvieDockKeyboard.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieFlightDisplay.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieFlightDisplay.c
new file mode 120000 (symlink)
index 0000000..0d98b99
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieFlightDisplay.c
@@ -0,0 +1 @@
+../lmolvieFlightDisplay.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieFlightIdle.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieFlightIdle.c
new file mode 120000 (symlink)
index 0000000..372dbae
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieFlightIdle.c
@@ -0,0 +1 @@
+../lmolvieFlightIdle.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieFlightKeyboard.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieFlightKeyboard.c
new file mode 120000 (symlink)
index 0000000..6d4c0c4
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieFlightKeyboard.c
@@ -0,0 +1 @@
+../lmolvieFlightKeyboard.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieIdleNormal.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieIdleNormal.c
new file mode 120000 (symlink)
index 0000000..2a010f9
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieIdleNormal.c
@@ -0,0 +1 @@
+../lmolvieIdleNormal.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieInitNormal.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieInitNormal.c
new file mode 120000 (symlink)
index 0000000..a635c5e
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieInitNormal.c
@@ -0,0 +1 @@
+../lmolvieInitNormal.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieInitParallel.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieInitParallel.c
new file mode 120000 (symlink)
index 0000000..39ef140
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieInitParallel.c
@@ -0,0 +1 @@
+../lmolvieInitParallel.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboard.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboard.c
new file mode 120000 (symlink)
index 0000000..7e2ae56
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboard.c
@@ -0,0 +1 @@
+../lmolvieKeyboard.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardDrive.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardDrive.c
new file mode 120000 (symlink)
index 0000000..6a3fe6a
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardDrive.c
@@ -0,0 +1 @@
+../lmolvieKeyboardDrive.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardMulti.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardMulti.c
new file mode 120000 (symlink)
index 0000000..5cc2eef
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardMulti.c
@@ -0,0 +1 @@
+../lmolvieKeyboardMulti.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardNormal.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardNormal.c
new file mode 120000 (symlink)
index 0000000..eba0c0c
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardNormal.c
@@ -0,0 +1 @@
+../lmolvieKeyboardNormal.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardParallel.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardParallel.c
new file mode 120000 (symlink)
index 0000000..deba5ac
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardParallel.c
@@ -0,0 +1 @@
+../lmolvieKeyboardParallel.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardSurface.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardSurface.c
new file mode 120000 (symlink)
index 0000000..97ecc35
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieKeyboardSurface.c
@@ -0,0 +1 @@
+../lmolvieKeyboardSurface.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieLight.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieLight.c
new file mode 120000 (symlink)
index 0000000..a156d11
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieLight.c
@@ -0,0 +1 @@
+../lmolvieLight.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMRCread.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMRCread.c
new file mode 120000 (symlink)
index 0000000..11d63bd
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMRCread.c
@@ -0,0 +1 @@
+../lmolvieMRCread.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouse.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouse.c
new file mode 120000 (symlink)
index 0000000..3fbf1fa
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouse.c
@@ -0,0 +1 @@
+../lmolvieMouse.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseDrive.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseDrive.c
new file mode 120000 (symlink)
index 0000000..af06a28
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseDrive.c
@@ -0,0 +1 @@
+../lmolvieMouseDrive.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseMulti.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseMulti.c
new file mode 120000 (symlink)
index 0000000..3187f97
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseMulti.c
@@ -0,0 +1 @@
+../lmolvieMouseMulti.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseNormal.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseNormal.c
new file mode 120000 (symlink)
index 0000000..fa98e0c
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseNormal.c
@@ -0,0 +1 @@
+../lmolvieMouseNormal.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseParallel.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseParallel.c
new file mode 120000 (symlink)
index 0000000..ef5bb51
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMouseParallel.c
@@ -0,0 +1 @@
+../lmolvieMouseParallel.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMrcViewerDisplay.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMrcViewerDisplay.c
new file mode 120000 (symlink)
index 0000000..40a4d51
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMrcViewerDisplay.c
@@ -0,0 +1 @@
+../lmolvieMrcViewerDisplay.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMrcViewerKeyboard.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMrcViewerKeyboard.c
new file mode 120000 (symlink)
index 0000000..a2aef75
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMrcViewerKeyboard.c
@@ -0,0 +1 @@
+../lmolvieMrcViewerKeyboard.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMrcViewerMouse.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMrcViewerMouse.c
new file mode 120000 (symlink)
index 0000000..ea7238b
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieMrcViewerMouse.c
@@ -0,0 +1 @@
+../lmolvieMrcViewerMouse.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieOperation.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieOperation.c
new file mode 120000 (symlink)
index 0000000..992106d
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieOperation.c
@@ -0,0 +1 @@
+../lmolvieOperation.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolviePDBread.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolviePDBread.c
new file mode 120000 (symlink)
index 0000000..0bb57df
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolviePDBread.c
@@ -0,0 +1 @@
+../lmolviePDBread.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProjectionKeyboard.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProjectionKeyboard.c
new file mode 120000 (symlink)
index 0000000..7303cf9
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProjectionKeyboard.c
@@ -0,0 +1 @@
+../lmolvieProjectionKeyboard.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProjectionMouse.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProjectionMouse.c
new file mode 120000 (symlink)
index 0000000..85fc6f8
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProjectionMouse.c
@@ -0,0 +1 @@
+../lmolvieProjectionMouse.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProteinStatus.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProteinStatus.c
new file mode 120000 (symlink)
index 0000000..149d8e7
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieProteinStatus.c
@@ -0,0 +1 @@
+../lmolvieProteinStatus.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieReshapeNormal.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieReshapeNormal.c
new file mode 120000 (symlink)
index 0000000..ad84c86
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieReshapeNormal.c
@@ -0,0 +1 @@
+../lmolvieReshapeNormal.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieReshapeParallel.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieReshapeParallel.c
new file mode 120000 (symlink)
index 0000000..9c01974
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieReshapeParallel.c
@@ -0,0 +1 @@
+../lmolvieReshapeParallel.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieTest.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieTest.c
new file mode 120000 (symlink)
index 0000000..e7fdad7
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieTest.c
@@ -0,0 +1 @@
+../lmolvieTest.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieTexture.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieTexture.c
new file mode 120000 (symlink)
index 0000000..a807d5a
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieTexture.c
@@ -0,0 +1 @@
+../lmolvieTexture.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerDisplay.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerDisplay.c
new file mode 120000 (symlink)
index 0000000..776fdcc
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerDisplay.c
@@ -0,0 +1 @@
+../lmolvieViewerDisplay.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerIdle.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerIdle.c
new file mode 120000 (symlink)
index 0000000..0fae598
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerIdle.c
@@ -0,0 +1 @@
+../lmolvieViewerIdle.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerKeyboard.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerKeyboard.c
new file mode 120000 (symlink)
index 0000000..9128480
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerKeyboard.c
@@ -0,0 +1 @@
+../lmolvieViewerKeyboard.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerMouse.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerMouse.c
new file mode 120000 (symlink)
index 0000000..9ba39b9
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerMouse.c
@@ -0,0 +1 @@
+../lmolvieViewerMouse.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerSpecial.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerSpecial.c
new file mode 120000 (symlink)
index 0000000..84a4a78
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieViewerSpecial.c
@@ -0,0 +1 @@
+../lmolvieViewerSpecial.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieVoice.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieVoice.c
new file mode 120000 (symlink)
index 0000000..ed0c433
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/lmolvieVoice.c
@@ -0,0 +1 @@
+../lmolvieVoice.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/loadPDB.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/loadPDB.c
new file mode 120000 (symlink)
index 0000000..64b51df
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/loadPDB.c
@@ -0,0 +1 @@
+../loadPDB.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/loadPPM.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/loadPPM.c
new file mode 120000 (symlink)
index 0000000..0f3c0f3
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/loadPPM.c
@@ -0,0 +1 @@
+../loadPPM.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/marching_cubes.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/marching_cubes.c
new file mode 120000 (symlink)
index 0000000..5cf7baa
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/marching_cubes.c
@@ -0,0 +1 @@
+../marching_cubes.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/multiPDB.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/multiPDB.c
new file mode 120000 (symlink)
index 0000000..7801bad
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/multiPDB.c
@@ -0,0 +1 @@
+../multiPDB.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/openGLKey.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/openGLKey.c
new file mode 120000 (symlink)
index 0000000..747e8c9
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/openGLKey.c
@@ -0,0 +1 @@
+../openGLKey.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/savePPM.c b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/savePPM.c
new file mode 120000 (symlink)
index 0000000..c327461
--- /dev/null
+++ b/src/Objects/DataExpress/openGL/src/X86LINUX64ICC/savePPM.c
@@ -0,0 +1 @@
+../savePPM.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.a b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.a
index 07843d5..e528621 100644 (file)
Binary files a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.a and b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/libpsFile.a differ

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileCircle.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileCircle.c
new file mode 120000 (symlink)
index 0000000..87fab80
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileCircle.c
@@ -0,0 +1 @@
+../psFileCircle.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileContour.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileContour.c
new file mode 120000 (symlink)
index 0000000..0061bbe
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileContour.c
@@ -0,0 +1 @@
+../psFileContour.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileContour3D.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileContour3D.c
new file mode 120000 (symlink)
index 0000000..8ce1c7c
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileContour3D.c
@@ -0,0 +1 @@
+../psFileContour3D.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileEnd.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileEnd.c
new file mode 120000 (symlink)
index 0000000..282ce38
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileEnd.c
@@ -0,0 +1 @@
+../psFileEnd.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileImage.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileImage.c
new file mode 120000 (symlink)
index 0000000..ad9f597
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileImage.c
@@ -0,0 +1 @@
+../psFileImage.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileInit.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileInit.c
new file mode 120000 (symlink)
index 0000000..bced786
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileInit.c
@@ -0,0 +1 @@
+../psFileInit.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileLine.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileLine.c
new file mode 120000 (symlink)
index 0000000..695bd99
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileLine.c
@@ -0,0 +1 @@
+../psFileLine.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFilePage.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFilePage.c
new file mode 120000 (symlink)
index 0000000..376afb3
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFilePage.c
@@ -0,0 +1 @@
+../psFilePage.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileRead.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileRead.c
new file mode 120000 (symlink)
index 0000000..f59faeb
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileRead.c
@@ -0,0 +1 @@
+../psFileRead.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileString.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileString.c
new file mode 120000 (symlink)
index 0000000..32242ca
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileString.c
@@ -0,0 +1 @@
+../psFileString.c
\ No newline at end of file

diff --git a/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileUtil.c b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileUtil.c
new file mode 120000 (symlink)
index 0000000..f74555d
--- /dev/null
+++ b/src/Objects/DataExpress/psFile/src/X86LINUX64ICC/psFileUtil.c
@@ -0,0 +1 @@
+../psFileUtil.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/dcd.cc b/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/dcd.cc
new file mode 120000 (symlink)
index 0000000..dc203e1
--- /dev/null
+++ b/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/dcd.cc
@@ -0,0 +1 @@
+../dcd.cc
\ No newline at end of file

diff --git a/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/libDCDFile.a b/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/libDCDFile.a
index 8399673..3e1aab1 100644 (file)
Binary files a/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/libDCDFile.a and b/src/Objects/DataManip/DCDFile/src/X86LINUX64ICC/libDCDFile.a differ

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.1.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.1.c
new file mode 120000 (symlink)
index 0000000..1087717
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.1.c
@@ -0,0 +1 @@
+../10.1.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.2.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.2.c
new file mode 120000 (symlink)
index 0000000..d08887e
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.2.c
@@ -0,0 +1 @@
+../10.2.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.5.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.5.c
new file mode 120000 (symlink)
index 0000000..b282c71
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.5.c
@@ -0,0 +1 @@
+../10.5.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.6.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.6.c
new file mode 120000 (symlink)
index 0000000..2870eb8
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.6.c
@@ -0,0 +1 @@
+../10.6.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.7.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.7.c
new file mode 120000 (symlink)
index 0000000..cc0d23a
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/10.7.c
@@ -0,0 +1 @@
+../10.7.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/11.1.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/11.1.c
new file mode 120000 (symlink)
index 0000000..35324ce
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/11.1.c
@@ -0,0 +1 @@
+../11.1.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/13.10.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/13.10.c
new file mode 120000 (symlink)
index 0000000..e0fafd3
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/13.10.c
@@ -0,0 +1 @@
+../13.10.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.2.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.2.c
new file mode 120000 (symlink)
index 0000000..e93e285
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.2.c
@@ -0,0 +1 @@
+../15.2.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.4.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.4.c
new file mode 120000 (symlink)
index 0000000..366ea02
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.4.c
@@ -0,0 +1 @@
+../15.4.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.5.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.5.c
new file mode 120000 (symlink)
index 0000000..97d0351
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.5.c
@@ -0,0 +1 @@
+../15.5.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.7.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.7.c
new file mode 120000 (symlink)
index 0000000..1406d2a
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/15.7.c
@@ -0,0 +1 @@
+../15.7.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/2.1.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/2.1.c
new file mode 120000 (symlink)
index 0000000..e715868
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/2.1.c
@@ -0,0 +1 @@
+../2.1.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/2.3.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/2.3.c
new file mode 120000 (symlink)
index 0000000..27ec090
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/2.3.c
@@ -0,0 +1 @@
+../2.3.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/6.1.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/6.1.c
new file mode 120000 (symlink)
index 0000000..dba1140
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/6.1.c
@@ -0,0 +1 @@
+../6.1.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/6.2.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/6.2.c
new file mode 120000 (symlink)
index 0000000..5dd828d
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/6.2.c
@@ -0,0 +1 @@
+../6.2.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/6.4.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/6.4.c
new file mode 120000 (symlink)
index 0000000..96b568c
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/6.4.c
@@ -0,0 +1 @@
+../6.4.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/8.2.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/8.2.c
new file mode 120000 (symlink)
index 0000000..a67abac
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/8.2.c
@@ -0,0 +1 @@
+../8.2.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/8.5.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/8.5.c
new file mode 120000 (symlink)
index 0000000..12a3779
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/8.5.c
@@ -0,0 +1 @@
+../8.5.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.a b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.a
index bba1f4f..5f77ec3 100644 (file)
Binary files a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.a and b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/libMATH.a differ

diff --git a/src/Objects/DataManip/MATH/src/X86LINUX64ICC/nr2util.c b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/nr2util.c
new file mode 120000 (symlink)
index 0000000..6fbf579
--- /dev/null
+++ b/src/Objects/DataManip/MATH/src/X86LINUX64ICC/nr2util.c
@@ -0,0 +1 @@
+../nr2util.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfDeterminationFromPhaseComparison.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfDeterminationFromPhaseComparison.c
new file mode 120000 (symlink)
index 0000000..0042ffd
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfDeterminationFromPhaseComparison.c
@@ -0,0 +1 @@
+../ctfDeterminationFromPhaseComparison.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfFunction.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfFunction.c
new file mode 120000 (symlink)
index 0000000..7c2d448
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfFunction.c
@@ -0,0 +1 @@
+../ctfFunction.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoPVM.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoPVM.c
new file mode 120000 (symlink)
index 0000000..9ef3aef
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoPVM.c
@@ -0,0 +1 @@
+../ctfInfoPVM.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoRead.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoRead.c
new file mode 120000 (symlink)
index 0000000..e386449
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoRead.c
@@ -0,0 +1 @@
+../ctfInfoRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoWrite.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoWrite.c
new file mode 120000 (symlink)
index 0000000..c95aca5
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoWrite.c
@@ -0,0 +1 @@
+../ctfInfoWrite.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoWrite2.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoWrite2.c
new file mode 120000 (symlink)
index 0000000..d47d86c
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfInfoWrite2.c
@@ -0,0 +1 @@
+../ctfInfoWrite2.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfWeight.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfWeight.c
new file mode 120000 (symlink)
index 0000000..5f01c22
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfWeight.c
@@ -0,0 +1 @@
+../ctfWeight.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfZeroPoint.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfZeroPoint.c
new file mode 120000 (symlink)
index 0000000..2bf4587
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/ctfZeroPoint.c
@@ -0,0 +1 @@
+../ctfZeroPoint.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lastigmatismDetection.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lastigmatismDetection.c
new file mode 120000 (symlink)
index 0000000..da17f57
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lastigmatismDetection.c
@@ -0,0 +1 @@
+../lastigmatismDetection.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lctfDetermination.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lctfDetermination.c
new file mode 120000 (symlink)
index 0000000..9d3e75b
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lctfDetermination.c
@@ -0,0 +1 @@
+../lctfDetermination.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lctfDetermine.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lctfDetermine.c
new file mode 120000 (symlink)
index 0000000..108afda
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lctfDetermine.c
@@ -0,0 +1 @@
+../lctfDetermine.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.a b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.a
index 6d887d6..3c68a08 100644 (file)
Binary files a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.a and b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/libctfInfo.a differ

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lmolecularEnvelope.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lmolecularEnvelope.c
new file mode 120000 (symlink)
index 0000000..5bf7d78
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lmolecularEnvelope.c
@@ -0,0 +1 @@
+../lmolecularEnvelope.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lmrcFSInfoScatteringAngularDistributionAverageSection.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lmrcFSInfoScatteringAngularDistributionAverageSection.c
new file mode 120000 (symlink)
index 0000000..9ecb3e7
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/lmrcFSInfoScatteringAngularDistributionAverageSection.c
@@ -0,0 +1 @@
+../lmrcFSInfoScatteringAngularDistributionAverageSection.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/powerspectraTangentLine.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/powerspectraTangentLine.c
new file mode 120000 (symlink)
index 0000000..74fc4a9
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/powerspectraTangentLine.c
@@ -0,0 +1 @@
+../powerspectraTangentLine.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/thonRing.c b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/thonRing.c
new file mode 120000 (symlink)
index 0000000..ff482d2
--- /dev/null
+++ b/src/Objects/DataManip/ctfInfo/src/X86LINUX64ICC/thonRing.c
@@ -0,0 +1 @@
+../thonRing.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/dsn6Init.c b/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/dsn6Init.c
new file mode 120000 (symlink)
index 0000000..b947f16
--- /dev/null
+++ b/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/dsn6Init.c
@@ -0,0 +1 @@
+../dsn6Init.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/dsn6Write.c b/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/dsn6Write.c
new file mode 120000 (symlink)
index 0000000..261da9f
--- /dev/null
+++ b/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/dsn6Write.c
@@ -0,0 +1 @@
+../dsn6Write.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.a b/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.a
index a758a76..4245338 100644 (file)
Binary files a/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.a and b/src/Objects/DataManip/dsn6File/src/X86LINUX64ICC/libdsn6File.a differ

diff --git a/src/Objects/DataManip/emData/src/X86LINUX64ICC/emDataRead.c b/src/Objects/DataManip/emData/src/X86LINUX64ICC/emDataRead.c
new file mode 120000 (symlink)
index 0000000..90988ab
--- /dev/null
+++ b/src/Objects/DataManip/emData/src/X86LINUX64ICC/emDataRead.c
@@ -0,0 +1 @@
+../emDataRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.a b/src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.a
index 27bbf42..a0e988e 100644 (file)
Binary files a/src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.a and b/src/Objects/DataManip/emData/src/X86LINUX64ICC/libemData.a differ

diff --git a/src/Objects/DataManip/khorosData/src/X86LINUX64ICC/lmrc2viff.c b/src/Objects/DataManip/khorosData/src/X86LINUX64ICC/lmrc2viff.c
new file mode 120000 (symlink)
index 0000000..858bdde
--- /dev/null
+++ b/src/Objects/DataManip/khorosData/src/X86LINUX64ICC/lmrc2viff.c
@@ -0,0 +1 @@
+../lmrc2viff.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/largeIPRead.c b/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/largeIPRead.c
new file mode 120000 (symlink)
index 0000000..473de68
--- /dev/null
+++ b/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/largeIPRead.c
@@ -0,0 +1 @@
+../largeIPRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/liblargeIP.so b/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/liblargeIP.so
index 1d2806e..366bb58 100755 (executable)
Binary files a/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/liblargeIP.so and b/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/liblargeIP.so differ

diff --git a/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/tkImgFmtlargeIP.c b/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/tkImgFmtlargeIP.c
new file mode 120000 (symlink)
index 0000000..22ec79a
--- /dev/null
+++ b/src/Objects/DataManip/largeIP/src/X86LINUX64ICC/tkImgFmtlargeIP.c
@@ -0,0 +1 @@
+../tkImgFmtlargeIP.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.a b/src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.a
index 0a86ca5..4f3b4ef 100644 (file)
Binary files a/src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.a and b/src/Objects/DataManip/llData/src/X86LINUX64ICC/libllData.a differ

