OSDN Git Service

deleted: bin/mrcImateToPointsSet v2.3.14p0183
authorTakuo Yasunaga <yasunaga@bio.kyutech.ac.jp>
Sun, 13 Sep 2015 01:21:59 +0000 (10:21 +0900)
committerTakuo Yasunaga <yasunaga@bio.kyutech.ac.jp>
Sun, 13 Sep 2015 01:21:59 +0000 (10:21 +0900)
modified:   src/Tools/mrcImage/mrcImageChainCodeCalc/Config/OptionControlFile
modified:   src/Tools/mrcImage/mrcImageEdgeCalc/Config/OptionControlFile
deleted:    src/Tools/mrcImage/mrcImateToPointsSet/

34 files changed:
bin/mrcImateToPointsSet [deleted symlink]
bin/wish/Display2/tclIndex
src/Tools/mrcImage/mrcImageChainCodeCalc/Config/OptionControlFile
src/Tools/mrcImage/mrcImageEdgeCalc/Config/OptionControlFile
src/Tools/mrcImage/mrcImateToPointsSet/Config/Define.inc [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/Config/OptionControlFile [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/Config/Target.inc [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/Makefile [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/doc/Makefile [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/inc/config.h [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/inc/mrcImateToPointsSet.h [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/src/.Depend [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/src/.Source [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHA [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHALINUX [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHALINUX5 [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHAOSF1 [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/CELLLINUX64 [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/HP [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/I386LINUX [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/I686LINUX [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/Makefile [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/src/SGI [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/SPARC [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64 [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64ICC [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/X86MAC64 [deleted symlink]
src/Tools/mrcImage/mrcImateToPointsSet/src/argCheck.c [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/src/init.c [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/src/mrcImateToPointsSet.c [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/src/mrcImateToPointsSet.html [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/src/mrcImateToPointsSet.pane [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/src/usage.c [deleted file]
src/Tools/mrcImage/mrcImateToPointsSet/src/util.c [deleted file]

diff --git a/bin/mrcImateToPointsSet b/bin/mrcImateToPointsSet
deleted file mode 120000 (symlink)
index eddb955..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../sbin/MachineIndependent
\ No newline at end of file
index 75a715a..8fd9302 100644 (file)
@@ -49,6 +49,7 @@ set auto_index(menuMultiRoiOKCommand) [list source [file join $dir Display2MenuR
 set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
 set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
 set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
 set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
 set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
 set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
@@ -131,4 +132,3 @@ set auto_index(sectionClearAll) [list source [file join $dir SectionUtil.wish]]
 set auto_index(sectionClear) [list source [file join $dir SectionUtil.wish]]
 set auto_index(sectionChange) [list source [file join $dir SectionUtil.wish]]
 set auto_index(unitCellRecreate) [list source [file join $dir UnitCell.wish]]
-set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
index 465fc1c..3a4be17 100755 (executable)
@@ -1,6 +1,6 @@
 # OptionControlFile
 # FileFormat
-"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile","NULL"
-"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile","NULL"
+"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile::mrcImage","NULL"
+"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile::mrcImage","NULL"
 "-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
 "-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
index 4795b35..31d6066 100755 (executable)
@@ -1,7 +1,7 @@
 # OptionControlFile
 # FileFormat
-"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile","NULL"
-"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile","NULL"
+"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile::mrcImage","NULL"
+"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile::mrcImage","NULL"
 "-n","-n[eighbor]","Neighbor","Optional","1","1","Neighbor","Integer","8"
 "-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
 "-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/Config/Define.inc b/src/Tools/mrcImage/mrcImateToPointsSet/Config/Define.inc
deleted file mode 100755 (executable)
index fc71e4d..0000000
+++ /dev/null
@@ -1,4 +0,0 @@
-OBJECTNAME = mrcImateToPointsSet
-EXTRA_LIB  =
-EXTRA_CCOPTS =
-EXTRA_INC =
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/Config/OptionControlFile b/src/Tools/mrcImage/mrcImateToPointsSet/Config/OptionControlFile
deleted file mode 100755 (executable)
index 465fc1c..0000000
+++ /dev/null
@@ -1,6 +0,0 @@
-# OptionControlFile
-# FileFormat
-"-i","-i[nput]","InputDataFile","Essential","1","1","In","inFile","NULL"
-"-o","-o[utput]","OutputDataFile","Essential","1","1","Out","outFile","NULL"
-"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
-"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/Config/Target.inc b/src/Tools/mrcImage/mrcImateToPointsSet/Config/Target.inc
deleted file mode 100755 (executable)
index e69de29..0000000
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/Makefile b/src/Tools/mrcImage/mrcImateToPointsSet/Makefile
deleted file mode 100755 (executable)
index 6c4a336..0000000
+++ /dev/null
@@ -1,115 +0,0 @@
-include ../../../Config/Define.inc
-include ../../Config/Define.inc
-include ../Config/Define.inc
-include Config/Define.inc
-
-all:
-       cd src; make all; cd ..