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataCheck.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataCheck.c
new file mode 120000 (symlink)
index 0000000..c5f86b3
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataCheck.c
@@ -0,0 +1 @@
+../llDataCheck.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataETC.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataETC.c
new file mode 120000 (symlink)
index 0000000..0f3ed02
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataETC.c
@@ -0,0 +1 @@
+../llDataETC.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataError.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataError.c
new file mode 120000 (symlink)
index 0000000..5b7d5f5
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataError.c
@@ -0,0 +1 @@
+../llDataError.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataGet.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataGet.c
new file mode 120000 (symlink)
index 0000000..bb27824
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataGet.c
@@ -0,0 +1 @@
+../llDataGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataInfo.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataInfo.c
new file mode 120000 (symlink)
index 0000000..de52b42
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataInfo.c
@@ -0,0 +1 @@
+../llDataInfo.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataInit.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataInit.c
new file mode 120000 (symlink)
index 0000000..1f7eee4
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataInit.c
@@ -0,0 +1 @@
+../llDataInit.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataIntensityInformationGet.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataIntensityInformationGet.c
new file mode 120000 (symlink)
index 0000000..c40f4ae
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataIntensityInformationGet.c
@@ -0,0 +1 @@
+../llDataIntensityInformationGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataPVM.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataPVM.c
new file mode 120000 (symlink)
index 0000000..769c13a
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataPVM.c
@@ -0,0 +1 @@
+../llDataPVM.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataRead.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataRead.c
new file mode 120000 (symlink)
index 0000000..2c342bd
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataRead.c
@@ -0,0 +1 @@
+../llDataRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataSet.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataSet.c
new file mode 120000 (symlink)
index 0000000..57e7160
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataSet.c
@@ -0,0 +1 @@
+../llDataSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataUtil.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataUtil.c
new file mode 120000 (symlink)
index 0000000..d8b0b14
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataUtil.c
@@ -0,0 +1 @@
+../llDataUtil.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataWrite.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataWrite.c
new file mode 120000 (symlink)
index 0000000..cc57d62
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/llDataWrite.c
@@ -0,0 +1 @@
+../llDataWrite.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lll2ltlg.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lll2ltlg.c
new file mode 120000 (symlink)
index 0000000..6460e62
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lll2ltlg.c
@@ -0,0 +1 @@
+../lll2ltlg.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAdd.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAdd.c
new file mode 120000 (symlink)
index 0000000..c7b8e5e
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAdd.c
@@ -0,0 +1 @@
+../lllDataAdd.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAverage.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAverage.c
new file mode 120000 (symlink)
index 0000000..5c6ef61
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAverage.c
@@ -0,0 +1 @@
+../lllDataAverage.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAvgTo.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAvgTo.c
new file mode 120000 (symlink)
index 0000000..e26bd14
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAvgTo.c
@@ -0,0 +1 @@
+../lllDataAvgTo.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearch.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearch.c
new file mode 120000 (symlink)
index 0000000..de90920
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearch.c
@@ -0,0 +1 @@
+../lllDataAxisSearch.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearch2.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearch2.c
new file mode 120000 (symlink)
index 0000000..7304f67
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearch2.c
@@ -0,0 +1 @@
+../lllDataAxisSearch2.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearchAndAverage.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearchAndAverage.c
new file mode 120000 (symlink)
index 0000000..a6851b8
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataAxisSearchAndAverage.c
@@ -0,0 +1 @@
+../lllDataAxisSearchAndAverage.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataCTFCompensate.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataCTFCompensate.c
new file mode 120000 (symlink)
index 0000000..f62145d
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataCTFCompensate.c
@@ -0,0 +1 @@
+../lllDataCTFCompensate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataCTFObservation.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataCTFObservation.c
new file mode 120000 (symlink)
index 0000000..5bd141d
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataCTFObservation.c
@@ -0,0 +1 @@
+../lllDataCTFObservation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataCompare.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataCompare.c
new file mode 120000 (symlink)
index 0000000..60a1b6e
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataCompare.c
@@ -0,0 +1 @@
+../lllDataCompare.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataContributionCalcDifferentN.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataContributionCalcDifferentN.c
new file mode 120000 (symlink)
index 0000000..ecf97d2
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataContributionCalcDifferentN.c
@@ -0,0 +1 @@
+../lllDataContributionCalcDifferentN.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataDifferenceCalc.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataDifferenceCalc.c
new file mode 120000 (symlink)
index 0000000..0fcf356
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataDifferenceCalc.c
@@ -0,0 +1 @@
+../lllDataDifferenceCalc.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataEquatorAdd.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataEquatorAdd.c
new file mode 120000 (symlink)
index 0000000..ea25fdd
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataEquatorAdd.c
@@ -0,0 +1 @@
+../lllDataEquatorAdd.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataExtract.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataExtract.c
new file mode 120000 (symlink)
index 0000000..3cc580e
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataExtract.c
@@ -0,0 +1 @@
+../lllDataExtract.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFit.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFit.c
new file mode 120000 (symlink)
index 0000000..bc0a3dc
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFit.c
@@ -0,0 +1 @@
+../lllDataFit.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFit2.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFit2.c
new file mode 120000 (symlink)
index 0000000..d4e0615
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFit2.c
@@ -0,0 +1 @@
+../lllDataFit2.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitAndAverage.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitAndAverage.c
new file mode 120000 (symlink)
index 0000000..5a6fd69
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitAndAverage.c
@@ -0,0 +1 @@
+../lllDataFitAndAverage.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitMergedLL.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitMergedLL.c
new file mode 120000 (symlink)
index 0000000..59adb34
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitMergedLL.c
@@ -0,0 +1 @@
+../lllDataFitMergedLL.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitOut.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitOut.c
new file mode 120000 (symlink)
index 0000000..56da6ef
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitOut.c
@@ -0,0 +1 @@
+../lllDataFitOut.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitParamInverse.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitParamInverse.c
new file mode 120000 (symlink)
index 0000000..d600eb8
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitParamInverse.c
@@ -0,0 +1 @@
+../lllDataFitParamInverse.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitUtil.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitUtil.c
new file mode 120000 (symlink)
index 0000000..d213544
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitUtil.c
@@ -0,0 +1 @@
+../lllDataFitUtil.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitUtilPVM.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitUtilPVM.c
new file mode 120000 (symlink)
index 0000000..e51c12e
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataFitUtilPVM.c
@@ -0,0 +1 @@
+../lllDataFitUtilPVM.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataInterpolate.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataInterpolate.c
new file mode 120000 (symlink)
index 0000000..e389322
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataInterpolate.c
@@ -0,0 +1 @@
+../lllDataInterpolate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataLowPassFiltering.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataLowPassFiltering.c
new file mode 120000 (symlink)
index 0000000..d3ea8b7
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataLowPassFiltering.c
@@ -0,0 +1 @@
+../lllDataLowPassFiltering.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataMergeDifferentN.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataMergeDifferentN.c
new file mode 120000 (symlink)
index 0000000..b640c13
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataMergeDifferentN.c
@@ -0,0 +1 @@
+../lllDataMergeDifferentN.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataMultiCTFCompensation.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataMultiCTFCompensation.c
new file mode 120000 (symlink)
index 0000000..2df4487
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataMultiCTFCompensation.c
@@ -0,0 +1 @@
+../lllDataMultiCTFCompensation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataPhaseShift.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataPhaseShift.c
new file mode 120000 (symlink)
index 0000000..7914313
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataPhaseShift.c
@@ -0,0 +1 @@
+../lllDataPhaseShift.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataPrint.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataPrint.c
new file mode 120000 (symlink)
index 0000000..a778193
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataPrint.c
@@ -0,0 +1 @@
+../lllDataPrint.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataRescaling.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataRescaling.c
new file mode 120000 (symlink)
index 0000000..6a601fd
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataRescaling.c
@@ -0,0 +1 @@
+../lllDataRescaling.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataSingleCTFCompensation.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataSingleCTFCompensation.c
new file mode 120000 (symlink)
index 0000000..83d8e2f
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataSingleCTFCompensation.c
@@ -0,0 +1 @@
+../lllDataSingleCTFCompensation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataWeightSet.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataWeightSet.c
new file mode 120000 (symlink)
index 0000000..0d1ad87
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDataWeightSet.c
@@ -0,0 +1 @@
+../lllDataWeightSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDatarMaxLimit.c b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDatarMaxLimit.c
new file mode 120000 (symlink)
index 0000000..8a705ee
--- /dev/null
+++ b/src/Objects/DataManip/llData/src/X86LINUX64ICC/lllDatarMaxLimit.c
@@ -0,0 +1 @@
+../lllDatarMaxLimit.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.a b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.a
index f106646..1811426 100644 (file)
Binary files a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.a and b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/libltlgData.a differ

diff --git a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/lltlg2mrc.c b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/lltlg2mrc.c
new file mode 120000 (symlink)
index 0000000..e5b966a
--- /dev/null
+++ b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/lltlg2mrc.c
@@ -0,0 +1 @@
+../lltlg2mrc.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataAllocate.c b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataAllocate.c
new file mode 120000 (symlink)
index 0000000..eec4601
--- /dev/null
+++ b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataAllocate.c
@@ -0,0 +1 @@
+../ltlgDataAllocate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataGet.c b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataGet.c
new file mode 120000 (symlink)
index 0000000..99b232a
--- /dev/null
+++ b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataGet.c
@@ -0,0 +1 @@
+../ltlgDataGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataPrint.c b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataPrint.c
new file mode 120000 (symlink)
index 0000000..1917c8e
--- /dev/null
+++ b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataPrint.c
@@ -0,0 +1 @@
+../ltlgDataPrint.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataReadFile.c b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataReadFile.c
new file mode 120000 (symlink)
index 0000000..d43f5fa
--- /dev/null
+++ b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataReadFile.c
@@ -0,0 +1 @@
+../ltlgDataReadFile.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataWeightModify.c b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataWeightModify.c
new file mode 120000 (symlink)
index 0000000..8633b91
--- /dev/null
+++ b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataWeightModify.c
@@ -0,0 +1 @@
+../ltlgDataWeightModify.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataWriteFile.c b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataWriteFile.c
new file mode 120000 (symlink)
index 0000000..7f44364
--- /dev/null
+++ b/src/Objects/DataManip/ltlgData/src/X86LINUX64ICC/ltlgDataWriteFile.c
@@ -0,0 +1 @@
+../ltlgDataWriteFile.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mapFile/src/X86LINUX64ICC/mapFileRead.c b/src/Objects/DataManip/mapFile/src/X86LINUX64ICC/mapFileRead.c
new file mode 120000 (symlink)
index 0000000..810ff7e
--- /dev/null
+++ b/src/Objects/DataManip/mapFile/src/X86LINUX64ICC/mapFileRead.c
@@ -0,0 +1 @@
+../mapFileRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/.Depend b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/.Depend
index 1445ac7..2821669 100644 (file)
--- a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/.Depend
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/.Depend
@@ -4379,14 +4379,15 @@ mrcImageRead.o: mrcImageRead.c /home/people/tacyas/Eos/include/genUtil.h \
  /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
  /usr/include/bits/select.h /usr/include/bits/sigset.h \
  /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
- /usr/include/bits/pthreadtypes.h /usr/include/alloca.h lmrcImagePrint.h \
- ../inc/mrcImage.h /home/people/tacyas/Eos/include/ctfInfo.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/mrcImage.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/psFile.h \
- /home/people/tacyas/Eos/include/File.h ../inc/mrcImage.h
+ /home/people/tacyas/Eos/include/Array.h lmrcImagePrint.h \
+ ../inc/mrcImage.h /home/people/tacyas/Eos/include/psFile.h \
+ /home/people/tacyas/Eos/include/File.h /usr/include/string.h \
+ /usr/include/xlocale.h
 mrcImageSectionGet.o: mrcImageSectionGet.c /usr/include/string.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/fftn.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/fftn.c
new file mode 120000 (symlink)
index 0000000..1ed45e7
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/fftn.c
@@ -0,0 +1 @@
+../fftn.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.a b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.a
index 7fc8003..876546a 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.a and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.a differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.debug.a b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.debug.a
index f002756..d4c66b7 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.debug.a and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.debug.a differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.so b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.so
index f4c660b..6ba933f 100755 (executable)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.so and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/libmrcImage.so differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFETnormalizeBySD.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFETnormalizeBySD.c
new file mode 120000 (symlink)
index 0000000..bc1a39f
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFETnormalizeBySD.c
@@ -0,0 +1 @@
+../lmrcFETnormalizeBySD.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTExpression.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTExpression.c
new file mode 120000 (symlink)
index 0000000..a57004c
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTExpression.c
@@ -0,0 +1 @@
+../lmrcFFTExpression.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTFGconj.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTFGconj.c
new file mode 120000 (symlink)
index 0000000..8c5271d
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTFGconj.c
@@ -0,0 +1 @@
+../lmrcFFTFGconj.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTFxG.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTFxG.c
new file mode 120000 (symlink)
index 0000000..4c245f5
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTFxG.c
@@ -0,0 +1 @@
+../lmrcFFTFxG.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTInfo.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTInfo.c
new file mode 120000 (symlink)
index 0000000..bee0bcb
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcFFTInfo.c
@@ -0,0 +1 @@
+../lmrcFFTInfo.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImage3DWindowing.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImage3DWindowing.c
new file mode 120000 (symlink)
index 0000000..0e59012
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImage3DWindowing.c
@@ -0,0 +1 @@
+../lmrcImage3DWindowing.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAddValue.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAddValue.c
new file mode 120000 (symlink)
index 0000000..555afc7
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAddValue.c
@@ -0,0 +1 @@
+../lmrcImageAddValue.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAsProbability.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAsProbability.c
new file mode 120000 (symlink)
index 0000000..3fb9a18
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAsProbability.c
@@ -0,0 +1 @@
+../lmrcImageAsProbability.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAverage.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAverage.c
new file mode 120000 (symlink)
index 0000000..06588b8
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageAverage.c
@@ -0,0 +1 @@
+../lmrcImageAverage.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBandPassFilter.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBandPassFilter.c
new file mode 120000 (symlink)
index 0000000..d792df9
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBandPassFilter.c
@@ -0,0 +1 @@
+../lmrcImageBandPassFilter.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBilateralFilter.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBilateralFilter.c
new file mode 120000 (symlink)
index 0000000..4b0f6a1
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBilateralFilter.c
@@ -0,0 +1 @@
+../lmrcImageBilateralFilter.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBinarization.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBinarization.c
new file mode 120000 (symlink)
index 0000000..2a01e9b
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBinarization.c
@@ -0,0 +1 @@
+../lmrcImageBinarization.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBoundaryInfo.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBoundaryInfo.c
new file mode 120000 (symlink)
index 0000000..286a2fd
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageBoundaryInfo.c
@@ -0,0 +1 @@
+../lmrcImageBoundaryInfo.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFCompensation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFCompensation.c
new file mode 120000 (symlink)
index 0000000..e21e29f
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFCompensation.c
@@ -0,0 +1 @@
+../lmrcImageCTFCompensation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFDetermination.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFDetermination.c
new file mode 120000 (symlink)
index 0000000..ad02b0f
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFDetermination.c
@@ -0,0 +1 @@
+../lmrcImageCTFDetermination.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFObservation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFObservation.c
new file mode 120000 (symlink)
index 0000000..24d121f
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFObservation.c
@@ -0,0 +1 @@
+../lmrcImageCTFObservation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFSN.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFSN.c
new file mode 120000 (symlink)
index 0000000..08d9b9c
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCTFSN.c
@@ -0,0 +1 @@
+../lmrcImageCTFSN.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCVE.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCVE.c
new file mode 120000 (symlink)
index 0000000..f8d8168
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCVE.c
@@ -0,0 +1 @@
+../lmrcImageCVE.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCalcArea.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCalcArea.c
new file mode 120000 (symlink)
index 0000000..885a726
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCalcArea.c
@@ -0,0 +1 @@
+../lmrcImageCalcArea.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCenterGet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCenterGet.c
new file mode 120000 (symlink)
index 0000000..6b38875
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCenterGet.c
@@ -0,0 +1 @@
+../lmrcImageCenterGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCentre.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCentre.c
new file mode 120000 (symlink)
index 0000000..6aaf4f3
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCentre.c
@@ -0,0 +1 @@
+../lmrcImageCentre.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClosing.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClosing.c
new file mode 120000 (symlink)
index 0000000..326138b
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClosing.c
@@ -0,0 +1 @@
+../lmrcImageClosing.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClusterAnalysis.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClusterAnalysis.c
new file mode 120000 (symlink)
index 0000000..b084203
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageClusterAnalysis.c
@@ -0,0 +1 @@
+../lmrcImageClusterAnalysis.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCommonLine.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCommonLine.c
new file mode 120000 (symlink)
index 0000000..180f5ed
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCommonLine.c
@@ -0,0 +1 @@
+../lmrcImageCommonLine.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageConnection.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageConnection.c
new file mode 120000 (symlink)
index 0000000..b33fbc3
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageConnection.c
@@ -0,0 +1 @@
+../lmrcImageConnection.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageConnectivityNumberCalc.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageConnectivityNumberCalc.c
new file mode 120000 (symlink)
index 0000000..db65d37
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageConnectivityNumberCalc.c
@@ -0,0 +1 @@
+../lmrcImageConnectivityNumberCalc.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageContourSurface.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageContourSurface.c
new file mode 120000 (symlink)
index 0000000..b54779b
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageContourSurface.c
@@ -0,0 +1 @@
+../lmrcImageContourSurface.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageContraction.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageContraction.c
new file mode 120000 (symlink)
index 0000000..7f0a17d
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageContraction.c
@@ -0,0 +1 @@
+../lmrcImageContraction.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelation.c
new file mode 120000 (symlink)
index 0000000..e161680
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelation.c
@@ -0,0 +1 @@
+../lmrcImageCorrelation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelationPVM.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelationPVM.c
new file mode 120000 (symlink)
index 0000000..aa53cfd
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelationPVM.c
@@ -0,0 +1 @@
+../lmrcImageCorrelationPVM.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelationWithCTFCompensation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelationWithCTFCompensation.c
new file mode 120000 (symlink)
index 0000000..fd3572d
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelationWithCTFCompensation.c
@@ -0,0 +1 @@
+../lmrcImageCorrelationWithCTFCompensation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelationinSpace.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelationinSpace.c
new file mode 120000 (symlink)
index 0000000..abe940e
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCorrelationinSpace.c
@@ -0,0 +1 @@
+../lmrcImageCorrelationinSpace.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCrystalCreate.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCrystalCreate.c
new file mode 120000 (symlink)
index 0000000..eb7d0b5
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageCrystalCreate.c
@@ -0,0 +1 @@
+../lmrcImageCrystalCreate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDataMaxAndMinGetByImage.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDataMaxAndMinGetByImage.c
new file mode 120000 (symlink)
index 0000000..7c49e4c
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDataMaxAndMinGetByImage.c
@@ -0,0 +1 @@
+../lmrcImageDataMaxAndMinGetByImage.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDataStraightCopy.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDataStraightCopy.c
new file mode 120000 (symlink)
index 0000000..0097e01
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDataStraightCopy.c
@@ -0,0 +1 @@
+../lmrcImageDataStraightCopy.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDensity.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDensity.c
new file mode 120000 (symlink)
index 0000000..6acbd07
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDensity.c
@@ -0,0 +1 @@
+../lmrcImageDensity.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDensityInverse.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDensityInverse.c
new file mode 120000 (symlink)
index 0000000..8192b41
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDensityInverse.c
@@ -0,0 +1 @@
+../lmrcImageDensityInverse.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDensityNormalizationByImage.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDensityNormalizationByImage.c
new file mode 120000 (symlink)
index 0000000..ff64e1d
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDensityNormalizationByImage.c
@@ -0,0 +1 @@
+../lmrcImageDensityNormalizationByImage.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDilation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDilation.c
new file mode 120000 (symlink)
index 0000000..0b318c5
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDilation.c
@@ -0,0 +1 @@
+../lmrcImageDilation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDistanceConversion.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDistanceConversion.c
new file mode 120000 (symlink)
index 0000000..5b48ba5
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageDistanceConversion.c
@@ -0,0 +1 @@
+../lmrcImageDistanceConversion.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageEdge.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageEdge.c
new file mode 120000 (symlink)
index 0000000..a1b1753
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageEdge.c
@@ -0,0 +1 @@
+../lmrcImageEdge.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageEdgeAverage.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageEdgeAverage.c
new file mode 120000 (symlink)
index 0000000..2fbfbae
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageEdgeAverage.c
@@ -0,0 +1 @@
+../lmrcImageEdgeAverage.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageErosion.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageErosion.c
new file mode 120000 (symlink)
index 0000000..ba43ce1
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageErosion.c
@@ -0,0 +1 @@
+../lmrcImageErosion.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFFT.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFFT.c
new file mode 120000 (symlink)
index 0000000..6635a2c
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFFT.c
@@ -0,0 +1 @@
+../lmrcImageFFT.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFFT.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFFT.sharedo
index 889d729..88a0124 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFFT.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFFT.sharedo differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFOMCalc.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFOMCalc.c
new file mode 120000 (symlink)
index 0000000..7a32a13
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFOMCalc.c
@@ -0,0 +1 @@
+../lmrcImageFOMCalc.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFeatureExtraction.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFeatureExtraction.c
new file mode 120000 (symlink)
index 0000000..30b4938
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFeatureExtraction.c
@@ -0,0 +1 @@
+../lmrcImageFeatureExtraction.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFeatureExtractionCoOccurrence.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFeatureExtractionCoOccurrence.c
new file mode 120000 (symlink)
index 0000000..26748c7
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFeatureExtractionCoOccurrence.c
@@ -0,0 +1 @@
+../lmrcImageFeatureExtractionCoOccurrence.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFeatureExtractionRunLength.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFeatureExtractionRunLength.c
new file mode 120000 (symlink)
index 0000000..4283853
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFeatureExtractionRunLength.c
@@ -0,0 +1 @@
+../lmrcImageFeatureExtractionRunLength.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFilterCreate.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFilterCreate.c
new file mode 120000 (symlink)
index 0000000..c662b2f
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFilterCreate.c
@@ -0,0 +1 @@
+../lmrcImageFilterCreate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFirstNoiseReductionByRelaxation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFirstNoiseReductionByRelaxation.c
new file mode 120000 (symlink)
index 0000000..b1d4572
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFirstNoiseReductionByRelaxation.c
@@ -0,0 +1 @@
+../lmrcImageFirstNoiseReductionByRelaxation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFourierPowerSpectrum.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFourierPowerSpectrum.c
new file mode 120000 (symlink)
index 0000000..8268760
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFourierPowerSpectrum.c
@@ -0,0 +1 @@
+../lmrcImageFourierPowerSpectrum.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFourierShellCorrelation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFourierShellCorrelation.c
new file mode 120000 (symlink)
index 0000000..9dfcffa
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageFourierShellCorrelation.c
@@ -0,0 +1 @@
+../lmrcImageFourierShellCorrelation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageHighPassFilter.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageHighPassFilter.c
new file mode 120000 (symlink)
index 0000000..a6f8499
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageHighPassFilter.c
@@ -0,0 +1 @@
+../lmrcImageHighPassFilter.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageHighlighting.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageHighlighting.c
new file mode 120000 (symlink)
index 0000000..fce0c00
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageHighlighting.c
@@ -0,0 +1 @@
+../lmrcImageHighlighting.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageLabeling.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageLabeling.c
new file mode 120000 (symlink)
index 0000000..8739f8e
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageLabeling.c
@@ -0,0 +1 @@
+../lmrcImageLabeling.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageLowPassFilter.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageLowPassFilter.c
new file mode 120000 (symlink)
index 0000000..fb7c04a
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageLowPassFilter.c
@@ -0,0 +1 @@
+../lmrcImageLowPassFilter.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMasking.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMasking.c
new file mode 120000 (symlink)
index 0000000..715f8fa
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMasking.c
@@ -0,0 +1 @@
+../lmrcImageMasking.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMaxDataGet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMaxDataGet.c
new file mode 120000 (symlink)
index 0000000..1ed0632
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMaxDataGet.c
@@ -0,0 +1 @@
+../lmrcImageMaxDataGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMirroring.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMirroring.c
new file mode 120000 (symlink)
index 0000000..c6590c7
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMirroring.c
@@ -0,0 +1 @@
+../lmrcImageMirroring.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageModeChange.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageModeChange.c
new file mode 120000 (symlink)
index 0000000..63bc43e
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageModeChange.c
@@ -0,0 +1 @@
+../lmrcImageModeChange.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageModelCreate.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageModelCreate.c
new file mode 120000 (symlink)
index 0000000..026eaa0
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageModelCreate.c
@@ -0,0 +1 @@
+../lmrcImageModelCreate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMontageCreate.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMontageCreate.c
new file mode 120000 (symlink)
index 0000000..3ceaabb
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMontageCreate.c
@@ -0,0 +1 @@
+../lmrcImageMontageCreate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMorphology.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMorphology.c
new file mode 120000 (symlink)
index 0000000..842950e
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMorphology.c
@@ -0,0 +1 @@
+../lmrcImageMorphology.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMove.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMove.c
new file mode 120000 (symlink)
index 0000000..b7a8ddd
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMove.c
@@ -0,0 +1 @@
+../lmrcImageMove.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMultiCTFCompensation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMultiCTFCompensation.c
new file mode 120000 (symlink)
index 0000000..2fcdb1b
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMultiCTFCompensation.c
@@ -0,0 +1 @@
+../lmrcImageMultiCTFCompensation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMultiplying.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMultiplying.c
new file mode 120000 (symlink)
index 0000000..b81e8c1
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageMultiplying.c
@@ -0,0 +1 @@
+../lmrcImageMultiplying.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageNormalizing.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageNormalizing.c
new file mode 120000 (symlink)
index 0000000..d05f51e
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageNormalizing.c
@@ -0,0 +1 @@
+../lmrcImageNormalizing.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageOneLineSimilarityCalc.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageOneLineSimilarityCalc.c
new file mode 120000 (symlink)
index 0000000..ab27e21
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageOneLineSimilarityCalc.c
@@ -0,0 +1 @@
+../lmrcImageOneLineSimilarityCalc.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageOpening.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageOpening.c
new file mode 120000 (symlink)
index 0000000..df49f68
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageOpening.c
@@ -0,0 +1 @@
+../lmrcImageOpening.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePad.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePad.c
new file mode 120000 (symlink)
index 0000000..fafd866
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePad.c
@@ -0,0 +1 @@
+../lmrcImagePad.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePartImageSegmentation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePartImageSegmentation.c
new file mode 120000 (symlink)
index 0000000..dbe3020
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePartImageSegmentation.c
@@ -0,0 +1 @@
+../lmrcImagePartImageSegmentation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePixelSummationOfProbabilityGetByImage.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePixelSummationOfProbabilityGetByImage.c
new file mode 120000 (symlink)
index 0000000..d498604
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePixelSummationOfProbabilityGetByImage.c
@@ -0,0 +1 @@
+../lmrcImagePixelSummationOfProbabilityGetByImage.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePosterization.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePosterization.c
new file mode 120000 (symlink)
index 0000000..a8cf27c
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagePosterization.c
@@ -0,0 +1 @@
+../lmrcImagePosterization.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageProjection.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageProjection.c
new file mode 120000 (symlink)
index 0000000..b32ed5d
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageProjection.c
@@ -0,0 +1 @@
+../lmrcImageProjection.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageProportionalDensityLevelSetByImage.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageProportionalDensityLevelSetByImage.c
new file mode 120000 (symlink)
index 0000000..a8af65c
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageProportionalDensityLevelSetByImage.c
@@ -0,0 +1 @@
+../lmrcImageProportionalDensityLevelSetByImage.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROI2D.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROI2D.c
new file mode 120000 (symlink)
index 0000000..51a6632
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROI2D.c
@@ -0,0 +1 @@
+../lmrcImageROI2D.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROI3D.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROI3D.c
new file mode 120000 (symlink)
index 0000000..6c2c2a0
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROI3D.c
@@ -0,0 +1 @@
+../lmrcImageROI3D.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROInotChangeHeaderLength.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROInotChangeHeaderLength.c
new file mode 120000 (symlink)
index 0000000..ae7e8de
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageROInotChangeHeaderLength.c
@@ -0,0 +1 @@
+../lmrcImageROInotChangeHeaderLength.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRadialDistribution.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRadialDistribution.c
new file mode 120000 (symlink)
index 0000000..6cb98f1
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRadialDistribution.c
@@ -0,0 +1 @@
+../lmrcImageRadialDistribution.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRhoFiltering.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRhoFiltering.c
new file mode 120000 (symlink)
index 0000000..234c4d3
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRhoFiltering.c
@@ -0,0 +1 @@
+../lmrcImageRhoFiltering.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRhoFiltering.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRhoFiltering.sharedo
index cc1082e..a798097 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRhoFiltering.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRhoFiltering.sharedo differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRotation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRotation.c
new file mode 120000 (symlink)
index 0000000..ecf5047
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageRotation.c
@@ -0,0 +1 @@
+../lmrcImageRotation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSSDA.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSSDA.c
new file mode 120000 (symlink)
index 0000000..0c2b2c7
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSSDA.c
@@ -0,0 +1 @@
+../lmrcImageSSDA.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSamplingUnitChange.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSamplingUnitChange.c
new file mode 120000 (symlink)
index 0000000..81811fc
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSamplingUnitChange.c
@@ -0,0 +1 @@
+../lmrcImageSamplingUnitChange.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxation.c
new file mode 120000 (symlink)
index 0000000..11fce40
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxation.c
@@ -0,0 +1 @@
+../lmrcImageSecondNoiseReductionByRelaxation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijDimensionSet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijDimensionSet.c
new file mode 120000 (symlink)
index 0000000..a02a6e2
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijDimensionSet.c
@@ -0,0 +1 @@
+../lmrcImageSecondNoiseReductionByRelaxationDijDimensionSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.c
new file mode 120000 (symlink)
index 0000000..133f208
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.c
@@ -0,0 +1 @@
+../lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijValueSet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijValueSet.c
new file mode 120000 (symlink)
index 0000000..3c1230d
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationDijValueSet.c
@@ -0,0 +1 @@
+../lmrcImageSecondNoiseReductionByRelaxationDijValueSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationQValueSet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationQValueSet.c
new file mode 120000 (symlink)
index 0000000..64c9ac5
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationQValueSet.c
@@ -0,0 +1 @@
+../lmrcImageSecondNoiseReductionByRelaxationQValueSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationRValueSet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationRValueSet.c
new file mode 120000 (symlink)
index 0000000..e0e2b49
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSecondNoiseReductionByRelaxationRValueSet.c
@@ -0,0 +1 @@
+../lmrcImageSecondNoiseReductionByRelaxationRValueSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageShapePCA.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageShapePCA.c
new file mode 120000 (symlink)
index 0000000..eaaff92
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageShapePCA.c
@@ -0,0 +1 @@
+../lmrcImageShapePCA.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageShift.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageShift.c
new file mode 120000 (symlink)
index 0000000..b5d3a3b
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageShift.c
@@ -0,0 +1 @@
+../lmrcImageShift.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageShrink.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageShrink.c
new file mode 120000 (symlink)
index 0000000..d657c44
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageShrink.c
@@ -0,0 +1 @@
+../lmrcImageShrink.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSigmaCalculate.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSigmaCalculate.c
new file mode 120000 (symlink)
index 0000000..3734c0f
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSigmaCalculate.c
@@ -0,0 +1 @@
+../lmrcImageSigmaCalculate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSinogram.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSinogram.c
new file mode 120000 (symlink)
index 0000000..9106aa7
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSinogram.c
@@ -0,0 +1 @@
+../lmrcImageSinogram.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSinogramCorrelation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSinogramCorrelation.c
new file mode 120000 (symlink)
index 0000000..67dcc26
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSinogramCorrelation.c
@@ -0,0 +1 @@
+../lmrcImageSinogramCorrelation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSinogramFFT.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSinogramFFT.c
new file mode 120000 (symlink)
index 0000000..d17d8f9
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSinogramFFT.c
@@ -0,0 +1 @@
+../lmrcImageSinogramFFT.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSmoothing.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSmoothing.c
new file mode 120000 (symlink)
index 0000000..45f9e89
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSmoothing.c
@@ -0,0 +1 @@
+../lmrcImageSmoothing.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSolventFlattening.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSolventFlattening.c
new file mode 120000 (symlink)
index 0000000..9a77803
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSolventFlattening.c
@@ -0,0 +1 @@
+../lmrcImageSolventFlattening.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSphere.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSphere.c
new file mode 120000 (symlink)
index 0000000..e7e5515
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSphere.c
@@ -0,0 +1 @@
+../lmrcImageSphere.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSplit.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSplit.c
new file mode 120000 (symlink)
index 0000000..3e72d2b
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSplit.c
@@ -0,0 +1 @@
+../lmrcImageSplit.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageStudentCalculate.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageStudentCalculate.c
new file mode 120000 (symlink)
index 0000000..f2ba81b
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageStudentCalculate.c
@@ -0,0 +1 @@
+../lmrcImageStudentCalculate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSubtractionCalc.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSubtractionCalc.c
new file mode 120000 (symlink)
index 0000000..cb5ccea
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSubtractionCalc.c
@@ -0,0 +1 @@
+../lmrcImageSubtractionCalc.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSummationCalculate.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSummationCalculate.c
new file mode 120000 (symlink)
index 0000000..705e9e1
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSummationCalculate.c
@@ -0,0 +1 @@
+../lmrcImageSummationCalculate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSymmetryFind.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSymmetryFind.c
new file mode 120000 (symlink)
index 0000000..9a40f50
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageSymmetryFind.c
@@ -0,0 +1 @@
+../lmrcImageSymmetryFind.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTfunction.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTfunction.c
new file mode 120000 (symlink)
index 0000000..edd3343
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTfunction.c
@@ -0,0 +1 @@
+../lmrcImageTfunction.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTrans.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTrans.c
new file mode 120000 (symlink)
index 0000000..db6ada3
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTrans.c
@@ -0,0 +1 @@
+../lmrcImageTrans.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTransformDescartesIntoPolar.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTransformDescartesIntoPolar.c
new file mode 120000 (symlink)
index 0000000..1a9128c
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTransformDescartesIntoPolar.c
@@ -0,0 +1 @@
+../lmrcImageTransformDescartesIntoPolar.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTriming.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTriming.c
new file mode 120000 (symlink)
index 0000000..1e240d6
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageTriming.c
@@ -0,0 +1 @@
+../lmrcImageTriming.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageVolumeCalc.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageVolumeCalc.c
new file mode 120000 (symlink)
index 0000000..f4cc159
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageVolumeCalc.c
@@ -0,0 +1 @@
+../lmrcImageVolumeCalc.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageWindowing.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageWindowing.c
new file mode 120000 (symlink)
index 0000000..a260d1c
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImageWindowing.c
@@ -0,0 +1 @@
+../lmrcImageWindowing.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesFTest.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesFTest.c
new file mode 120000 (symlink)
index 0000000..29227c0
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesFTest.c
@@ -0,0 +1 @@
+../lmrcImagesFTest.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesStatDataGet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesStatDataGet.c
new file mode 120000 (symlink)
index 0000000..be47159
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesStatDataGet.c
@@ -0,0 +1 @@
+../lmrcImagesStatDataGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesTTest.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesTTest.c
new file mode 120000 (symlink)
index 0000000..813df54
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesTTest.c
@@ -0,0 +1 @@
+../lmrcImagesTTest.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesVarianceAnalysis.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesVarianceAnalysis.c
new file mode 120000 (symlink)
index 0000000..010a4c7
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesVarianceAnalysis.c
@@ -0,0 +1 @@
+../lmrcImagesVarianceAnalysis.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesVarianceMap.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesVarianceMap.c
new file mode 120000 (symlink)
index 0000000..14b9998
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcImagesVarianceMap.c
@@ -0,0 +1 @@
+../lmrcImagesVarianceMap.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFET.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFET.c
new file mode 120000 (symlink)
index 0000000..16359e9
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFET.c
@@ -0,0 +1 @@
+../lmrcSinogramFET.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETPCA.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETPCA.c
new file mode 120000 (symlink)
index 0000000..1fc27d5
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETPCA.c
@@ -0,0 +1 @@
+../lmrcSinogramFETPCA.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETcalcWeight.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETcalcWeight.c
new file mode 120000 (symlink)
index 0000000..fdd20a2
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETcalcWeight.c
@@ -0,0 +1 @@
+../lmrcSinogramFETcalcWeight.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETcorrelationMap.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETcorrelationMap.c
new file mode 120000 (symlink)
index 0000000..0cd5827
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETcorrelationMap.c
@@ -0,0 +1 @@
+../lmrcSinogramFETcorrelationMap.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETnormalizedMap.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETnormalizedMap.c
new file mode 120000 (symlink)
index 0000000..59f82d7
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETnormalizedMap.c
@@ -0,0 +1 @@
+../lmrcSinogramFETnormalizedMap.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETreferredCorrelation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETreferredCorrelation.c
new file mode 120000 (symlink)
index 0000000..a962b25
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETreferredCorrelation.c
@@ -0,0 +1 @@
+../lmrcSinogramFETreferredCorrelation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETsmoothParameterMatching.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETsmoothParameterMatching.c
new file mode 120000 (symlink)
index 0000000..bc0205d
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/lmrcSinogramFETsmoothParameterMatching.c
@@ -0,0 +1 @@
+../lmrcSinogramFETsmoothParameterMatching.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageCheckFFT.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageCheckFFT.c
new file mode 120000 (symlink)
index 0000000..f1f8d5d
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageCheckFFT.c
@@ -0,0 +1 @@
+../mrcImageCheckFFT.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageCheckSameSize.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageCheckSameSize.c
new file mode 120000 (symlink)
index 0000000..a3c1378
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageCheckSameSize.c
@@ -0,0 +1 @@
+../mrcImageCheckSameSize.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageCopy.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageCopy.c
new file mode 120000 (symlink)
index 0000000..ddab35c
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageCopy.c
@@ -0,0 +1 @@
+../mrcImageCopy.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageDataSet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageDataSet.c
new file mode 120000 (symlink)
index 0000000..64ad162
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageDataSet.c
@@ -0,0 +1 @@
+../mrcImageDataSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageError.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageError.c
new file mode 120000 (symlink)
index 0000000..05ef9c2
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageError.c
@@ -0,0 +1 @@
+../mrcImageError.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageGet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageGet.c
new file mode 120000 (symlink)
index 0000000..db051b2
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageGet.c
@@ -0,0 +1 @@
+../mrcImageGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageGet.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageGet.sharedo
index 1ae6ee9..99b0679 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageGet.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageGet.sharedo differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageInfo.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageInfo.c
new file mode 120000 (symlink)
index 0000000..143baec
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageInfo.c
@@ -0,0 +1 @@
+../mrcImageInfo.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageInit.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageInit.c
new file mode 120000 (symlink)
index 0000000..71779db
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageInit.c
@@ -0,0 +1 @@
+../mrcImageInit.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageInit.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageInit.sharedo
index fab9b94..69adef6 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageInit.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageInit.sharedo differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageOperation.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageOperation.c
new file mode 120000 (symlink)
index 0000000..2107c9c
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageOperation.c
@@ -0,0 +1 @@
+../mrcImageOperation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagePVM.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagePVM.c
new file mode 120000 (symlink)
index 0000000..e093033
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagePVM.c
@@ -0,0 +1 @@
+../mrcImagePVM.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagePrint.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagePrint.c
new file mode 120000 (symlink)
index 0000000..3a16616
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagePrint.c
@@ -0,0 +1 @@
+../mrcImagePrint.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagePrint.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagePrint.sharedo
index aea4070..f265f31 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagePrint.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagePrint.sharedo differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageRead.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageRead.c
new file mode 120000 (symlink)
index 0000000..16ec53f
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageRead.c
@@ -0,0 +1 @@
+../mrcImageRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageRead.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageRead.sharedo
index 5538873..8b76334 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageRead.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageRead.sharedo differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSectionGet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSectionGet.c
new file mode 120000 (symlink)
index 0000000..336f39e
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSectionGet.c
@@ -0,0 +1 @@
+../mrcImageSectionGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSectionSet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSectionSet.c
new file mode 120000 (symlink)
index 0000000..b143dbc
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSectionSet.c
@@ -0,0 +1 @@
+../mrcImageSectionSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSet.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSet.c
new file mode 120000 (symlink)
index 0000000..f47c8a8
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSet.c
@@ -0,0 +1 @@
+../mrcImageSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSet.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSet.sharedo
index 5172de5..d1f891f 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSet.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageSet.sharedo differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageTailer.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageTailer.c
new file mode 120000 (symlink)
index 0000000..59dbf87
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageTailer.c
@@ -0,0 +1 @@
+../mrcImageTailer.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageToIntImage.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageToIntImage.c
new file mode 120000 (symlink)
index 0000000..bf7ac7f
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageToIntImage.c
@@ -0,0 +1 @@
+../mrcImageToIntImage.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageUtil.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageUtil.c
new file mode 120000 (symlink)
index 0000000..a7a01f7
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageUtil.c
@@ -0,0 +1 @@
+../mrcImageUtil.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageUtil.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageUtil.sharedo
index 0c71e7c..2282353 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageUtil.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageUtil.sharedo differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageUtilityforVariance.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageUtilityforVariance.c
new file mode 120000 (symlink)
index 0000000..d2ffb43
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageUtilityforVariance.c
@@ -0,0 +1 @@
+../mrcImageUtilityforVariance.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageWrite.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageWrite.c
new file mode 120000 (symlink)
index 0000000..f45e95d
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageWrite.c
@@ -0,0 +1 @@
+../mrcImageWrite.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageWrite.sharedo b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageWrite.sharedo
index 40180ef..bc27352 100644 (file)
Binary files a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageWrite.sharedo and b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageWrite.sharedo differ