-
-install:
-       cd src; make install; cd ..
-
-
-putSF:
-       if [ -f private ] ; \
-       then \
-               echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
-       else \
-               cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
-       fi
-
-put:
-       cd src; make put; cd ..
-
-clean:
-       cd src; make clean; cd ..
-
-depend:
-       cd src; make depend; cd ..
-
-check:
-       @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
-               echo making directory; \
-               mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
-       fi
-       ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE); 
-       @$(RM) src/Makefile
-       @echo "New src/Makefile" 
-       @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
-       @cd src; touch $(OSTYPE)/.Depend; make depend
-
-update:
-       @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
-               echo making directory; \
-               mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
-       fi
-       ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE); 
-       @$(RM) src/Makefile
-       @echo "New src/Makefile" 
-       @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
-       @cd src; touch $(OSTYPE)/.Depend; echo "Y" | make update      
-
-cvsupdate::
-       cvs -d $(EOS_CVSROOT) update -d 
-
-cvscommit::
-       cvs -d $(EOS_CVSROOT) commit
-
-backup:
-       @cd ../../../..;     \
-       echo $(OBJECTNAME) ; \
-       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config       ; \
-       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
-       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
-       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
-       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
-       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
-       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
-       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
-       tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
-
-backup-all:
-       @cd ../../../..;     \
-       echo $(OBJECTNAME) ; \
-       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config       ; \
-       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
-       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
-       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
-       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
-       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
-       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
-       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
-       tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
-       
-distribute:
-       cd ../../../..;     \
-       echo $(OBJECTNAME) ; \
-       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config     ; \
-       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
-       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
-       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
-       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
-       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
-       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
-       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
-       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
-       tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
-       
-distribute-all:
-       @cd ../../../..;     \
-       echo $(OBJECTNAME) ; \
-       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config     ; \
-       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
-       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
-       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
-       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
-       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
-       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
-       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
-       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
-       tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
-
-eosintroduce:
-       ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./ 
-
-include Config/Target.inc
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/doc/Makefile b/src/Tools/mrcImage/mrcImateToPointsSet/doc/Makefile
deleted file mode 100755 (executable)
index 8215199..0000000
+++ /dev/null
@@ -1,2 +0,0 @@
-install:
-       cd ../src; make install-doc; cd ../doc  
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/inc/config.h b/src/Tools/mrcImage/mrcImateToPointsSet/inc/config.h
deleted file mode 100755 (executable)
index 3f6375c..0000000
+++ /dev/null
@@ -1,6 +0,0 @@
-#ifndef CONFIG_H
-#define CONFIG_H
-
-#include "../inc/mrcImateToPointsSet.h"
-
-#endif /* CONFIG_H */
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/inc/mrcImateToPointsSet.h b/src/Tools/mrcImage/mrcImateToPointsSet/inc/mrcImateToPointsSet.h
deleted file mode 100755 (executable)
index f8a5305..0000000
+++ /dev/null
@@ -1,46 +0,0 @@
-#ifndef MRCIMATETOPOINTSSET_H
-#define MRCIMATETOPOINTSSET_H
-#include <stdio.h>
-#include <stdlib.h>
-
-#define OPTION_FLAG     '-'
-#define OPTION_FLAG_POS (0)
-#define OPTION_POS      (1)
-
-
-
-
-typedef struct mrcImateToPointsSetInfo {
-    long flagRedirect;
-
-    long flagIn;
-    char* In;
-    FILE* fptIn;
-    
-    long flagOut;
-    char* Out;
-    FILE* fptOut;
-    
-    long flagconfigFile;
-    char* configFile;
-    FILE* fptconfigFile;
-    
-    long flagmode;
-    long mode;
-    
-} mrcImateToPointsSetInfo;
-#ifdef __cplusplus
-extern "C" {
-#endif
-extern void argCheck(mrcImateToPointsSetInfo* info, int argc, char* avgv[]);
-extern void khorosInit(int argc, char* avgv[]);
-extern void init0(mrcImateToPointsSetInfo* info);
-extern void init1(mrcImateToPointsSetInfo* info);
-extern void usage(char* usage);
-extern void additionalUsage(void);
-extern void htmlBeforeUsage(char* usage);
-extern void htmlAfterUsage(char* usage);
-#ifdef __cplusplus
-};
-#endif
-#endif /* MRCIMATETOPOINTSSET_H */
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/.Depend b/src/Tools/mrcImage/mrcImateToPointsSet/src/.Depend
deleted file mode 100755 (executable)
index e69de29..0000000
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/.Source b/src/Tools/mrcImage/mrcImateToPointsSet/src/.Source
deleted file mode 100755 (executable)
index e69de29..0000000
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHA b/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHA
deleted file mode 120000 (symlink)
index 80bc54c..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/ALPHA/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHA
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHALINUX b/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHALINUX
deleted file mode 120000 (symlink)
index 456d75b..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/ALPHALINUX/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHALINUX
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHALINUX5 b/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHALINUX5
deleted file mode 120000 (symlink)
index bc049a3..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/ALPHALINUX5/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHALINUX5
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHAOSF1 b/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHAOSF1
deleted file mode 120000 (symlink)
index 807afdd..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/ALPHAOSF1/src/Tools/mrcImage/mrcImateToPointsSet/src/ALPHAOSF1
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/CELLLINUX64 b/src/Tools/mrcImage/mrcImateToPointsSet/src/CELLLINUX64
deleted file mode 120000 (symlink)
index d30a040..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/CELLLINUX64/src/Tools/mrcImage/mrcImateToPointsSet/src/CELLLINUX64
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/HP b/src/Tools/mrcImage/mrcImateToPointsSet/src/HP
deleted file mode 120000 (symlink)
index cdd0c01..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/HP/src/Tools/mrcImage/mrcImateToPointsSet/src/HP
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/I386LINUX b/src/Tools/mrcImage/mrcImateToPointsSet/src/I386LINUX
deleted file mode 120000 (symlink)
index f96c73a..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/I386LINUX/src/Tools/mrcImage/mrcImateToPointsSet/src/I386LINUX
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/I686LINUX b/src/Tools/mrcImage/mrcImateToPointsSet/src/I686LINUX
deleted file mode 120000 (symlink)
index 737dd1e..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/I686LINUX/src/Tools/mrcImage/mrcImateToPointsSet/src/I686LINUX
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/Makefile b/src/Tools/mrcImage/mrcImateToPointsSet/src/Makefile
deleted file mode 100755 (executable)
index 7beb110..0000000
+++ /dev/null
@@ -1,427 +0,0 @@
-include ../Config/Define.inc
-include ../../Config/Define.inc
-include ../../../Config/Define.inc
-include ../../../../Config/Define.inc
-
-EOSHOME=../../../../../
-DSTDIR=$(EOSHOME)/bin
-DSTDOC=$(EOSHOME)/doc
-DSTTAR=$(EOSHOME)/tar
-
-INCFILES   = 
-
-LIBFILES   = \
-                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
-
-LIBFILESDEBUG   = \
-                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
-
-SRCC  = \
-                       $(OBJECTNAME).c \
-                       init.c \
-                       argCheck.c \