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageWrite2.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageWrite2.c
new file mode 120000 (symlink)
index 0000000..1fc18db
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImageWrite2.c
@@ -0,0 +1 @@
+../mrcImageWrite2.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagefuncmin.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagefuncmin.c
new file mode 120000 (symlink)
index 0000000..b1fdb42
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcImagefuncmin.c
@@ -0,0 +1 @@
+../mrcImagefuncmin.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcRefUtil.c b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcRefUtil.c
new file mode 120000 (symlink)
index 0000000..904ec9d
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86LINUX64ICC/mrcRefUtil.c
@@ -0,0 +1 @@
+../mrcRefUtil.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/libpdbFile.a b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/libpdbFile.a
index 052003d..9f98e8e 100644 (file)
Binary files a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/libpdbFile.a and b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/libpdbFile.a differ

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdb2mrc2d.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdb2mrc2d.c
new file mode 120000 (symlink)
index 0000000..1eb5135
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdb2mrc2d.c
@@ -0,0 +1 @@
+../lpdb2mrc2d.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdb2mrc3d.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdb2mrc3d.c
new file mode 120000 (symlink)
index 0000000..dfcfe07
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdb2mrc3d.c
@@ -0,0 +1 @@
+../lpdb2mrc3d.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbCoord.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbCoord.c
new file mode 120000 (symlink)
index 0000000..9d1e92c
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbCoord.c
@@ -0,0 +1 @@
+../lpdbCoord.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbCoordInfo.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbCoordInfo.c
new file mode 120000 (symlink)
index 0000000..c34dda2
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbCoordInfo.c
@@ -0,0 +1 @@
+../lpdbCoordInfo.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbSelectedAtom.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbSelectedAtom.c
new file mode 120000 (symlink)
index 0000000..e5232ae
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbSelectedAtom.c
@@ -0,0 +1 @@
+../lpdbSelectedAtom.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbSurface.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbSurface.c
new file mode 120000 (symlink)
index 0000000..e4cb0af
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/lpdbSurface.c
@@ -0,0 +1 @@
+../lpdbSurface.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbFileRead.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbFileRead.c
new file mode 120000 (symlink)
index 0000000..58b2bf5
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbFileRead.c
@@ -0,0 +1 @@
+../pdbFileRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbFileWrite.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbFileWrite.c
new file mode 120000 (symlink)
index 0000000..f865740
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbFileWrite.c
@@ -0,0 +1 @@
+../pdbFileWrite.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbGet.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbGet.c
new file mode 120000 (symlink)
index 0000000..acd18e0
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbGet.c
@@ -0,0 +1 @@
+../pdbGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbInfoGet.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbInfoGet.c
new file mode 120000 (symlink)
index 0000000..f36d869
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbInfoGet.c
@@ -0,0 +1 @@
+../pdbInfoGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbRotation.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbRotation.c
new file mode 120000 (symlink)
index 0000000..7c60d34
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbRotation.c
@@ -0,0 +1 @@
+../pdbRotation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbSecondaryStructure.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbSecondaryStructure.c
new file mode 120000 (symlink)
index 0000000..1e23dfd
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbSecondaryStructure.c
@@ -0,0 +1 @@
+../pdbSecondaryStructure.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbSet.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbSet.c
new file mode 120000 (symlink)
index 0000000..3a14612
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbSet.c
@@ -0,0 +1 @@
+../pdbSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbTrans.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbTrans.c
new file mode 120000 (symlink)
index 0000000..d6227d5
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbTrans.c
@@ -0,0 +1 @@
+../pdbTrans.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbUtil.c b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbUtil.c
new file mode 120000 (symlink)
index 0000000..7320216
--- /dev/null
+++ b/src/Objects/DataManip/pdbFile/src/X86LINUX64ICC/pdbUtil.c
@@ -0,0 +1 @@
+../pdbUtil.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/simulation/src/X86LINUX64ICC/lFRET.c b/src/Objects/DataManip/simulation/src/X86LINUX64ICC/lFRET.c
new file mode 120000 (symlink)
index 0000000..36f615e
--- /dev/null
+++ b/src/Objects/DataManip/simulation/src/X86LINUX64ICC/lFRET.c
@@ -0,0 +1 @@
+../lFRET.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/simulation/src/X86LINUX64ICC/libsimulation.a b/src/Objects/DataManip/simulation/src/X86LINUX64ICC/libsimulation.a
index daca335..1f406ff 100644 (file)
Binary files a/src/Objects/DataManip/simulation/src/X86LINUX64ICC/libsimulation.a and b/src/Objects/DataManip/simulation/src/X86LINUX64ICC/libsimulation.a differ

diff --git a/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/libtgaFile.a b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/libtgaFile.a
index 1b4b671..604fd00 100644 (file)
Binary files a/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/libtgaFile.a and b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/libtgaFile.a differ

diff --git a/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/tgaFileInit.c b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/tgaFileInit.c
new file mode 120000 (symlink)
index 0000000..994df61
--- /dev/null
+++ b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/tgaFileInit.c
@@ -0,0 +1 @@
+../tgaFileInit.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/tgaFilePrint.c b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/tgaFilePrint.c
new file mode 120000 (symlink)
index 0000000..779db07
--- /dev/null
+++ b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/tgaFilePrint.c
@@ -0,0 +1 @@
+../tgaFilePrint.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/tgaFileRead.c b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/tgaFileRead.c
new file mode 120000 (symlink)
index 0000000..8cb3518
--- /dev/null
+++ b/src/Objects/DataManip/tgaFile/src/X86LINUX64ICC/tgaFileRead.c
@@ -0,0 +1 @@
+../tgaFileRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lAllCommonLineCalculation.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lAllCommonLineCalculation.c
new file mode 120000 (symlink)
index 0000000..f313258
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lAllCommonLineCalculation.c
@@ -0,0 +1 @@
+../lAllCommonLineCalculation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lAngularWeightCalculation.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lAngularWeightCalculation.c
new file mode 120000 (symlink)
index 0000000..c02044b
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lAngularWeightCalculation.c
@@ -0,0 +1 @@
+../lAngularWeightCalculation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lCommonLineCalculation.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lCommonLineCalculation.c
new file mode 120000 (symlink)
index 0000000..df5eaab
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lCommonLineCalculation.c
@@ -0,0 +1 @@
+../lCommonLineCalculation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lCommonLineDataSetInPlaneRotation.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lCommonLineDataSetInPlaneRotation.c
new file mode 120000 (symlink)
index 0000000..b0deee1
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lCommonLineDataSetInPlaneRotation.c
@@ -0,0 +1 @@
+../lCommonLineDataSetInPlaneRotation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lCommonLinesDataSet.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lCommonLinesDataSet.c
new file mode 120000 (symlink)
index 0000000..dd48e73
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lCommonLinesDataSet.c
@@ -0,0 +1 @@
+../lCommonLinesDataSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lDescartesIntoPolar.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lDescartesIntoPolar.c
new file mode 120000 (symlink)
index 0000000..ff51dfe
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lDescartesIntoPolar.c
@@ -0,0 +1 @@
+../lDescartesIntoPolar.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lEvaluateCorrelationMapwithCommonLine.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lEvaluateCorrelationMapwithCommonLine.c
new file mode 120000 (symlink)
index 0000000..e90c965
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lEvaluateCorrelationMapwithCommonLine.c
@@ -0,0 +1 @@
+../lEvaluateCorrelationMapwithCommonLine.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByAnnealing.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByAnnealing.c
new file mode 120000 (symlink)
index 0000000..385f8c6
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByAnnealing.c
@@ -0,0 +1 @@
+../lFETOrientationSearchByAnnealing.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignment.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignment.c
new file mode 120000 (symlink)
index 0000000..87db647
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignment.c
@@ -0,0 +1 @@
+../lFETOrientationSearchByFeatureAlignment.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignmentInitSet.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignmentInitSet.c
new file mode 120000 (symlink)
index 0000000..3a22892
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignmentInitSet.c
@@ -0,0 +1 @@
+../lFETOrientationSearchByFeatureAlignmentInitSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignmentSphere.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignmentSphere.c
new file mode 120000 (symlink)
index 0000000..159ba1c
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETOrientationSearchByFeatureAlignmentSphere.c
@@ -0,0 +1 @@
+../lFETOrientationSearchByFeatureAlignmentSphere.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETmapOrientationSearchBySimultaneousFitting.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETmapOrientationSearchBySimultaneousFitting.c
new file mode 120000 (symlink)
index 0000000..400ca4e
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETmapOrientationSearchBySimultaneousFitting.c
@@ -0,0 +1 @@
+../lFETmapOrientationSearchBySimultaneousFitting.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETsmallMapSetCreate_forSimultaneousMinimization.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETsmallMapSetCreate_forSimultaneousMinimization.c
new file mode 120000 (symlink)
index 0000000..01d22e6
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lFETsmallMapSetCreate_forSimultaneousMinimization.c
@@ -0,0 +1 @@
+../lFETsmallMapSetCreate_forSimultaneousMinimization.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lInitialDataFileRead.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lInitialDataFileRead.c
new file mode 120000 (symlink)
index 0000000..2e46d0b
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lInitialDataFileRead.c
@@ -0,0 +1 @@
+../lInitialDataFileRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lJcalulation.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lJcalulation.c
new file mode 120000 (symlink)
index 0000000..d2404da
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lJcalulation.c
@@ -0,0 +1 @@
+../lJcalulation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lLcalculation.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lLcalculation.c
new file mode 120000 (symlink)
index 0000000..3463513
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lLcalculation.c
@@ -0,0 +1 @@
+../lLcalculation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lPlaneRotationAngleSet.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lPlaneRotationAngleSet.c
new file mode 120000 (symlink)
index 0000000..051d0b5
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lPlaneRotationAngleSet.c
@@ -0,0 +1 @@
+../lPlaneRotationAngleSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.a b/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.a
index d9e593d..dc92c48 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.a and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.a differ

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.debug.a b/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.debug.a
index e40729e..be50c16 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.debug.a and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.debug.a differ

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.so b/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.so
index 98baa50..8e4e8ea 100755 (executable)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.so and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/libtransform.so differ

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDataSeparationInfoPrint.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDataSeparationInfoPrint.c
new file mode 120000 (symlink)
index 0000000..7ead062
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDataSeparationInfoPrint.c
@@ -0,0 +1 @@
+../lllDataSeparationInfoPrint.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDataSeparationInfoRead.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDataSeparationInfoRead.c
new file mode 120000 (symlink)
index 0000000..28ef08b
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDataSeparationInfoRead.c
@@ -0,0 +1 @@
+../lllDataSeparationInfoRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDataSeparationInfoSet.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDataSeparationInfoSet.c
new file mode 120000 (symlink)
index 0000000..6c61ea5
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDataSeparationInfoSet.c
@@ -0,0 +1 @@
+../lllDataSeparationInfoSet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDatarMaxLimitForSeparation.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDatarMaxLimitForSeparation.c
new file mode 120000 (symlink)
index 0000000..1c3c35b
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllDatarMaxLimitForSeparation.c
@@ -0,0 +1 @@
+../lllDatarMaxLimitForSeparation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtract.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtract.c
new file mode 120000 (symlink)
index 0000000..7f9658a
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtract.c
@@ -0,0 +1 @@
+../lllExtract.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtractCtfinfFileCreate.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtractCtfinfFileCreate.c
new file mode 120000 (symlink)
index 0000000..d585b32
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtractCtfinfFileCreate.c
@@ -0,0 +1 @@
+../lllExtractCtfinfFileCreate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtractWithSeparation.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtractWithSeparation.c
new file mode 120000 (symlink)
index 0000000..d9abac9
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtractWithSeparation.c
@@ -0,0 +1 @@
+../lllExtractWithSeparation.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtractdYEstimate.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtractdYEstimate.c
new file mode 120000 (symlink)
index 0000000..3265530
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lllExtractdYEstimate.c
@@ -0,0 +1 @@
+../lllExtractdYEstimate.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3D.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3D.c
new file mode 120000 (symlink)
index 0000000..4eb73bd
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3D.c
@@ -0,0 +1 @@
+../lmrc2Dto3D.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3D.sharedo b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3D.sharedo
index 7cca7e9..b8f94a4 100644 (file)
Binary files a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3D.sharedo and b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3D.sharedo differ

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3DSIRT.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3DSIRT.c
new file mode 120000 (symlink)
index 0000000..244bdfe
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc2Dto3DSIRT.c
@@ -0,0 +1 @@
+../lmrc2Dto3DSIRT.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc3Dto2D.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc3Dto2D.c
new file mode 120000 (symlink)
index 0000000..cd3bbd3
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrc3Dto2D.c
@@ -0,0 +1 @@
+../lmrc3Dto2D.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageFileListAndEulerAngleDataRead.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageFileListAndEulerAngleDataRead.c
new file mode 120000 (symlink)
index 0000000..672f592
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageFileListAndEulerAngleDataRead.c
@@ -0,0 +1 @@
+../lmrcImageFileListAndEulerAngleDataRead.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageOneLineGet.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageOneLineGet.c
new file mode 120000 (symlink)
index 0000000..abbcbd6
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageOneLineGet.c
@@ -0,0 +1 @@
+../lmrcImageOneLineGet.c
\ No newline at end of file

diff --git a/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageSinogramCorrelationAdditionalWeight.c b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageSinogramCorrelationAdditionalWeight.c
new file mode 120000 (symlink)
index 0000000..329253c
--- /dev/null
+++ b/src/Objects/DataManip/transform/src/X86LINUX64ICC/lmrcImageSinogramCorrelationAdditionalWeight.c
@@ -0,0 +1 @@
+../lmrcImageSinogramCorrelationAdditionalWeight.c
\ No newline at end of file

diff --git a/src/Objects/General/AI/src/X86LINUX64ICC/libAI.a b/src/Objects/General/AI/src/X86LINUX64ICC/libAI.a
index 56d09ce..b32c389 100644 (file)
Binary files a/src/Objects/General/AI/src/X86LINUX64ICC/libAI.a and b/src/Objects/General/AI/src/X86LINUX64ICC/libAI.a differ

diff --git a/src/Objects/General/AI/src/X86LINUX64ICC/lmrcNeuralNet.c b/src/Objects/General/AI/src/X86LINUX64ICC/lmrcNeuralNet.c
new file mode 120000 (symlink)
index 0000000..9b61069
--- /dev/null
+++ b/src/Objects/General/AI/src/X86LINUX64ICC/lmrcNeuralNet.c
@@ -0,0 +1 @@
+../lmrcNeuralNet.c
\ No newline at end of file

diff --git a/src/Objects/General/AI/src/X86LINUX64ICC/neuralNet.c b/src/Objects/General/AI/src/X86LINUX64ICC/neuralNet.c
new file mode 120000 (symlink)
index 0000000..cd7b809
--- /dev/null
+++ b/src/Objects/General/AI/src/X86LINUX64ICC/neuralNet.c
@@ -0,0 +1 @@
+../neuralNet.c
\ No newline at end of file

diff --git a/src/Objects/General/Array/src/X86LINUX64ICC/arrayInfo.c b/src/Objects/General/Array/src/X86LINUX64ICC/arrayInfo.c
new file mode 120000 (symlink)
index 0000000..e3574c4
--- /dev/null
+++ b/src/Objects/General/Array/src/X86LINUX64ICC/arrayInfo.c
@@ -0,0 +1 @@
+../arrayInfo.c
\ No newline at end of file

diff --git a/src/Objects/General/Array/src/X86LINUX64ICC/arrayInit.c b/src/Objects/General/Array/src/X86LINUX64ICC/arrayInit.c
new file mode 120000 (symlink)
index 0000000..69bb23c
--- /dev/null
+++ b/src/Objects/General/Array/src/X86LINUX64ICC/arrayInit.c
@@ -0,0 +1 @@
+../arrayInit.c
\ No newline at end of file