-                       usage.c  \
-                       util.c \
-
-SRCCXX  = \
-                       $(OBJECTNAME).cc \
-                       init.cc \
-                       argCheck.cc \
-                       usage.cc  \
-                       util.cc \
-
-MODULES    = \
-                       $(OBJECTNAME).o \
-                       init.o \
-                       argCheck.o \
-                       usage.o  \
-                       util.o \
-
-REALMODULES    = \
-                       $(OSTYPE)/$(OBJECTNAME).o \
-                       $(OSTYPE)/init.o \
-                       $(OSTYPE)/argCheck.o \
-                       $(OSTYPE)/usage.o \
-                       $(OSTYPE)/util.o 
-
-MODULESDEBUG    = \
-                       $(OBJECTNAME).debugo \
-                       init.debugo \
-                       argCheck.debugo \
-                       usage.debugo  \
-                       util.debugo \
-
-REALMODULESDEBUG    = \
-                       $(OSTYPE)/$(OBJECTNAME).debugo \
-                       $(OSTYPE)/init.debugo \
-                       $(OSTYPE)/argCheck.debugo \
-                       $(OSTYPE)/usage.debugo \
-                       $(OSTYPE)/util.debugo 
-
-
-all: $(OSTYPE)/$(OBJECTNAME) 
-       if [ ! -L $(OSTYPE) ] ; then \
-               moveHostdependent; \
-       fi
-
-debug: $(OSTYPE)/$(OBJECTNAME).debug
-
-cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
-
-
-$(OSTYPE)/$(OBJECTNAME)::
-       @$(RM) -f $(OSTYPE)/Makefile ; \
-       $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
-       cd $(OSTYPE); \
-       $(MAKE) $(OBJECTNAME)  WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
-
-$(OSTYPE)/$(OBJECTNAME).debug::
-       @$(RM) -f $(OSTYPE)/Makefile ; \
-       $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
-       cd $(OSTYPE); \
-       $(MAKE) $(OBJECTNAME).debug  WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
-
-$(OSTYPE)/$(OBJECTNAME).cudagdb::
-       @$(RM) -f $(OSTYPE)/Makefile ; \
-       $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
-       cd $(OSTYPE); \
-       $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
-
-cvsupdate::
-       cvs -d $(EOS_CVSROOT) update -d 
-
-cvscommit::
-       cvs -d $(EOS_CVSROOT) commit 
-
-edit:
-       @if [ -r $(OBJECTNAME).c ]; \
-       then \
-               sccsEdit $(OBJECTNAME).c; \
-       else \
-               echo "Source files are already editable"; \
-       fi
-       @if [ -r wish/$(OBJECTNAME).wish ]; \
-       then \
-               cd wish; sccsEdit $(OBJECTNAME).wish; \
-       else \
-               echo "Source files (wish) are already editable."; \
-       fi
-       @if [ -r ruby/$(OBJECTNAME).rb ]; \
-       then \
-               cd ruby; sccsEdit $(OBJECTNAME).rb; \
-       else \
-               echo "Source files (ruby) are already editable."; \
-       fi
-       @if [ -r perl/$(OBJECTNAME).pl ]; \
-       then \
-               cd perl; sccsEdit $(OBJECTNAME).pl ; \
-       else \
-               echo "Source files (perl) are already editable."; \
-       fi
-       @if [ -r ../Config/OptionControlFile ]; \
-       then \
-               cd ../Config; sccsEdit OptionControlFile; \
-       else \
-               echo "OptionControlFile are already editable."; \
-       fi
-       
-unedit:
-       @if [ -w $(OBJECTNAME).c ]; \
-       then \
-               sccsUnedit $(OBJECTNAME).c; \
-       else \
-               echo "Source files are not editable"; \
-       fi
-       @if [ -w wish/$(OBJECTNAME).wish ]; \
-       then \
-               cd wish; sccsUnedit $(OBJECTNAME).wish; \
-       else \
-               echo "Source files (wish) are not editable."; \
-       fi
-       @if [ -w ruby/$(OBJECTNAME).rb]; \
-       then \
-               cd ruby; sccsUnedit $(OBJECTNAME).rb; \
-       else \
-               echo "Source files (ruby) are not editable."; \
-       fi
-       @if [ -w perl/$(OBJECTNAME).pl ]; \
-       then \
-               cd perl; sccsUnedit $(OBJECTNAME).pl ; \
-       else \
-               echo "Source files (ruby) are not editable."; \
-       fi
-       @if [ -w ../Config/OptionControlFile ]; \
-       then \
-               cd ../Config; sccsUnedit OptionControlFile; \
-       else \
-               echo "OptionControlFile are not editable."; \
-       fi
-       
-report:
-       @if [ -r $(OBJECTNAME).c ]; \
-       then \
-               sccsReport $(OBJECTNAME).c; \
-       else \
-               echo "Source files are already editable"; \
-       fi
-       @if [ -r wish/$(OBJECTNAME).wish ]; \
-       then \
-               cd wish; sccsReport $(OBJECTNAME).wish; \
-       else \
-               echo "Source files (wish) are already editable."; \
-       fi