diff --git a/src/Objects/General/Array/src/X86LINUX64ICC/arrayPCA.c b/src/Objects/General/Array/src/X86LINUX64ICC/arrayPCA.c
new file mode 120000 (symlink)
index 0000000..9e90228
--- /dev/null
+++ b/src/Objects/General/Array/src/X86LINUX64ICC/arrayPCA.c
@@ -0,0 +1 @@
+../arrayPCA.c
\ No newline at end of file

diff --git a/src/Objects/General/Array/src/X86LINUX64ICC/arrayRead.c b/src/Objects/General/Array/src/X86LINUX64ICC/arrayRead.c
new file mode 120000 (symlink)
index 0000000..c05b451
--- /dev/null
+++ b/src/Objects/General/Array/src/X86LINUX64ICC/arrayRead.c
@@ -0,0 +1 @@
+../arrayRead.c
\ No newline at end of file

diff --git a/src/Objects/General/Array/src/X86LINUX64ICC/arrayWrite.c b/src/Objects/General/Array/src/X86LINUX64ICC/arrayWrite.c
new file mode 120000 (symlink)
index 0000000..a618f4f
--- /dev/null
+++ b/src/Objects/General/Array/src/X86LINUX64ICC/arrayWrite.c
@@ -0,0 +1 @@
+../arrayWrite.c
\ No newline at end of file

diff --git a/src/Objects/General/Array/src/X86LINUX64ICC/larray2mrc.c b/src/Objects/General/Array/src/X86LINUX64ICC/larray2mrc.c
new file mode 120000 (symlink)
index 0000000..aadc64e
--- /dev/null
+++ b/src/Objects/General/Array/src/X86LINUX64ICC/larray2mrc.c
@@ -0,0 +1 @@
+../larray2mrc.c
\ No newline at end of file

diff --git a/src/Objects/General/Array/src/X86LINUX64ICC/libArray.a b/src/Objects/General/Array/src/X86LINUX64ICC/libArray.a
index bbc3759..8447400 100644 (file)
Binary files a/src/Objects/General/Array/src/X86LINUX64ICC/libArray.a and b/src/Objects/General/Array/src/X86LINUX64ICC/libArray.a differ

diff --git a/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogAnalysis.c b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogAnalysis.c
new file mode 120000 (symlink)
index 0000000..b034a02
--- /dev/null
+++ b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogAnalysis.c
@@ -0,0 +1 @@
+../clusterLogAnalysis.c
\ No newline at end of file

diff --git a/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogInit.c b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogInit.c
new file mode 120000 (symlink)
index 0000000..9c3bef7
--- /dev/null
+++ b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogInit.c
@@ -0,0 +1 @@
+../clusterLogInit.c
\ No newline at end of file

diff --git a/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogRead.c b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogRead.c
new file mode 120000 (symlink)
index 0000000..bf783db
--- /dev/null
+++ b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogRead.c
@@ -0,0 +1 @@
+../clusterLogRead.c
\ No newline at end of file

diff --git a/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogUtil.c b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogUtil.c
new file mode 120000 (symlink)
index 0000000..169fc99
--- /dev/null
+++ b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogUtil.c
@@ -0,0 +1 @@
+../clusterLogUtil.c
\ No newline at end of file

diff --git a/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogWrite.c b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogWrite.c
new file mode 120000 (symlink)
index 0000000..45b246d
--- /dev/null
+++ b/src/Objects/General/Cluster/src/X86LINUX64ICC/clusterLogWrite.c
@@ -0,0 +1 @@
+../clusterLogWrite.c
\ No newline at end of file

diff --git a/src/Objects/General/Cluster/src/X86LINUX64ICC/libCluster.a b/src/Objects/General/Cluster/src/X86LINUX64ICC/libCluster.a
index 531d3ca..9c78c4b 100644 (file)
Binary files a/src/Objects/General/Cluster/src/X86LINUX64ICC/libCluster.a and b/src/Objects/General/Cluster/src/X86LINUX64ICC/libCluster.a differ

diff --git a/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalHelix.c b/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalHelix.c
new file mode 120000 (symlink)
index 0000000..80f4cf6
--- /dev/null
+++ b/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalHelix.c
@@ -0,0 +1 @@
+../crystalHelix.c
\ No newline at end of file

diff --git a/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalInfoFile.c b/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalInfoFile.c
new file mode 120000 (symlink)
index 0000000..e7b97cc
--- /dev/null
+++ b/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalInfoFile.c
@@ -0,0 +1 @@
+../crystalInfoFile.c
\ No newline at end of file

diff --git a/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalInit.c b/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalInit.c
new file mode 120000 (symlink)
index 0000000..593ca53
--- /dev/null
+++ b/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalInit.c
@@ -0,0 +1 @@
+../crystalInit.c
\ No newline at end of file

diff --git a/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalUtil.c b/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalUtil.c
new file mode 120000 (symlink)
index 0000000..3bb961c
--- /dev/null
+++ b/src/Objects/General/Crystal/src/X86LINUX64ICC/crystalUtil.c
@@ -0,0 +1 @@
+../crystalUtil.c
\ No newline at end of file

diff --git a/src/Objects/General/Crystal/src/X86LINUX64ICC/libCrystal.a b/src/Objects/General/Crystal/src/X86LINUX64ICC/libCrystal.a
index 6c486a4..00f5a1e 100644 (file)
Binary files a/src/Objects/General/Crystal/src/X86LINUX64ICC/libCrystal.a and b/src/Objects/General/Crystal/src/X86LINUX64ICC/libCrystal.a differ

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBase.cc b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBase.cc
new file mode 120000 (symlink)
index 0000000..33879ea
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBase.cc
@@ -0,0 +1 @@
+../DataBase.cc
\ No newline at end of file

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBase.ccm b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBase.ccm
new file mode 120000 (symlink)
index 0000000..42a3a32
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBase.ccm
@@ -0,0 +1 @@
+../DataBase.ccm
\ No newline at end of file

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorba.cc b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorba.cc
new file mode 120000 (symlink)
index 0000000..2e48258
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorba.cc
@@ -0,0 +1 @@
+../DataBaseCorba.cc
\ No newline at end of file

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorba.ccm b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorba.ccm
new file mode 120000 (symlink)
index 0000000..1793429
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorba.ccm
@@ -0,0 +1 @@
+../DataBaseCorba.ccm
\ No newline at end of file

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorba.idl b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorba.idl
new file mode 120000 (symlink)
index 0000000..42cc482
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorba.idl
@@ -0,0 +1 @@
+../DataBaseCorba.idl
\ No newline at end of file

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorbaBank.ccm b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorbaBank.ccm
new file mode 120000 (symlink)
index 0000000..6a8078a
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorbaBank.ccm
@@ -0,0 +1 @@
+../DataBaseCorbaBank.ccm
\ No newline at end of file

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorbaImpl.ccm b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorbaImpl.ccm
new file mode 120000 (symlink)
index 0000000..60acb74
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorbaImpl.ccm
@@ -0,0 +1 @@
+../DataBaseCorbaImpl.ccm
\ No newline at end of file

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorbaManager.ccm b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorbaManager.ccm
new file mode 120000 (symlink)
index 0000000..d19ddfa
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseCorbaManager.ccm
@@ -0,0 +1 @@
+../DataBaseCorbaManager.ccm
\ No newline at end of file

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseJournal.cc b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseJournal.cc
new file mode 120000 (symlink)
index 0000000..b71572a
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseJournal.cc
@@ -0,0 +1 @@
+../DataBaseJournal.cc
\ No newline at end of file

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseMaker.cc b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseMaker.cc
new file mode 120000 (symlink)
index 0000000..d6daf1d
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseMaker.cc
@@ -0,0 +1 @@
+../DataBaseMaker.cc
\ No newline at end of file

diff --git a/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseNote.cc b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseNote.cc
new file mode 120000 (symlink)
index 0000000..24da7e4
--- /dev/null
+++ b/src/Objects/General/DataBase/src/X86LINUX64ICC/DataBaseNote.cc
@@ -0,0 +1 @@
+../DataBaseNote.cc
\ No newline at end of file

diff --git a/src/Objects/General/File/src/X86LINUX64ICC/fileInfo.c b/src/Objects/General/File/src/X86LINUX64ICC/fileInfo.c
new file mode 120000 (symlink)
index 0000000..0b9d271
--- /dev/null
+++ b/src/Objects/General/File/src/X86LINUX64ICC/fileInfo.c
@@ -0,0 +1 @@
+../fileInfo.c
\ No newline at end of file

diff --git a/src/Objects/General/File/src/X86LINUX64ICC/fileInit.c b/src/Objects/General/File/src/X86LINUX64ICC/fileInit.c
new file mode 120000 (symlink)
index 0000000..3e340a8
--- /dev/null
+++ b/src/Objects/General/File/src/X86LINUX64ICC/fileInit.c
@@ -0,0 +1 @@
+../fileInit.c
\ No newline at end of file

diff --git a/src/Objects/General/File/src/X86LINUX64ICC/fileOpen.c b/src/Objects/General/File/src/X86LINUX64ICC/fileOpen.c
new file mode 120000 (symlink)
index 0000000..7a5d9c9
--- /dev/null
+++ b/src/Objects/General/File/src/X86LINUX64ICC/fileOpen.c
@@ -0,0 +1 @@
+../fileOpen.c
\ No newline at end of file

diff --git a/src/Objects/General/File/src/X86LINUX64ICC/libFile.a b/src/Objects/General/File/src/X86LINUX64ICC/libFile.a
index fb677ca..962d50c 100644 (file)
Binary files a/src/Objects/General/File/src/X86LINUX64ICC/libFile.a and b/src/Objects/General/File/src/X86LINUX64ICC/libFile.a differ

diff --git a/src/Objects/General/Map2D/src/X86LINUX64ICC/libMap2D.a b/src/Objects/General/Map2D/src/X86LINUX64ICC/libMap2D.a
index 823aa17..7218f1b 100644 (file)
Binary files a/src/Objects/General/Map2D/src/X86LINUX64ICC/libMap2D.a and b/src/Objects/General/Map2D/src/X86LINUX64ICC/libMap2D.a differ

diff --git a/src/Objects/General/Map2D/src/X86LINUX64ICC/map2DCoordGet.c b/src/Objects/General/Map2D/src/X86LINUX64ICC/map2DCoordGet.c
new file mode 120000 (symlink)
index 0000000..4d7ac8e
--- /dev/null
+++ b/src/Objects/General/Map2D/src/X86LINUX64ICC/map2DCoordGet.c
@@ -0,0 +1 @@
+../map2DCoordGet.c
\ No newline at end of file

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/.Depend b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/.Depend
index cd809ba..0ca6548 100644 (file)
--- a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/.Depend
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/.Depend
@@ -4,6 +4,7 @@ X86LINUX64ICC/matrix3DEulerAngles.o:matrix3DEulerAngles.o
 X86LINUX64ICC/matrix3DFile.o:matrix3DFile.o
 X86LINUX64ICC/matrix3DInit.o:matrix3DInit.o
 X86LINUX64ICC/matrix3DMultiply.o:matrix3DMultiply.o
+X86LINUX64ICC/matrix3DMultiplyMatrix.o:matrix3DMultiplyMatrix.o
 X86LINUX64ICC/matrix3DMultiplyVector.o:matrix3DMultiplyVector.o
 X86LINUX64ICC/matrix3DRotation.o:matrix3DRotation.o
 X86LINUX64ICC/matrix3DTranslation.o:matrix3DTranslation.o
@@ -133,6 +134,17 @@ matrix3DMultiply.o: matrix3DMultiply.c ../inc/Matrix3D.h \
  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  /home/people/tacyas/Eos/include/Array.h
+matrix3DMultiplyMatrix.o: matrix3DMultiplyMatrix.c ../inc/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Vector.h /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /home/people/tacyas/Eos/include/Array.h
 matrix3DMultiplyVector.o: matrix3DMultiplyVector.c /usr/include/stdio.h \
  /usr/include/features.h /usr/include/sys/cdefs.h \
  /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/.Source b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/.Source
index 8d51602..a774154 100644 (file)
--- a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/.Source
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/.Source
@@ -5,6 +5,7 @@ matrix3DEulerAngles.c \
 matrix3DFile.c \
 matrix3DInit.c \
 matrix3DMultiply.c \
+matrix3DMultiplyMatrix.c \
 matrix3DMultiplyVector.c \
 matrix3DRotation.c \
 matrix3DTranslation.c \
@@ -17,6 +18,7 @@ matrix3DEulerAngles.o \
 matrix3DFile.o \
 matrix3DInit.o \
 matrix3DMultiply.o \
+matrix3DMultiplyMatrix.o \
 matrix3DMultiplyVector.o \
 matrix3DRotation.o \
 matrix3DTranslation.o \
@@ -29,6 +31,7 @@ matrix3DEulerAngles.sharedo \
 matrix3DFile.sharedo \
 matrix3DInit.sharedo \
 matrix3DMultiply.sharedo \
+matrix3DMultiplyMatrix.sharedo \
 matrix3DMultiplyVector.sharedo \
 matrix3DRotation.sharedo \
 matrix3DTranslation.sharedo \
@@ -41,6 +44,7 @@ X86LINUX64ICC/matrix3DEulerAngles.o \
 X86LINUX64ICC/matrix3DFile.o \
 X86LINUX64ICC/matrix3DInit.o \
 X86LINUX64ICC/matrix3DMultiply.o \
+X86LINUX64ICC/matrix3DMultiplyMatrix.o \
 X86LINUX64ICC/matrix3DMultiplyVector.o \
 X86LINUX64ICC/matrix3DRotation.o \
 X86LINUX64ICC/matrix3DTranslation.o \
@@ -53,6 +57,7 @@ X86LINUX64ICC/matrix3DEulerAngles.sharedo \
 X86LINUX64ICC/matrix3DFile.sharedo \
 X86LINUX64ICC/matrix3DInit.sharedo \
 X86LINUX64ICC/matrix3DMultiply.sharedo \
+X86LINUX64ICC/matrix3DMultiplyMatrix.sharedo \
 X86LINUX64ICC/matrix3DMultiplyVector.sharedo \
 X86LINUX64ICC/matrix3DRotation.sharedo \
 X86LINUX64ICC/matrix3DTranslation.sharedo \
@@ -65,6 +70,7 @@ matrix3DEulerAngles.debugo \
 matrix3DFile.debugo \
 matrix3DInit.debugo \
 matrix3DMultiply.debugo \
+matrix3DMultiplyMatrix.debugo \
 matrix3DMultiplyVector.debugo \
 matrix3DRotation.debugo \
 matrix3DTranslation.debugo \
@@ -77,6 +83,7 @@ X86LINUX64ICC/matrix3DEulerAngles.debugo \
 X86LINUX64ICC/matrix3DFile.debugo \
 X86LINUX64ICC/matrix3DInit.debugo \
 X86LINUX64ICC/matrix3DMultiply.debugo \
+X86LINUX64ICC/matrix3DMultiplyMatrix.debugo \
 X86LINUX64ICC/matrix3DMultiplyVector.debugo \
 X86LINUX64ICC/matrix3DRotation.debugo \
 X86LINUX64ICC/matrix3DTranslation.debugo \
@@ -89,6 +96,7 @@ matrix3DEulerAngles.cudagdb.o \
 matrix3DFile.cudagdb.o \
 matrix3DInit.cudagdb.o \
 matrix3DMultiply.cudagdb.o \
+matrix3DMultiplyMatrix.cudagdb.o \
 matrix3DMultiplyVector.cudagdb.o \
 matrix3DRotation.cudagdb.o \
 matrix3DTranslation.cudagdb.o \
@@ -101,6 +109,7 @@ X86LINUX64ICC/matrix3DEulerAngles.cudagdb.o \
 X86LINUX64ICC/matrix3DFile.cudagdb.o \
 X86LINUX64ICC/matrix3DInit.cudagdb.o \
 X86LINUX64ICC/matrix3DMultiply.cudagdb.o \
+X86LINUX64ICC/matrix3DMultiplyMatrix.cudagdb.o \
 X86LINUX64ICC/matrix3DMultiplyVector.cudagdb.o \
 X86LINUX64ICC/matrix3DRotation.cudagdb.o \
 X86LINUX64ICC/matrix3DTranslation.cudagdb.o \

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/libMatrix3D.so b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/libMatrix3D.so
index 325677f..176666c 100755 (executable)
Binary files a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/libMatrix3D.so and b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/libMatrix3D.so differ

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DEulerAngleGet.c b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DEulerAngleGet.c
new file mode 120000 (symlink)
index 0000000..2a74aef
--- /dev/null
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DEulerAngleGet.c
@@ -0,0 +1 @@
+../matrix3DEulerAngleGet.c
\ No newline at end of file

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DEulerAngleSet.c b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DEulerAngleSet.c
new file mode 120000 (symlink)
index 0000000..7877bb9
--- /dev/null
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DEulerAngleSet.c
@@ -0,0 +1 @@
+../matrix3DEulerAngleSet.c
\ No newline at end of file

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DEulerAngles.c b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DEulerAngles.c
new file mode 120000 (symlink)
index 0000000..70e0f54
--- /dev/null
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DEulerAngles.c
@@ -0,0 +1 @@
+../matrix3DEulerAngles.c
\ No newline at end of file

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DFile.c b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DFile.c
new file mode 120000 (symlink)
index 0000000..8bdc00f
--- /dev/null
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DFile.c
@@ -0,0 +1 @@
+../matrix3DFile.c
\ No newline at end of file

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DInit.c b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DInit.c
new file mode 120000 (symlink)
index 0000000..b7f1820
--- /dev/null
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DInit.c
@@ -0,0 +1 @@
+../matrix3DInit.c
\ No newline at end of file

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DMultiply.c b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DMultiply.c
new file mode 120000 (symlink)
index 0000000..fe6b4fc
--- /dev/null
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DMultiply.c
@@ -0,0 +1 @@
+../matrix3DMultiply.c
\ No newline at end of file

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DMultiplyVector.c b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DMultiplyVector.c
new file mode 120000 (symlink)
index 0000000..77e053b
--- /dev/null
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DMultiplyVector.c
@@ -0,0 +1 @@
+../matrix3DMultiplyVector.c
\ No newline at end of file

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DRotation.c b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DRotation.c
new file mode 120000 (symlink)
index 0000000..1f77769
--- /dev/null
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DRotation.c
@@ -0,0 +1 @@
+../matrix3DRotation.c
\ No newline at end of file

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DTranslation.c b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DTranslation.c
new file mode 120000 (symlink)
index 0000000..e60665c
--- /dev/null
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DTranslation.c
@@ -0,0 +1 @@
+../matrix3DTranslation.c
\ No newline at end of file

diff --git a/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DUtil.c b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DUtil.c
new file mode 120000 (symlink)
index 0000000..6cc34cd
--- /dev/null
+++ b/src/Objects/General/Matrix3D/src/X86LINUX64ICC/matrix3DUtil.c
@@ -0,0 +1 @@
+../matrix3DUtil.c
\ No newline at end of file

diff --git a/src/Objects/General/Memory/src/X86LINUX64ICC/libMemory.a b/src/Objects/General/Memory/src/X86LINUX64ICC/libMemory.a
index bf968e1..ea52400 100644 (file)
Binary files a/src/Objects/General/Memory/src/X86LINUX64ICC/libMemory.a and b/src/Objects/General/Memory/src/X86LINUX64ICC/libMemory.a differ

diff --git a/src/Objects/General/Memory/src/X86LINUX64ICC/memoryAllocate.c b/src/Objects/General/Memory/src/X86LINUX64ICC/memoryAllocate.c
new file mode 120000 (symlink)
index 0000000..dbb8e18
--- /dev/null
+++ b/src/Objects/General/Memory/src/X86LINUX64ICC/memoryAllocate.c
@@ -0,0 +1 @@
+../memoryAllocate.c
\ No newline at end of file

diff --git a/src/Objects/General/Memory/src/X86LINUX64ICC/memoryByteSwap.c b/src/Objects/General/Memory/src/X86LINUX64ICC/memoryByteSwap.c
new file mode 120000 (symlink)
index 0000000..6016dc1
--- /dev/null
+++ b/src/Objects/General/Memory/src/X86LINUX64ICC/memoryByteSwap.c
@@ -0,0 +1 @@
+../memoryByteSwap.c
\ No newline at end of file

diff --git a/src/Objects/General/Memory/src/X86LINUX64ICC/memoryClear.c b/src/Objects/General/Memory/src/X86LINUX64ICC/memoryClear.c
new file mode 120000 (symlink)
index 0000000..b36598a
--- /dev/null
+++ b/src/Objects/General/Memory/src/X86LINUX64ICC/memoryClear.c
@@ -0,0 +1 @@
+../memoryClear.c
\ No newline at end of file

diff --git a/src/Objects/General/Memory/src/X86LINUX64ICC/memoryCopy.c b/src/Objects/General/Memory/src/X86LINUX64ICC/memoryCopy.c
new file mode 120000 (symlink)
index 0000000..4acd38b
--- /dev/null
+++ b/src/Objects/General/Memory/src/X86LINUX64ICC/memoryCopy.c
@@ -0,0 +1 @@
+../memoryCopy.c
\ No newline at end of file

diff --git a/src/Objects/General/PVM/src/X86LINUX64ICC/pvmStart.c b/src/Objects/General/PVM/src/X86LINUX64ICC/pvmStart.c
new file mode 120000 (symlink)
index 0000000..1825b50
--- /dev/null
+++ b/src/Objects/General/PVM/src/X86LINUX64ICC/pvmStart.c
@@ -0,0 +1 @@
+../pvmStart.c
\ No newline at end of file

diff --git a/src/Objects/General/Random/src/X86LINUX64ICC/libRandom.a b/src/Objects/General/Random/src/X86LINUX64ICC/libRandom.a
index aa572e2..13b29c9 100644 (file)
Binary files a/src/Objects/General/Random/src/X86LINUX64ICC/libRandom.a and b/src/Objects/General/Random/src/X86LINUX64ICC/libRandom.a differ

diff --git a/src/Objects/General/Socket/src/X86LINUX64ICC/libSocket.a b/src/Objects/General/Socket/src/X86LINUX64ICC/libSocket.a
index 588e73d..ea82a1b 100644 (file)
Binary files a/src/Objects/General/Socket/src/X86LINUX64ICC/libSocket.a and b/src/Objects/General/Socket/src/X86LINUX64ICC/libSocket.a differ

diff --git a/src/Objects/General/Socket/src/X86LINUX64ICC/socketClient.c b/src/Objects/General/Socket/src/X86LINUX64ICC/socketClient.c
new file mode 120000 (symlink)
index 0000000..c18c6fd
--- /dev/null
+++ b/src/Objects/General/Socket/src/X86LINUX64ICC/socketClient.c
@@ -0,0 +1 @@
+../socketClient.c
\ No newline at end of file

diff --git a/src/Objects/General/Socket/src/X86LINUX64ICC/socketServer.c b/src/Objects/General/Socket/src/X86LINUX64ICC/socketServer.c
new file mode 120000 (symlink)
index 0000000..d8169b7
--- /dev/null
+++ b/src/Objects/General/Socket/src/X86LINUX64ICC/socketServer.c
@@ -0,0 +1 @@
+../socketServer.c
\ No newline at end of file

diff --git a/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/libSpecialNumber.a b/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/libSpecialNumber.a
index 1d5243c..e15e2ff 100644 (file)
Binary files a/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/libSpecialNumber.a and b/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/libSpecialNumber.a differ

diff --git a/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/pow2nn.c b/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/pow2nn.c
new file mode 120000 (symlink)
index 0000000..1096e26
--- /dev/null
+++ b/src/Objects/General/SpecialNumber/src/X86LINUX64ICC/pow2nn.c
@@ -0,0 +1 @@
+../pow2nn.c
\ No newline at end of file

diff --git a/src/Objects/General/String/src/X86LINUX64ICC/libString.a b/src/Objects/General/String/src/X86LINUX64ICC/libString.a
index 2843d4c..31b653f 100644 (file)
Binary files a/src/Objects/General/String/src/X86LINUX64ICC/libString.a and b/src/Objects/General/String/src/X86LINUX64ICC/libString.a differ

diff --git a/src/Objects/General/String/src/X86LINUX64ICC/stringGet.c b/src/Objects/General/String/src/X86LINUX64ICC/stringGet.c
new file mode 120000 (symlink)
index 0000000..3dbc383
--- /dev/null
+++ b/src/Objects/General/String/src/X86LINUX64ICC/stringGet.c
@@ -0,0 +1 @@
+../stringGet.c
\ No newline at end of file

diff --git a/src/Objects/General/String/src/X86LINUX64ICC/stringGetFromFile.c b/src/Objects/General/String/src/X86LINUX64ICC/stringGetFromFile.c
new file mode 120000 (symlink)
index 0000000..93be09d
--- /dev/null
+++ b/src/Objects/General/String/src/X86LINUX64ICC/stringGetFromFile.c
@@ -0,0 +1 @@
+../stringGetFromFile.c
\ No newline at end of file

diff --git a/src/Objects/General/String/src/X86LINUX64ICC/stringIsSame.c b/src/Objects/General/String/src/X86LINUX64ICC/stringIsSame.c
new file mode 120000 (symlink)
index 0000000..7cab7c4
--- /dev/null
+++ b/src/Objects/General/String/src/X86LINUX64ICC/stringIsSame.c
@@ -0,0 +1 @@
+../stringIsSame.c
\ No newline at end of file

diff --git a/src/Objects/General/String/src/X86LINUX64ICC/stringUtil.c b/src/Objects/General/String/src/X86LINUX64ICC/stringUtil.c
new file mode 120000 (symlink)
index 0000000..ca63a94
--- /dev/null
+++ b/src/Objects/General/String/src/X86LINUX64ICC/stringUtil.c
@@ -0,0 +1 @@
+../stringUtil.c
\ No newline at end of file

diff --git a/src/Objects/General/Vector/src/X86LINUX64ICC/Vector.c b/src/Objects/General/Vector/src/X86LINUX64ICC/Vector.c
new file mode 120000 (symlink)
index 0000000..65d355e
--- /dev/null
+++ b/src/Objects/General/Vector/src/X86LINUX64ICC/Vector.c
@@ -0,0 +1 @@
+../Vector.c
\ No newline at end of file

diff --git a/src/Objects/General/Vector/src/X86LINUX64ICC/VectorRead.c b/src/Objects/General/Vector/src/X86LINUX64ICC/VectorRead.c
new file mode 120000 (symlink)
index 0000000..4172230
--- /dev/null
+++ b/src/Objects/General/Vector/src/X86LINUX64ICC/VectorRead.c
@@ -0,0 +1 @@
+../VectorRead.c
\ No newline at end of file

diff --git a/src/Objects/General/Vector/src/X86LINUX64ICC/VectorScalarProduct.c b/src/Objects/General/Vector/src/X86LINUX64ICC/VectorScalarProduct.c
new file mode 120000 (symlink)
index 0000000..d979723
--- /dev/null
+++ b/src/Objects/General/Vector/src/X86LINUX64ICC/VectorScalarProduct.c
@@ -0,0 +1 @@
+../VectorScalarProduct.c
\ No newline at end of file

diff --git a/src/Objects/General/Vector/src/X86LINUX64ICC/lVectorSpline2D.c b/src/Objects/General/Vector/src/X86LINUX64ICC/lVectorSpline2D.c
new file mode 120000 (symlink)
index 0000000..14e3484
--- /dev/null
+++ b/src/Objects/General/Vector/src/X86LINUX64ICC/lVectorSpline2D.c
@@ -0,0 +1 @@
+../lVectorSpline2D.c
\ No newline at end of file

diff --git a/src/Objects/General/Vector/src/X86LINUX64ICC/libVector.a b/src/Objects/General/Vector/src/X86LINUX64ICC/libVector.a
index 8a669df..cbc09bd 100644 (file)
Binary files a/src/Objects/General/Vector/src/X86LINUX64ICC/libVector.a and b/src/Objects/General/Vector/src/X86LINUX64ICC/libVector.a differ

diff --git a/src/Objects/General/dummy/src/X86LINUX64ICC/ctype_b.c b/src/Objects/General/dummy/src/X86LINUX64ICC/ctype_b.c
new file mode 120000 (symlink)
index 0000000..04835e6
--- /dev/null
+++ b/src/Objects/General/dummy/src/X86LINUX64ICC/ctype_b.c
@@ -0,0 +1 @@
+../ctype_b.c
\ No newline at end of file

diff --git a/src/Objects/General/dummy/src/X86LINUX64ICC/libdummy.a b/src/Objects/General/dummy/src/X86LINUX64ICC/libdummy.a
index 85b9694..0780ce4 100644 (file)
Binary files a/src/Objects/General/dummy/src/X86LINUX64ICC/libdummy.a and b/src/Objects/General/dummy/src/X86LINUX64ICC/libdummy.a differ

diff --git a/src/Objects/General/eosCuda/src/X86LINUX64ICC/eosCuda.c b/src/Objects/General/eosCuda/src/X86LINUX64ICC/eosCuda.c
new file mode 120000 (symlink)
index 0000000..6ea5bb3
--- /dev/null
+++ b/src/Objects/General/eosCuda/src/X86LINUX64ICC/eosCuda.c
@@ -0,0 +1 @@
+../eosCuda.c
\ No newline at end of file

diff --git a/src/Objects/General/eosCuda/src/X86LINUX64ICC/libeosCuda.a b/src/Objects/General/eosCuda/src/X86LINUX64ICC/libeosCuda.a
index 78ee287..a34456f 100644 (file)
Binary files a/src/Objects/General/eosCuda/src/X86LINUX64ICC/libeosCuda.a and b/src/Objects/General/eosCuda/src/X86LINUX64ICC/libeosCuda.a differ

diff --git a/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThread.c b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThread.c
new file mode 120000 (symlink)
index 0000000..b159499
--- /dev/null
+++ b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThread.c
@@ -0,0 +1 @@
+../eosPThread.c
\ No newline at end of file

diff --git a/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadCreate.c b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadCreate.c
new file mode 120000 (symlink)
index 0000000..326565b
--- /dev/null
+++ b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadCreate.c
@@ -0,0 +1 @@
+../eosPThreadCreate.c
\ No newline at end of file

diff --git a/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadInit.c b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadInit.c
new file mode 120000 (symlink)
index 0000000..d88f3a0
--- /dev/null
+++ b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadInit.c
@@ -0,0 +1 @@
+../eosPThreadInit.c
\ No newline at end of file

diff --git a/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadJoin.c b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadJoin.c
new file mode 120000 (symlink)
index 0000000..520e7db
--- /dev/null
+++ b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadJoin.c
@@ -0,0 +1 @@
+../eosPThreadJoin.c
\ No newline at end of file

diff --git a/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadMutex.c b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadMutex.c
new file mode 120000 (symlink)
index 0000000..6414b0a
--- /dev/null
+++ b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadMutex.c
@@ -0,0 +1 @@
+../eosPThreadMutex.c
\ No newline at end of file

diff --git a/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadMutex.sharedo b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadMutex.sharedo
index 5d5d441..16bb375 100644 (file)
Binary files a/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadMutex.sharedo and b/src/Objects/General/eosPThread/src/X86LINUX64ICC/eosPThreadMutex.sharedo differ

diff --git a/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.a b/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.a
index 498e425..7d62aed 100644 (file)
Binary files a/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.a and b/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.a differ

diff --git a/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.debug.a b/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.debug.a
index 94a2a62..49c0a2b 100644 (file)
Binary files a/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.debug.a and b/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.debug.a differ

diff --git a/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.so b/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.so
index 15c480e..0da8ff9 100755 (executable)
Binary files a/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.so and b/src/Objects/General/eosPThread/src/X86LINUX64ICC/libeosPThread.so differ

diff --git a/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointRead.c b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointRead.c
new file mode 120000 (symlink)
index 0000000..a9f9cb1
--- /dev/null
+++ b/src/Objects/General/eosPoint/src/X86LINUX64ICC/eosPointRead.c
@@ -0,0 +1 @@
+../eosPointRead.c
\ No newline at end of file

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/.Depend b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/.Depend
index 209cc9f..3216c25 100644 (file)
--- a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/.Depend
+++ b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/.Depend
@@ -6,3 +6,274 @@ X86LINUX64ICC/hf2000Write.o:hf2000Write.o
 X86LINUX64ICC/lhf2000LenzCurrent.o:lhf2000LenzCurrent.o
 X86LINUX64ICC/lhf2000SpecimenPosition.o:lhf2000SpecimenPosition.o
 X86LINUX64ICC/ltkhf2000.o:ltkhf2000.o
+hf2000Close.o: hf2000Close.c ../inc/hf2000.h /usr/include/sys/types.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/time.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/endian.h /usr/include/bits/endian.h \
+ /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/sys/stat.h \
+ /usr/include/bits/stat.h /usr/include/fcntl.h /usr/include/bits/fcntl.h \
+ /usr/include/termios.h /usr/include/bits/termios.h \
+ /usr/include/sys/ttydefaults.h /usr/include/stdio.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/tk.h /usr/include/tcl.h /usr/include/tclDecls.h \
+ /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h
+hf2000Command.o: hf2000Command.c ../inc/hf2000.h /usr/include/sys/types.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/time.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/endian.h /usr/include/bits/endian.h \
+ /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/sys/stat.h \
+ /usr/include/bits/stat.h /usr/include/fcntl.h /usr/include/bits/fcntl.h \
+ /usr/include/termios.h /usr/include/bits/termios.h \
+ /usr/include/sys/ttydefaults.h /usr/include/stdio.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/tk.h /usr/include/tcl.h /usr/include/tclDecls.h \
+ /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h
+hf2000Init.o: hf2000Init.c ../inc/hf2000.h /usr/include/sys/types.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/time.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/endian.h /usr/include/bits/endian.h \
+ /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/sys/stat.h \
+ /usr/include/bits/stat.h /usr/include/fcntl.h /usr/include/bits/fcntl.h \
+ /usr/include/termios.h /usr/include/bits/termios.h \
+ /usr/include/sys/ttydefaults.h /usr/include/stdio.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/tk.h /usr/include/tcl.h /usr/include/tclDecls.h \
+ /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h /usr/include/stdlib.h \
+ /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
+ /usr/include/alloca.h /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /usr/include/string.h /usr/include/xlocale.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/Socket.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h \
+ /usr/include/sys/socket.h /usr/include/sys/uio.h /usr/include/bits/uio.h \
+ /usr/include/bits/socket.h /usr/include/bits/sockaddr.h \
+ /usr/include/asm/socket.h /usr/include/asm-generic/socket.h \
+ /usr/include/asm/sockios.h /usr/include/asm-generic/sockios.h \
+ /usr/include/netinet/in.h /usr/include/stdint.h \
+ /usr/include/bits/wchar.h /usr/include/bits/in.h /usr/include/netdb.h \
+ /usr/include/rpc/netdb.h /usr/include/bits/netdb.h
+hf2000Read.o: hf2000Read.c /usr/include/unistd.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/hf2000.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/sys/stat.h /usr/include/bits/stat.h /usr/include/fcntl.h \
+ /usr/include/bits/fcntl.h /usr/include/termios.h \
+ /usr/include/bits/termios.h /usr/include/sys/ttydefaults.h \
+ /usr/include/stdio.h /usr/include/libio.h /usr/include/_G_config.h \
+ /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/tk.h /usr/include/tcl.h /usr/include/tclDecls.h \
+ /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h
+hf2000Write.o: hf2000Write.c /home/people/tacyas/Eos/include/genUtil.h \
+ /usr/include/math.h /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/hf2000.h \
+ /usr/include/sys/types.h /usr/include/bits/types.h \
+ /usr/include/bits/typesizes.h /usr/include/time.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/endian.h /usr/include/bits/endian.h \
+ /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/sys/stat.h \
+ /usr/include/bits/stat.h /usr/include/fcntl.h /usr/include/bits/fcntl.h \
+ /usr/include/termios.h /usr/include/bits/termios.h \
+ /usr/include/sys/ttydefaults.h /usr/include/stdio.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/tk.h /usr/include/tcl.h /usr/include/tclDecls.h \
+ /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h /usr/include/string.h /usr/include/xlocale.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/alloca.h \
+ /usr/include/unistd.h /usr/include/bits/posix_opt.h \
+ /usr/include/bits/environments.h /usr/include/bits/confname.h \
+ /usr/include/getopt.h
+lhf2000LenzCurrent.o: lhf2000LenzCurrent.c ../inc/hf2000.h \
+ /usr/include/sys/types.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/time.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/endian.h /usr/include/bits/endian.h \
+ /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/sys/stat.h \
+ /usr/include/bits/stat.h /usr/include/fcntl.h /usr/include/bits/fcntl.h \
+ /usr/include/termios.h /usr/include/bits/termios.h \
+ /usr/include/sys/ttydefaults.h /usr/include/stdio.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/tk.h /usr/include/tcl.h /usr/include/tclDecls.h \
+ /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h lhf2000LenzCurrent.h ../inc/hf2000.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/stdlib.h \
+ /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
+ /usr/include/alloca.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h
+lhf2000SpecimenPosition.o: lhf2000SpecimenPosition.c ../inc/hf2000.h \
+ /usr/include/sys/types.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/time.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/endian.h /usr/include/bits/endian.h \
+ /usr/include/bits/byteswap.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/sys/stat.h \
+ /usr/include/bits/stat.h /usr/include/fcntl.h /usr/include/bits/fcntl.h \
+ /usr/include/termios.h /usr/include/bits/termios.h \
+ /usr/include/sys/ttydefaults.h /usr/include/stdio.h /usr/include/libio.h \
+ /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/tk.h /usr/include/tcl.h /usr/include/tclDecls.h \
+ /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h lhf2000SpecimenPosition.h ../inc/hf2000.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h /usr/include/string.h \
+ /usr/include/xlocale.h /usr/include/stdlib.h \
+ /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \
+ /usr/include/alloca.h /usr/include/unistd.h \
+ /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
+ /usr/include/bits/confname.h /usr/include/getopt.h
+ltkhf2000.o: ltkhf2000.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h ../inc/hf2000.h \
+ /usr/include/sys/stat.h /usr/include/bits/stat.h /usr/include/fcntl.h \
+ /usr/include/bits/fcntl.h /usr/include/termios.h \
+ /usr/include/bits/termios.h /usr/include/sys/ttydefaults.h \
+ /usr/include/tk.h /usr/include/tcl.h /usr/include/tclDecls.h \
+ /usr/include/tclPlatDecls.h /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h lhf2000SpecimenPosition.h ../inc/hf2000.h \
+ lhf2000LenzCurrent.h

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Close.c b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Close.c
new file mode 120000 (symlink)
index 0000000..98b3090
--- /dev/null
+++ b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Close.c
@@ -0,0 +1 @@
+../hf2000Close.c
\ No newline at end of file

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Close.sharedo b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Close.sharedo
new file mode 100644 (file)
index 0000000..917fd41
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Close.sharedo differ

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Command.c b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Command.c
new file mode 120000 (symlink)
index 0000000..14730a5
--- /dev/null
+++ b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Command.c
@@ -0,0 +1 @@
+../hf2000Command.c
\ No newline at end of file

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Command.sharedo b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Command.sharedo
new file mode 100644 (file)
index 0000000..498acd1
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Command.sharedo differ

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Init.c b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Init.c
new file mode 120000 (symlink)
index 0000000..99dab64
--- /dev/null
+++ b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Init.c
@@ -0,0 +1 @@
+../hf2000Init.c
\ No newline at end of file

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Init.sharedo b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Init.sharedo
new file mode 100644 (file)
index 0000000..73266e8
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Init.sharedo differ

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Read.c b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Read.c
new file mode 120000 (symlink)
index 0000000..1ebfbb1
--- /dev/null
+++ b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Read.c
@@ -0,0 +1 @@
+../hf2000Read.c
\ No newline at end of file