-       @if [ -r ruby/$(OBJECTNAME).rb ]; \
-       then \
-               cd ruby; sccsReport $(OBJECTNAME).rb; \
-       else \
-               echo "Source files (ruby) are already editable."; \
-       fi
-       @if [ -r perl/$(OBJECTNAME).pl ] ; \
-       then \
-               cd perl; sccsReport $(OBJECTNAME).pl ; \
-       else \
-               echo "Source files (perl) are already editable."; \
-       fi
-       @if [ -r ../Config/OptionControlFile ]; \
-       then \
-               cd ../Config; sccsReport OptionControlFile; \
-       else \
-               echo "OptionControlFile are already editable."; \
-       fi
-
-clean : 
-       rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
-               $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
-               $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
-               $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
-               $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
-               *.bak *.$(OSTYPE) core
-
-install: install-bin install-doc install-wish install-ruby install-shell install-perl
-       @if [ dummy$(KHOROS_KENGOBJ) != dummy ]  ; \
-       then \
-               if [ -x $(KHOROS_KGENOBJ) ] ;  \
-               then \
-                       make install-khoros ; \
-               fi; \
-       fi 
-
-install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME) 
-
-$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME) 
-       @echo ---- Installing to bin
-       @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
-       @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
-       then \
-               mkdir $(DSTDIR)/$(OSTYPE); \
-       fi
-       @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
-       then \
-               echo "Compilation is complete"; \
-               $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
-               $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
-               $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
-       else \
-               echo "Compilation is incomplete. $(OBJECTNAME)"; \
-       fi
-       @echo ---- end of bin
-
-install-wish:
-       @if [ -d wish ]; \
-       then \
-               echo "---- Tcl/Tk file Install"; \
-               if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
-               then \
-                       mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
-               fi ; \
-               $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
-               $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/*  ;\
-               touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
-               $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
-               echo "---- Tcl/Tk file Installed";\
-       fi
-
-install-ruby:
-       @if [ -d ruby ]; \
-       then \
-               echo "---- Ruby/Tk file Install"; \
-               if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
-               then \
-                       mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
-               fi ; \
-               $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
-               $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
-               echo "---- Ruby/Tk file Installed"; \
-       fi
-
-install-perl:
-       @if [ -d perl ]; \
-       then \
-               echo "---- Perl/Tk file Install"; \
-               if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
-               then \
-                       mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
-               fi; \
-               $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
-               $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
-               echo "---- Perl/Tk file Installed"; \
-       fi
-
-install-shell:
-       @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
-       then \
-               mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
-       fi
-       @if [ -d shell ]; \
-       then \
-               echo "---- Shell file Install"; \
-               if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
-               then \
-                       mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
-               fi ; \
-               $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
-               $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
-               echo "---- Shell file Installed"; \
-       fi
-
-install-khoros:
-       @echo Installing to khoros
-       @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
-       then \
-               echo kgenobj;\
-               $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form  -lang ksh ; \
-       fi
-       @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
-       then \
-               $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
-       fi
-       @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
-       then \
-               $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
-               if [ $?  ] ; \
-               then \
-                       echo "-- setting khoros ---" ; \
-                       if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
-                       then \
-                               $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
-                               $(RM) -f $(OBJECTNAME).pane ; \
-                               $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
-                               $(CD) ../../ ; \
-                               $(CHMOD) -R 555 $(OBJECTNAME); \
-                       else \
-                               echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
-                       fi ; \
-               else \
-                       echo "Failed !!: Cannot chage mode in installing  $(OBJECTNAME) to khoros system"; \
-               fi ; \
-               echo "-- end of khoros-installing"; \
-       fi
-
-install-doc: html 
-       @if [ ! -d $(DSTDOC)/SmallTools ]; \
-       then \
-               mkdir $(DSTDOC)/SmallTools ;\
-       fi
-       @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
-       then \
-               $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
-       fi
-       @$(CP) $(OBJECTNAME).html  $(DSTDOC)/SmallTools/$(OBJECTNAME).html
-       @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
-       @if [ -f ../doc/*.html ]; \
-       then \
-               $(CP) ../doc/*.html  $(DSTDOC)/SmallTools/ ;\
-       fi
-       @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
-       @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
-       then \
-               cd $(DSTDOC)/SmallTools; $(MAKE); \
-       fi
-
-html: $(OBJECTNAME).html
-
-configFileRead:
-       @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
-
-$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
-       @echo creating html
-       @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
-       @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
-       @$(RM) $(OBJECTNAME).html.tmp
-
-$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
-       @ln -s -f ../sbin/MachineIndependent $@
-
-depend::
-       @echo dependency checking now
-       @if [ ! -L $(OSTYPE) ] ; then \
-               moveHostdependent; \
-       fi
-       rm -f $(OSTYPE)/.Depend 
-       #echo C
-       @if [ -f $(OBJECTNAME).c ] ; \
-       then \
-               echo "dependency: *.c"; \
-               echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c   ; \
-                    $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c                  >> $(OSTYPE)/.Depend ; \
-       fi
-       #echo CC
-       @if [ -f $(OBJECTNAME).cc ] ; \
-       then \
-               echo "dependency: *.cc"; \
-               echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
-                    $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
-       fi
-       @if [ -f $(OBJECTNAME).ccm ] ; \
-       then \
-               echo "dependency: *.ccm"; \
-               echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
-                    $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
-       fi
-       @if [ -f $(OBJECTNAME).cu ] ; \
-       then \
-               echo "dependency: *.cu"; \
-               echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
-                    $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
-       fi
-
-update:../Config/OptionControlFile
-       maketool $(CLASSNAME) $(OBJECTNAME) update
-
-changeName::
-
-Test:$(OSTYPE)/$(OBJECTNAME) TestDir
-       @if [ -f test/Makefile ] ; \
-       then \
-               cd test; make ; \
-       else \
-               echo "No test Makefile"; \
-       fi
-
-TestDir::
-       @if [ ! -d test ] ; \
-       then \
-               echo "Creating test dir"; \
-               mkdir  test; \
-       fi
-       @if [ ! -f test/Makefile ] ; \
-       then \
-               echo "Creating Makefile"; \
-               cd test; \
-               protoTestMakefileCreate; \
-       fi
-       @if [ ! -d test/data ]; \
-       then \
-               mkdir $(EOSHOME)/data/$(OBJECTNAME); \
-               cd test; \
-               ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
-       fi 
-
-tar::
-       cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
-                                                            ../bin/*/$(OBJECTNAME).* \