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Read.sharedo b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Read.sharedo
new file mode 100644 (file)
index 0000000..fe849e0
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Read.sharedo differ

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Write.c b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Write.c
new file mode 120000 (symlink)
index 0000000..50b2334
--- /dev/null
+++ b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Write.c
@@ -0,0 +1 @@
+../hf2000Write.c
\ No newline at end of file

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Write.sharedo b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Write.sharedo
new file mode 100644 (file)
index 0000000..65b47b5
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/hf2000Write.sharedo differ

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000LenzCurrent.c b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000LenzCurrent.c
new file mode 120000 (symlink)
index 0000000..5780b37
--- /dev/null
+++ b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000LenzCurrent.c
@@ -0,0 +1 @@
+../lhf2000LenzCurrent.c
\ No newline at end of file

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000LenzCurrent.sharedo b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000LenzCurrent.sharedo
new file mode 100644 (file)
index 0000000..2dd9099
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000LenzCurrent.sharedo differ

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000SpecimenPosition.c b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000SpecimenPosition.c
new file mode 120000 (symlink)
index 0000000..ba0226b
--- /dev/null
+++ b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000SpecimenPosition.c
@@ -0,0 +1 @@
+../lhf2000SpecimenPosition.c
\ No newline at end of file

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000SpecimenPosition.sharedo b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000SpecimenPosition.sharedo
new file mode 100644 (file)
index 0000000..4861927
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/lhf2000SpecimenPosition.sharedo differ

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.a b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.a
new file mode 100644 (file)
index 0000000..c135e60
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.a differ

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.debug.a b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.debug.a
new file mode 100644 (file)
index 0000000..8586ca7
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.debug.a differ

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.so b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.so
new file mode 100755 (executable)
index 0000000..e5aa9d0
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/libhf2000.so differ

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/ltkhf2000.c b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/ltkhf2000.c
new file mode 120000 (symlink)
index 0000000..3e7cf06
--- /dev/null
+++ b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/ltkhf2000.c
@@ -0,0 +1 @@
+../ltkhf2000.c
\ No newline at end of file

diff --git a/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/ltkhf2000.sharedo b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/ltkhf2000.sharedo
new file mode 100644 (file)
index 0000000..9d1b22c
Binary files /dev/null and b/src/Objects/MachineManip/hf2000/src/X86LINUX64ICC/ltkhf2000.sharedo differ

diff --git a/src/Tools/Cluster/clusterLog2ToLog/src/X86LINUX64ICC/Makefile b/src/Tools/Cluster/clusterLog2ToLog/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Cluster/clusterLog2ToLog/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Cluster/clusterLog2ToLog/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Cluster/clusterLogASCII2Binary/src/X86LINUX64ICC/Makefile b/src/Tools/Cluster/clusterLogASCII2Binary/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Cluster/clusterLogASCII2Binary/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Cluster/clusterLogASCII2Binary/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Cluster/clusterShow/src/X86LINUX64ICC/Makefile b/src/Tools/Cluster/clusterShow/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Cluster/clusterShow/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Cluster/clusterShow/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Coord/coordRotation/src/X86LINUX64ICC/Makefile b/src/Tools/Coord/coordRotation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Coord/coordRotation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Coord/coordRotation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Coord/pointsSetToPDB/src/X86LINUX64ICC/Makefile b/src/Tools/Coord/pointsSetToPDB/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Coord/pointsSetToPDB/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Coord/pointsSetToPDB/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64ICC/.Depend b/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64ICC/.Depend
index 4f035f6..51f689d 100644 (file)
--- a/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64ICC/.Depend
@@ -105,217 +105,3 @@ dcdAtomChangeDistanceFromAtom.o: dcdAtomChangeDistanceFromAtom.cc \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
-dcdAtomChangeDistanceFromAtom.o: dcdAtomChangeDistanceFromAtom.cc \
- /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdAtomChangeDistanceFromAtom.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h
-dcdAtomChangeDistanceFromAtom.o: dcdAtomChangeDistanceFromAtom.cc \
- /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdAtomChangeDistanceFromAtom.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64ICC/Makefile b/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/DCDFile/dcdAtomChangeDistanceFromAtom/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64ICC/.Depend b/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64ICC/.Depend
index aec3853..93762cc 100644 (file)
--- a/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64ICC/.Depend
@@ -105,217 +105,3 @@ dcdAtomDistanceDistribution.o: dcdAtomDistanceDistribution.cc \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
-dcdAtomDistanceDistribution.o: dcdAtomDistanceDistribution.cc \
- /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdAtomDistanceDistribution.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h
-dcdAtomDistanceDistribution.o: dcdAtomDistanceDistribution.cc \
- /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdAtomDistanceDistribution.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64ICC/Makefile b/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/DCDFile/dcdAtomDistanceDistribution/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/DCDFile/dcdCompareCA/src/X86LINUX64ICC/Makefile b/src/Tools/DCDFile/dcdCompareCA/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/DCDFile/dcdCompareCA/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/DCDFile/dcdCompareCA/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64ICC/.Depend b/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64ICC/.Depend
index f303bab..561affe 100644 (file)
--- a/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64ICC/.Depend
@@ -105,217 +105,3 @@ dcdDistanceAtomBetweenAtom.o: dcdDistanceAtomBetweenAtom.cc \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
-dcdDistanceAtomBetweenAtom.o: dcdDistanceAtomBetweenAtom.cc \
- /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdDistanceAtomBetweenAtom.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h
-dcdDistanceAtomBetweenAtom.o: dcdDistanceAtomBetweenAtom.cc \
- /usr/include/stdio.h /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdDistanceAtomBetweenAtom.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64ICC/Makefile b/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64ICC/.Depend b/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64ICC/.Depend
index 086f922..9a9d37a 100644 (file)
--- a/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64ICC/.Depend
@@ -105,217 +105,3 @@ dcdFilePrint.o: dcdFilePrint.cc /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
-dcdFilePrint.o: dcdFilePrint.cc /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdFilePrint.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h
-dcdFilePrint.o: dcdFilePrint.cc /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdFilePrint.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64ICC/Makefile b/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/DCDFile/dcdFilePrint/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/DCDFile/dcdInfo/src/X86LINUX64ICC/.Depend b/src/Tools/DCDFile/dcdInfo/src/X86LINUX64ICC/.Depend
index 95c313b..bf48368 100644 (file)
--- a/src/Tools/DCDFile/dcdInfo/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/DCDFile/dcdInfo/src/X86LINUX64ICC/.Depend
@@ -103,213 +103,3 @@ dcdInfo.o: dcdInfo.cc /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
-dcdInfo.o: dcdInfo.cc /usr/include/stdio.h /usr/include/features.h \
- /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
- /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/dcdInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h
-dcdInfo.o: dcdInfo.cc /usr/include/stdio.h /usr/include/features.h \
- /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
- /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/dcdInfo.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdInfo/src/X86LINUX64ICC/Makefile b/src/Tools/DCDFile/dcdInfo/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/DCDFile/dcdInfo/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/DCDFile/dcdInfo/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64ICC/.Depend b/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64ICC/.Depend
index 81cd74b..a05820d 100644 (file)
--- a/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64ICC/.Depend
@@ -105,217 +105,3 @@ dcdSelectAtoms.o: dcdSelectAtoms.cc /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
-dcdSelectAtoms.o: dcdSelectAtoms.cc /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdSelectAtoms.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h
-dcdSelectAtoms.o: dcdSelectAtoms.cc /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdSelectAtoms.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64ICC/Makefile b/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/DCDFile/dcdSelectAtoms/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64ICC/.Depend b/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64ICC/.Depend
index f4b40dd..d39d30d 100644 (file)
--- a/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64ICC/.Depend
@@ -105,217 +105,3 @@ dcdSerectAtom.o: dcdSerectAtom.cc /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
-dcdSerectAtom.o: dcdSerectAtom.cc /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdSerectAtom.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h
-dcdSerectAtom.o: dcdSerectAtom.cc /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdSerectAtom.h /home/people/tacyas/Eos/include/genUtil.h \
- /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64ICC/Makefile b/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/DCDFile/dcdSerectAtom/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64ICC/.Depend b/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64ICC/.Depend
index bfedf52..3ff4fca 100644 (file)
--- a/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64ICC/.Depend
@@ -105,217 +105,3 @@ dcdTimeSeriesBehavior.o: dcdTimeSeriesBehavior.cc /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/mrcImage.h \
  /home/people/tacyas/Eos/include/genUtil.h \
  /home/people/tacyas/Eos/include/ctfInfo.h
-dcdTimeSeriesBehavior.o: dcdTimeSeriesBehavior.cc /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdTimeSeriesBehavior.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h
-dcdTimeSeriesBehavior.o: dcdTimeSeriesBehavior.cc /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h ../inc/config.h \
- ../inc/../inc/dcdTimeSeriesBehavior.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/DCDFile.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
- /usr/include/bits/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
- /usr/include/locale.h /usr/include/bits/locale.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
- /usr/include/ctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/sched.h /usr/include/bits/sched.h \
- /usr/include/bits/setjmp.h /usr/include/unistd.h \
- /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
- /usr/include/bits/confname.h /usr/include/getopt.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
- /usr/include/wctype.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
- /home/people/tacyas/Eos/include/pdbFile.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Array.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h

diff --git a/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64ICC/Makefile b/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/DCDFile/dcdTimeSeriesBehavior/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Integration/Display2/src/X86LINUX64ICC/Makefile b/src/Tools/Integration/Display2/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Integration/Display2/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Integration/Display2/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Integration/Display3/src/X86LINUX64ICC/.Depend b/src/Tools/Integration/Display3/src/X86LINUX64ICC/.Depend
index 7f02590..f68570e 100644 (file)
--- a/src/Tools/Integration/Display3/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/Integration/Display3/src/X86LINUX64ICC/.Depend
@@ -1,3 +1 @@
 util.o: util.cc
-util.o: util.cc
-util.o: util.cc

diff --git a/src/Tools/Integration/Display3/src/X86LINUX64ICC/Makefile b/src/Tools/Integration/Display3/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Integration/Display3/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Integration/Display3/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Integration/Eos/src/X86LINUX64ICC/.Depend b/src/Tools/Integration/Eos/src/X86LINUX64ICC/.Depend
index ac8f61d..639e54b 100644 (file)
--- a/src/Tools/Integration/Eos/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/Integration/Eos/src/X86LINUX64ICC/.Depend
@@ -14,35 +14,3 @@ util.o: util.cc /usr/include/stdio.h /usr/include/features.h \
  /usr/include/bits/sigset.h /usr/include/bits/time.h \
  /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
  /usr/include/alloca.h ../inc/config.h ../inc/../inc/Eos.h
-util.o: util.cc /usr/include/stdio.h /usr/include/features.h \
- /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
- /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h ../inc/config.h ../inc/../inc/Eos.h
-util.o: util.cc /usr/include/stdio.h /usr/include/features.h \
- /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
- /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h ../inc/config.h ../inc/../inc/Eos.h

diff --git a/src/Tools/Integration/Eos/src/X86LINUX64ICC/Makefile b/src/Tools/Integration/Eos/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Integration/Eos/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Integration/Eos/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Integration/StereoDisplay/src/X86LINUX64ICC/Makefile b/src/Tools/Integration/StereoDisplay/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Integration/StereoDisplay/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Integration/StereoDisplay/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Integration/Visualmake/src/X86LINUX64ICC/Makefile b/src/Tools/Integration/Visualmake/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Integration/Visualmake/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Integration/Visualmake/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Integration/ctfDisplay/src/X86LINUX64ICC/Makefile b/src/Tools/Integration/ctfDisplay/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Integration/ctfDisplay/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Integration/ctfDisplay/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Integration/imagesClustering/src/X86LINUX64ICC/Makefile b/src/Tools/Integration/imagesClustering/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Integration/imagesClustering/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Integration/imagesClustering/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Integration/imagesView/src/X86LINUX64ICC/Makefile b/src/Tools/Integration/imagesView/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Integration/imagesView/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Integration/imagesView/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Integration/obj3Don2DImageView/src/X86LINUX64ICC/Makefile b/src/Tools/Integration/obj3Don2DImageView/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Integration/obj3Don2DImageView/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Integration/obj3Don2DImageView/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/Integration/smolet/src/X86LINUX64ICC/Makefile b/src/Tools/Integration/smolet/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/Integration/smolet/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/Integration/smolet/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/admin/mallocCheck/src/X86LINUX64ICC/Makefile b/src/Tools/admin/mallocCheck/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/admin/mallocCheck/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/admin/mallocCheck/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfDeterminationFromMultiImage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfDetermine/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfDetermine/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfDetermine/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfDetermine/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfEnvelopFunction/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfEnvelopFunction/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfEnvelopFunction/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfEnvelopFunction/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfFunction/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfFunction/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfFunction/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfFunction/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfFunctionServer/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfFunctionServer/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfFunctionServer/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfFunctionServer/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfInfoSet/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfInfoSet/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfInfoSet/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfInfoSet/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfMultiFunction/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfMultiFunction/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfMultiFunction/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfMultiFunction/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/ctfZeroPoint/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/ctfZeroPoint/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/ctfZeroPoint/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/ctfZeroPoint/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/electronWaveLength/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/electronWaveLength/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/electronWaveLength/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/electronWaveLength/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/molecularEnvelopeResampling/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ctfInfo/tiltInfoDetermine/src/X86LINUX64ICC/Makefile b/src/Tools/ctfInfo/tiltInfoDetermine/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ctfInfo/tiltInfoDetermine/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ctfInfo/tiltInfoDetermine/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/array2mrc/src/X86LINUX64ICC/Makefile b/src/Tools/filter/array2mrc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/array2mrc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/array2mrc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/bin2mrc/src/X86LINUX64ICC/Makefile b/src/Tools/filter/bin2mrc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/bin2mrc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/bin2mrc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/dos2unix/src/X86LINUX64ICC/Makefile b/src/Tools/filter/dos2unix/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/dos2unix/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/dos2unix/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/emData2mrc/src/X86LINUX64ICC/Makefile b/src/Tools/filter/emData2mrc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/emData2mrc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/emData2mrc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/imodst2mrc/src/X86LINUX64ICC/Makefile b/src/Tools/filter/imodst2mrc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/imodst2mrc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/imodst2mrc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/ip2mrc/src/X86LINUX64ICC/Makefile b/src/Tools/filter/ip2mrc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/ip2mrc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/ip2mrc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/moi2mrc/src/X86LINUX64ICC/Makefile b/src/Tools/filter/moi2mrc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/moi2mrc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/moi2mrc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/mrc2fld/src/X86LINUX64ICC/Makefile b/src/Tools/filter/mrc2fld/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/mrc2fld/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/mrc2fld/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/mrc2gif/src/X86LINUX64ICC/Makefile b/src/Tools/filter/mrc2gif/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/mrc2gif/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/mrc2gif/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/mrc2lattice/src/X86LINUX64ICC/Makefile b/src/Tools/filter/mrc2lattice/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/mrc2lattice/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/mrc2lattice/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/mrc2mrc/src/X86LINUX64ICC/.Depend b/src/Tools/filter/mrc2mrc/src/X86LINUX64ICC/.Depend
new file mode 100644 (file)
index 0000000..3d50762
--- /dev/null
+++ b/src/Tools/filter/mrc2mrc/src/X86LINUX64ICC/.Depend
@@ -0,0 +1,125 @@
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2mrc.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+init.o: init.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2mrc.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/String.h \
+ /home/people/tacyas/Eos/include/File.h \
+ /home/people/tacyas/Eos/include/Memory.h
+mrc2mrc.o: mrc2mrc.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h ../inc/config.h ../inc/../inc/mrc2mrc.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/mrcImage.h \
+ /home/people/tacyas/Eos/include/genUtil.h \
+ /home/people/tacyas/Eos/include/ctfInfo.h \
+ /home/people/tacyas/Eos/include/Vector.h \
+ /home/people/tacyas/Eos/include/Matrix3D.h \
+ /home/people/tacyas/Eos/include/Array.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrc2mrc.h
+util.o: util.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h ../inc/config.h \
+ ../inc/../inc/mrc2mrc.h

diff --git a/src/Tools/filter/mrc2mrc/src/X86LINUX64ICC/Makefile b/src/Tools/filter/mrc2mrc/src/X86LINUX64ICC/Makefile
new file mode 100755 (executable)
index 0000000..ec61247
--- /dev/null
+++ b/src/Tools/filter/mrc2mrc/src/X86LINUX64ICC/Makefile
@@ -0,0 +1,114 @@
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES   = \
+                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
+
+LIBFILESDEBUG   = \
+                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
+
+SRCC  = \
+                       $(OBJECTNAME).c \
+                       init.c \
+                       argCheck.c \
+                       usage.c  \
+                       util.c 
+
+SRCCXX  = \
+                       $(OBJECTNAME).cc \
+                       init.cc \
+                       argCheck.cc \
+                       usage.cc  \
+                       util.cc 
+
+MODULES    = \
+                       $(OBJECTNAME).o \
+                       init.o \
+                       argCheck.o \
+                       usage.o  \
+                       util.o 
+
+REALMODULES    = \
+                       $(OSTYPE)/$(OBJECTNAME).o \
+                       $(OSTYPE)/init.o \
+                       $(OSTYPE)/argCheck.o \
+                       $(OSTYPE)/usage.o \
+                       $(OSTYPE)/util.o 
+
+MODULESDEBUG    = \
+                       $(OBJECTNAME).debugo \
+                       init.debugo \
+                       argCheck.debugo \
+                       usage.debugo  \
+                       util.debugo 
+
+MODULESCUDAGDB    = \
+                       $(OBJECTNAME).cudagdb.o \
+                       init.cudagdb.o \
+                       argCheck.cudagdb.o \
+                       usage.cudagdb.o  \
+                       util.cudagdb.o 
+
+REALMODULESDEBUG    = \
+                       $(OSTYPE)/$(OBJECTNAME).debugo \
+                       $(OSTYPE)/init.debugo \
+                       $(OSTYPE)/argCheck.debugo \
+                       $(OSTYPE)/usage.debugo \
+                       $(OSTYPE)/util.debugo 
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+       fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+       echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+       $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include  $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc

diff --git a/src/Tools/filter/mrc2mrc/src/X86LINUX64ICC/X86LINUX64ICC b/src/Tools/filter/mrc2mrc/src/X86LINUX64ICC/X86LINUX64ICC
new file mode 120000 (symlink)
index 0000000..f1311d4
--- /dev/null
+++ b/src/Tools/filter/mrc2mrc/src/X86LINUX64ICC/X86LINUX64ICC
@@ -0,0 +1 @@
+../../../../../hostdepend/X86LINUX64ICC/src/Tools/filter/mrc2mrc/src/X86LINUX64ICC
\ No newline at end of file