-                                                            ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
-                               ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
-
--include $(OSTYPE)/.Depend
--include ../Config/Target.inc
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/SGI b/src/Tools/mrcImage/mrcImateToPointsSet/src/SGI
deleted file mode 120000 (symlink)
index a6b63ea..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/SGI/src/Tools/mrcImage/mrcImateToPointsSet/src/SGI
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/SPARC b/src/Tools/mrcImage/mrcImateToPointsSet/src/SPARC
deleted file mode 120000 (symlink)
index 0d0b893..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/SPARC/src/Tools/mrcImage/mrcImateToPointsSet/src/SPARC
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64 b/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64
deleted file mode 120000 (symlink)
index 1ac9f4f..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64ICC b/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64ICC
deleted file mode 120000 (symlink)
index 066babf..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/X86LINUX64ICC/src/Tools/mrcImage/mrcImateToPointsSet/src/X86LINUX64ICC
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/X86MAC64 b/src/Tools/mrcImage/mrcImateToPointsSet/src/X86MAC64
deleted file mode 120000 (symlink)
index 92c8720..0000000
+++ /dev/null
@@ -1 +0,0 @@
-../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImateToPointsSet/src/X86MAC64
\ No newline at end of file
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/argCheck.c b/src/Tools/mrcImage/mrcImateToPointsSet/src/argCheck.c
deleted file mode 100755 (executable)
index 85016a4..0000000
+++ /dev/null
@@ -1,96 +0,0 @@
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-#include <math.h>
-#include "../inc/config.h"
-#include "genUtil.h"
-#include "String.h"
-#include "File.h"
-#include "Memory.h"
-
-
-void
-argCheck(mrcImateToPointsSetInfo* info, int argc, char* argv[])
-{
-    long i;
-    char s[1024];
-    FILE* fpt;
-    
-    if(NULL==(fpt=fopen(".EosLog", "a+"))) { 
-        
-    } else {
-        for(i=0; i<argc; i++) {
-            fprintf(fpt, "%s ", argv[i]);
-        }
-        fprintf(fpt, "\n");
-        fclose(fpt);
-    }
-    for(i=1; i<argc; i++) {
-        if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
-            SSWITCH(argv[i]+OPTION_POS)
-                SCASE("i") {
-                    if(i+1<argc) {
-                        info->In = stringGetNthWord(argv[i+1], 1, " ,");
-                        i++;
-                        info->flagIn++;
-                    } else {
-                        usage(argv[0]);
-                        exit(EXIT_FAILURE);
-                    }
-                    SBREAK;
-                }
-                SCASE("o") {
-                    if(i+1<argc) {
-                        info->Out = stringGetNthWord(argv[i+1], 1, " ,");
-                        i++;
-                        info->flagOut++;
-                    } else {
-                        usage(argv[0]);
-                        exit(EXIT_FAILURE);
-                    }
-                    SBREAK;
-                }
-                SCASE("c") {
-                    if(i+1<argc) {
-                        info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
-                        i++;
-                        info->flagconfigFile++;
-                    } else {
-                        usage(argv[0]);
-                        exit(EXIT_FAILURE);
-                    }
-                    SBREAK;
-                }
-                SCASE("m") {
-                    if(i+1<argc) {
-                        info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
-                        i++;
-                        info->flagmode++;
-                    } else {
-                        usage(argv[0]);
-                        exit(EXIT_FAILURE);
-                    }
-                    SBREAK;
-                }
-                SCASE("h") {
-                    usage(argv[0]);
-                    exit(EXIT_SUCCESS);
-                    break;
-                }
-                SCASE("html") {
-                    htmlBeforeUsage(argv[0]);
-                    usage(argv[0]);
-                    htmlAfterUsage(argv[0]);
-                    exit(EXIT_SUCCESS);
-                    break;
-                }
-                SDEFAULT {
-                    fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
-                    usage(argv[0]);
-                    exit(EXIT_FAILURE);
-                    break;
-                }
-            SSWITCHEND;