diff --git a/src/Tools/filter/mrc2pov/src/X86LINUX64ICC/Makefile b/src/Tools/filter/mrc2pov/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/mrc2pov/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/mrc2pov/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/mrc2tiff/src/X86LINUX64ICC/Makefile b/src/Tools/filter/mrc2tiff/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/mrc2tiff/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/mrc2tiff/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/mrc2viff/src/X86LINUX64ICC/Makefile b/src/Tools/filter/mrc2viff/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/mrc2viff/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/mrc2viff/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/pdb2ucd/src/X86LINUX64ICC/Makefile b/src/Tools/filter/pdb2ucd/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/pdb2ucd/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/pdb2ucd/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/test/src/X86LINUX64ICC/Makefile b/src/Tools/filter/test/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/test/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/test/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/tgaInfo/src/X86LINUX64ICC/Makefile b/src/Tools/filter/tgaInfo/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/tgaInfo/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/tgaInfo/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/filter/tiff2mrc/src/X86LINUX64ICC/Makefile b/src/Tools/filter/tiff2mrc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/filter/tiff2mrc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/filter/tiff2mrc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/hf2000/hf2000Init/src/X86LINUX64ICC/.Depend b/src/Tools/hf2000/hf2000Init/src/X86LINUX64ICC/.Depend
index 3e68cdd..4738c42 100644 (file)
--- a/src/Tools/hf2000/hf2000Init/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/hf2000/hf2000Init/src/X86LINUX64ICC/.Depend
@@ -28,6 +28,53 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
+hf2000Init.o: hf2000Init.c /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/unistd.h /usr/include/bits/posix_opt.h \
+ /usr/include/bits/environments.h /usr/include/bits/confname.h \
+ /usr/include/getopt.h /usr/include/string.h /usr/include/xlocale.h \
+ /usr/include/math.h /usr/include/bits/huge_val.h \
+ /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
+ /usr/include/bits/inf.h /usr/include/bits/nan.h \
+ /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
+ ../inc/config.h ../inc/../inc/hf2000Init.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/Socket.h /usr/include/sys/socket.h \
+ /usr/include/sys/uio.h /usr/include/bits/uio.h \
+ /usr/include/bits/socket.h /usr/include/bits/sockaddr.h \
+ /usr/include/asm/socket.h /usr/include/asm-generic/socket.h \
+ /usr/include/asm/sockios.h /usr/include/asm-generic/sockios.h \
+ /usr/include/netinet/in.h /usr/include/stdint.h \
+ /usr/include/bits/wchar.h /usr/include/bits/in.h /usr/include/netdb.h \
+ /usr/include/rpc/netdb.h /usr/include/bits/netdb.h \
+ /home/people/tacyas/Eos/include/Memory.h \
+ /home/people/tacyas/Eos/include/hf2000.h /usr/include/sys/stat.h \
+ /usr/include/bits/stat.h /usr/include/fcntl.h /usr/include/bits/fcntl.h \
+ /usr/include/termios.h /usr/include/bits/termios.h \
+ /usr/include/sys/ttydefaults.h /usr/include/tk.h /usr/include/tcl.h \
+ /usr/include/tclDecls.h /usr/include/tclPlatDecls.h \
+ /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \

diff --git a/src/Tools/hf2000/hf2000Init/src/X86LINUX64ICC/Makefile b/src/Tools/hf2000/hf2000Init/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/hf2000/hf2000Init/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/hf2000/hf2000Init/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64ICC/.Depend b/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64ICC/.Depend
index 55e039f..ec24831 100644 (file)
--- a/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64ICC/.Depend
@@ -29,6 +29,44 @@ argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/features.h \
  /home/people/tacyas/Eos/include/String.h \
  /home/people/tacyas/Eos/include/File.h \
  /home/people/tacyas/Eos/include/Memory.h
+hf2000LenzCurrent.o: hf2000LenzCurrent.c /usr/include/stdio.h \
+ /usr/include/features.h /usr/include/sys/cdefs.h \
+ /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
+ /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/sys/types.h /usr/include/time.h /usr/include/sys/select.h \
+ /usr/include/bits/select.h /usr/include/bits/sigset.h \
+ /usr/include/bits/time.h /usr/include/sys/sysmacros.h \
+ /usr/include/bits/pthreadtypes.h /usr/include/alloca.h \
+ /usr/include/string.h /usr/include/xlocale.h /usr/include/math.h \
+ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
+ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
+ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
+ /usr/include/bits/mathcalls.h /usr/include/tcl.h /usr/include/tclDecls.h \
+ /usr/include/tclPlatDecls.h /usr/include/tk.h /usr/include/X11/Xlib.h \
+ /usr/include/X11/X.h /usr/include/X11/Xfuncproto.h \
+ /usr/include/X11/Xosdefs.h /usr/include/tkDecls.h ../inc/config.h \
+ ../inc/../inc/hf2000LenzCurrent.h \
+ /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
+ /usr/include/limits.h /usr/include/bits/posix1_lim.h \
+ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
+ /usr/include/bits/posix2_lim.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
+ /home/people/tacyas/Eos/include/hf2000.h /usr/include/sys/stat.h \
+ /usr/include/bits/stat.h /usr/include/fcntl.h /usr/include/bits/fcntl.h \
+ /usr/include/termios.h /usr/include/bits/termios.h \
+ /usr/include/sys/ttydefaults.h \
+ /home/people/tacyas/Eos/include/lhf2000LenzCurrent.h \
+ /home/people/tacyas/Eos/include/hf2000.h
 init.o: init.c /usr/include/stdio.h /usr/include/features.h \
  /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \

diff --git a/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64ICC/Makefile b/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/hf2000/hf2000LenzCurrent/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/hf2000/hf2000SpecimenPosition/src/X86LINUX64ICC/Makefile b/src/Tools/hf2000/hf2000SpecimenPosition/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/hf2000/hf2000SpecimenPosition/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/hf2000/hf2000SpecimenPosition/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/khorosTool/khorosFilterGenerate/src/X86LINUX64ICC/Makefile b/src/Tools/khorosTool/khorosFilterGenerate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/khorosTool/khorosFilterGenerate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/khorosTool/khorosFilterGenerate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/largeIP/largeIPInfo/src/X86LINUX64ICC/Makefile b/src/Tools/largeIP/largeIPInfo/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/largeIP/largeIPInfo/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/largeIP/largeIPInfo/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataAverage/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataAverage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataAverage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataAverage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataAxisSearch/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataAxisSearch/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataAxisSearch/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataAxisSearch/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataCTFCompensate/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataCTFCompensate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataCTFCompensate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataCTFCompensate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataCompare/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataCompare/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataCompare/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataCompare/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataContributionCalcDifferentN/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataContributionCalcDifferentN/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataContributionCalcDifferentN/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataContributionCalcDifferentN/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataDump/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataDump/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataDump/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataDump/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataEquatorAdd/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataEquatorAdd/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataEquatorAdd/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataEquatorAdd/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataExtract/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataExtract/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataExtract/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataExtract/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataFit/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataFit/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataFit/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataFit/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataFitServer/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataFitServer/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataFitServer/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataFitServer/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataInfo/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataInfo/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataInfo/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataInfo/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataLowPassFiltering/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataLowPassFiltering/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataLowPassFiltering/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataLowPassFiltering/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataMultiCTFCompensation/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataMultiCTFCompensation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataMultiCTFCompensation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataMultiCTFCompensation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataNEstimation/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataNEstimation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataNEstimation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataNEstimation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataNormalization/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataNormalization/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataNormalization/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataNormalization/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataPrint/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataPrint/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataPrint/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataPrint/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataRescaling/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataRescaling/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataRescaling/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataRescaling/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataResolutionCheck/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataResolutionCheck/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataResolutionCheck/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataResolutionCheck/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataRotation/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataRotation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataRotation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataRotation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataSelectionEstimation/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataSelectionEstimation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataSelectionEstimation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataSelectionEstimation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataSeparate/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataSeparate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataSeparate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataSeparate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDataWeightSet/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDataWeightSet/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDataWeightSet/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDataWeightSet/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/llData/llDatarMaxLimit/src/X86LINUX64ICC/Makefile b/src/Tools/llData/llDatarMaxLimit/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/llData/llDatarMaxLimit/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/llData/llDatarMaxLimit/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/ltlgData/ltlgDataInfo/src/X86LINUX64ICC/Makefile b/src/Tools/ltlgData/ltlgDataInfo/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/ltlgData/ltlgDataInfo/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/ltlgData/ltlgDataInfo/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86LINUX64ICC/Makefile b/src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/matrix3D/matrix3DEulerAngleTransform/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86LINUX64ICC/Makefile b/src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/matrix3D/matrix3DFromEulerAngle/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/matrix3D/matrix3DInverse/src/X86LINUX64ICC/Makefile b/src/Tools/matrix3D/matrix3DInverse/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/matrix3D/matrix3DInverse/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/matrix3D/matrix3DInverse/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/matrix3D/matrix3DToEulerAngle/src/X86LINUX64ICC/Makefile b/src/Tools/matrix3D/matrix3DToEulerAngle/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/matrix3D/matrix3DToEulerAngle/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/matrix3D/matrix3DToEulerAngle/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/fft2d/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/fft2d/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/fft2d/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/fft2d/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrc2dsn6/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrc2dsn6/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrc2dsn6/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrc2dsn6/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrc2map/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrc2map/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrc2map/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrc2map/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrc3DExtractZ/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrc3DExtractZ/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrc3DExtractZ/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrc3DExtractZ/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTDigitize/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTDigitize/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTDigitize/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTDigitize/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTExpression/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTExpression/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTExpression/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTExpression/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTFiltering/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTFiltering/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTFiltering/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTFiltering/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTInfo/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTInfo/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTInfo/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTInfo/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTProjection/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTProjection/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTProjection/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTProjection/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTResampling/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTResampling/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTResampling/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTResampling/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTShellInfo/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTShellInfo/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTShellInfo/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTShellInfo/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTSizeChange/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTSizeChange/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTSizeChange/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTSizeChange/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTSpectrum/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTSpectrum/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTSpectrum/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTSpectrum/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTXFiltering/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTXFiltering/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTXFiltering/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTXFiltering/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFFTplainreduce/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFFTplainreduce/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFFTplainreduce/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFFTplainreduce/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage2DProjection/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage2DProjection/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage2DProjection/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage2DProjection/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage2pdb/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage2pdb/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage2pdb/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage2pdb/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage3DPad/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage3DPad2/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage3DPad2/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage3DPad2/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage3DPad2/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImage3DWindowing/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImage3DWindowing/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImage3DWindowing/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImage3DWindowing/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAdd/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAdd/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAdd/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAdd/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAddValue/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAddValue/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAddValue/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAddValue/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAreaCalc/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAreaCalc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAreaCalc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAreaCalc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageAverage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageAverage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageAverage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageAverage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageBinalization/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageBinalization/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageBinalization/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageBinalization/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageBlockMerge/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageBlockMerge/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageBlockMerge/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageBlockMerge/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCTFObservation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCTFObservation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCTFObservation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCTFObservation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCTFSN/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCTFSN/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCTFSN/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCTFSN/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCVE/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCVE/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCVE/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCVE/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCenterGet/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCenterGet/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCenterGet/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCenterGet/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageClosing/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageClosing/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageClosing/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageClosing/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageColoring/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageColoring/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageColoring/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageColoring/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageConnection/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageConnection/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageConnection/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageConnection/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageConvolution/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageConvolution/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageConvolution/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageConvolution/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCorrelation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCorrelation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCorrelation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCorrelation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCorrelationWithCTFCompensation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCorrelationWithCTFCompensation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCorrelationWithCTFCompensation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCorrelationWithCTFCompensation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageCylinderSection/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageCylinderSection/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageCylinderSection/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageCylinderSection/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageDensityInfo/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDensityInfo/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageDensityInfo/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageDensityInfo/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageDilation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDilation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageDilation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageDilation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageDisplayDensityAsTempFactor/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDisplayDensityAsTempFactor/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageDisplayDensityAsTempFactor/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageDisplayDensityAsTempFactor/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageErosion/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageErosion/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageErosion/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageErosion/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageEstimateTiltImage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageEstimateTiltImage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageEstimateTiltImage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageEstimateTiltImage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageExpression/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageExpression/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageExpression/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageExpression/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFFT/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFOMCalc/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFOMCalc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFOMCalc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFOMCalc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFilamentSearch/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFilamentSearch/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFilamentSearch/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFilamentSearch/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFilterCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFilterCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFilterCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFilterCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageGaussDisc/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageGaussDisc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageGaussDisc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageGaussDisc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageGaussSphere/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageGaussSphere/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageGaussSphere/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageGaussSphere/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageHeaderChange/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageHeaderChange/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageHeaderChange/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageHeaderChange/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageHighlighting/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageHighlighting/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageHighlighting/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageHighlighting/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageInfo/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageInfo/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageInfo/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageInfo/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageLabeling/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageLabeling/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageLabeling/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageLabeling/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMakeDump/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMakeDump/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMakeDump/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMakeDump/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMakeSphere/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMakeSphere/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMakeSphere/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMakeSphere/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMasking/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMasking/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMasking/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMasking/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMergebyside/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMergebyside/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMergebyside/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMergebyside/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMirroring/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMirroring/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMirroring/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMirroring/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageModeChange/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageModeChange/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageModeChange/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageModeChange/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageModelCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageModelCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageModelCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageModelCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMontageCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMontageCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMontageCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMontageCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMove/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMove/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMove/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMove/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMultiplying/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMultiplying/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMultiplying/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMultiplying/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageNormalizing/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageNormalizing/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageNormalizing/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageNormalizing/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageOddBoxel/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageOddBoxel/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageOddBoxel/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageOddBoxel/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageOpening/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageOpening/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageOpening/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageOpening/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64ICC/.Depend b/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64ICC/.Depend
index 0de2700..9cf099c 100644 (file)
--- a/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64ICC/.Depend
@@ -34,75 +34,3 @@ mrcImagePCA.o: mrcImagePCA.cc /usr/include/stdio.h \
  /home/people/tacyas/Eos/include/Vector.h \
  /home/people/tacyas/Eos/include/Matrix3D.h \
  /home/people/tacyas/Eos/include/Array.h ../inc/mrcImagePCA.h
-mrcImagePCA.o: mrcImagePCA.cc /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/File.h \
- ../inc/config.h ../inc/../inc/mrcImagePCA.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/Memory.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Array.h ../inc/mrcImagePCA.h
-mrcImagePCA.o: mrcImagePCA.cc /usr/include/stdio.h \
- /usr/include/features.h /usr/include/sys/cdefs.h \
- /usr/include/bits/wordsize.h /usr/include/gnu/stubs.h \
- /usr/include/gnu/stubs-64.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
- /usr/include/bits/types.h /usr/include/bits/typesizes.h \
- /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
- /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
- /usr/include/stdlib.h /usr/include/bits/waitflags.h \
- /usr/include/bits/waitstatus.h /usr/include/endian.h \
- /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
- /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
- /usr/include/sys/select.h /usr/include/bits/select.h \
- /usr/include/bits/sigset.h /usr/include/bits/time.h \
- /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
- /usr/include/alloca.h /usr/include/string.h /usr/include/math.h \
- /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \
- /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \
- /usr/include/bits/nan.h /usr/include/bits/mathdef.h \
- /usr/include/bits/mathcalls.h /home/people/tacyas/Eos/include/File.h \
- ../inc/config.h ../inc/../inc/mrcImagePCA.h \
- /home/people/tacyas/Eos/include/genUtil.h /usr/include/values.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \
- /usr/include/limits.h /usr/include/bits/posix1_lim.h \
- /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
- /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
- /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h \
- /home/people/tacyas/Eos/include/Memory.h \
- /home/people/tacyas/Eos/include/mrcImage.h \
- /home/people/tacyas/Eos/include/genUtil.h \
- /home/people/tacyas/Eos/include/ctfInfo.h \
- /home/people/tacyas/Eos/include/Vector.h \
- /home/people/tacyas/Eos/include/Matrix3D.h \
- /home/people/tacyas/Eos/include/Array.h ../inc/mrcImagePCA.h

diff --git a/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImagePCA/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImagePad/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePad/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePad/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImagePad/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImagePeakSearch/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePeakSearch/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePeakSearch/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImagePeakSearch/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImagePixelDataGet/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImagePolyROI/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePolyROI/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePolyROI/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImagePolyROI/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImagePosterization/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePosterization/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePosterization/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImagePosterization/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImagePrint/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePrint/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePrint/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImagePrint/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImagePrint3D/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePrint3D/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePrint3D/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImagePrint3D/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageProjection/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageProjection/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageProjection/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageProjection/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImagePut3D/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImagePut3D/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImagePut3D/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImagePut3D/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageROI/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageROI/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageROI/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageROI/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageROI3D/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageROI3D/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageROI3D/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageROI3D/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageROIs/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageROIs/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageROIs/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageROIs/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRandomParticlesImageCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRandomParticlesImageCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRandomParticlesImageCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRandomParticlesImageCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRectangleGet/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRectangleGet/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRectangleGet/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRectangleGet/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRefConv2D/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRefConv2D/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRefConv2D/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRefConv2D/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRefCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRefCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRefCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRefCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageReverse/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageReverse/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageReverse/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageReverse/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRotation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRotation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRotation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRotation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageRotation3D/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageRotation3D/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageRotation3D/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageRotation3D/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSN/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSN/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSN/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSN/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageScalarAdd/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageScalarAdd/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageScalarAdd/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageScalarAdd/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSectionGet/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSectionGet/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSectionGet/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSectionGet/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSetFunction/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSetFunction/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSetFunction/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSetFunction/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageShapePCA/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageShapePCA/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageShapePCA/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageShapePCA/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageShapePCAFit/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageShapePCAFit/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageShapePCAFit/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageShapePCAFit/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageShift/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageShift/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageShift/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageShift/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageShrink/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageShrink/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageShrink/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageShrink/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSiemensStar/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSiemensStar/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSiemensStar/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSiemensStar/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSmoothing/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSmoothing/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSmoothing/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSmoothing/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSphere/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSphere/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSphere/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSphere/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSphereCheck/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSphereCheck/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSphereCheck/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSphereCheck/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSplit/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSplit/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSplit/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSplit/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSquare/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSquare/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSquare/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSquare/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageStack/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageStack/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageStack/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageStack/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSubtraction/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSubtraction/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSubtraction/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSubtraction/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSuperResolution/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSuperResolution/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSuperResolution/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSuperResolution/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageTfunction/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageTfunction/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageTfunction/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageTfunction/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86LINUX64ICC/Makefile b/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86LINUX64ICC/Makefile
index 2a9beb5..ec61247 100755 (executable)
--- a/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86LINUX64ICC/Makefile
+++ b/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86LINUX64ICC/Makefile
@@ -78,8 +78,8 @@ $(OBJECTNAME): $(MODULES) $(LIBFILES)
        fi
        @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
        then \
-               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
-               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
        fi
 
 

diff --git a/src/Tools/mrcImage/mrcView/src/X86LINUX64ICC/.Depend b/src/Tools/mrcImage/mrcView/src/X86LINUX64ICC/.Depend
index e69de29..0503fb0 100644 (file)
--- a/src/Tools/mrcImage/mrcView/src/X86LINUX64ICC/.Depend
+++ b/src/Tools/mrcImage/mrcView/src/X86LINUX64ICC/.Depend
@@ -0,0 +1,20 @@
+eosmrcView.o: eosmrcView.cc /usr/include/stdio.h /usr/include/features.h \
+ /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h \
+ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
+ /usr/include/bits/types.h /usr/include/bits/typesizes.h \
+ /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h \
+ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
+ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
+ /usr/include/stdlib.h /usr/include/bits/waitflags.h \
+ /usr/include/bits/waitstatus.h /usr/include/endian.h \
+ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
+ /usr/include/xlocale.h /usr/include/sys/types.h /usr/include/time.h \
+ /usr/include/sys/select.h /usr/include/bits/select.h \
+ /usr/include/bits/sigset.h /usr/include/bits/time.h \
+ /usr/include/sys/sysmacros.h /usr/include/bits/pthreadtypes.h \
+ /usr/include/alloca.h /usr/include/tk.h /usr/include/tcl.h \
+ /usr/include/tclDecls.h /usr/include/tclPlatDecls.h \
+ /usr/include/X11/Xlib.h /usr/include/X11/X.h \
+ /usr/include/X11/Xfuncproto.h /usr/include/X11/Xosdefs.h \
+ /usr/include/tkDecls.h