-        } 
-    } 
-} 
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/init.c b/src/Tools/mrcImage/mrcImateToPointsSet/src/init.c
deleted file mode 100755 (executable)
index 8db3d52..0000000
+++ /dev/null
@@ -1,91 +0,0 @@
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-#include <math.h>
-#include "../inc/config.h"
-#include "genUtil.h"
-#include "String.h"
-#include "File.h"
-#include "Memory.h"
-
-
-void
-init0(mrcImateToPointsSetInfo* info)
-{
-    info->fptIn = NULL;    info->flagIn = 0;
-    info->fptOut = NULL;    info->flagOut = 0;
-    info->fptconfigFile = NULL;    info->flagconfigFile = 0;
-    info->mode = 0;    info->flagmode = 0;
-}
-
-void
-init1(mrcImateToPointsSetInfo* info)
-{
-    char s[1024];
-    int i;
-    if(!info->flagIn) {
-        stringGetFromFile(s, "In", stdin, stdout, 0);
-        info->In = stringGetNthWord(s, 1, " ,\t");
-        info->flagIn++;
-    }
-    if(info->flagIn) {
-        info->fptIn = fileOpen(info->In, "r");
-    }
-    
-    if(!info->flagOut) {
-        stringGetFromFile(s, "Out", stdin, stdout, 0);
-        info->Out = stringGetNthWord(s, 1, " ,\t");
-        info->flagOut++;
-    }
-    if(info->flagOut) {
-        info->fptOut = fileOpen(info->Out, "w");
-    }
-    
-    if(info->flagconfigFile) {
-        info->fptconfigFile = fileOpen(info->configFile, "r");
-    }
-    
-    if(info->flagmode) {
-    }
-    
-}
-#ifdef KHOROS
-#include <stdio.h>
-#include "bootstrap.h"
-#include "dataserv.h"
-#include "datamanip.h"
-extern void func_usage_additions(void);
-extern void func_free_args(kexit_status status, kaddr client_data);
-extern void func_get_args(kform* pane);
-
-void
-func_usage_additions(void)
-{
-}
-void
-func_free_args(kexit_status status, kaddr client_data)
-{
-}
-void
-func_get_args(kform* pane)
-{
-}
-void
-khorosInit(int argc, char* argv[])
-{
-    char* eospath;
-    char  panepath[1024];
-    FILE* fpt;
-    
-    eospath = getenv("EOS_HOME");
-    sprintf(panepath, "%s/src/Tools/mrcImage/mrcImateToPointsSet/src/mrcImateToPointsSet.pane", eospath);
-    khoros_initialize(argc, argv, "EOS");
-    fpt = fopen(panepath, "r");    if(NULL!=fpt) {
-        fclose(fpt);
-        kclui_initialize(panepath, KGEN_NONE, "EOS", "mrcImateToPointsSet",
-                     func_usage_additions,
-                     func_get_args,
-                     func_free_args);
-    }
-}
-#endif /* KHOROS */ 
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/mrcImateToPointsSet.c b/src/Tools/mrcImage/mrcImateToPointsSet/src/mrcImateToPointsSet.c
deleted file mode 100755 (executable)
index 44c74ab..0000000
+++ /dev/null
@@ -1,53 +0,0 @@
-/*
-# mrcImateToPointsSet : $Revision$  
-# $Date$ 
-# Created by $Author$
-# Usage : mrcImateToPointsSet
-# Attention
-#   $Loccker$
-#      $State$ 
-#
-*/
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-#include <math.h>                  
-#define GLOBAL_DECLARATION
-#include "../inc/config.h"
-
-#define DEBUG
-#include "genUtil.h"
-#include "mrcImage.h"
-
-/*
-Example:
-typedef struct lmrcImateToPointsSetInfo {
-       float a;
-       int   b;
-} lmrcImateToPointsSetInfo;
-
-typedef enum lmrcImateToPointsSetMode {
-       a=0,
-       b=1
-} lmrcImateToPointsSetMode;
-*/
-
-int
-main(int argc, char* argv[]) 
-{
-       mrcImateToPointsSetInfo info;
-
-       init0(&info);
-    argCheck(&info, argc, argv);
-    init1(&info);
-
-       DEBUGPRINT("Program Start\n");
-
-       exit(EXIT_SUCCESS);
-}
-
-void
-additionalUsage()
-{
-       fprintf(stderr, "----- Additional Usage -----\n");
-}
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/mrcImateToPointsSet.html b/src/Tools/mrcImage/mrcImateToPointsSet/src/mrcImateToPointsSet.html
deleted file mode 100755 (executable)
index f3dc2d3..0000000
+++ /dev/null
@@ -1,18 +0,0 @@
-<HTML>
-<HEAD>
-<TITLE>mrcImateToPointsSet</TITLE>
-</HEAD>
-<BODY>
-<H1>mrcImateToPointsSet</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrcImateToPointsSet
-Options:
-    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
-    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile
-    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
-    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
------ Additional Usage -----
-</PRE>
-</BODY>
-</HTML>
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/mrcImateToPointsSet.pane b/src/Tools/mrcImage/mrcImateToPointsSet/src/mrcImateToPointsSet.pane
deleted file mode 100755 (executable)
index 62b5365..0000000
+++ /dev/null
@@ -1,16 +0,0 @@
--F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
-  -M 1 1 52x1+0+0 +1+0 ' ' subform
-    -P 1 0 52x1+0+1 +0+0 ' ' mrcImateToPointsSet
-      -D 1 0 9x1+0+0 'Options' _gui_options
-        -H 1  6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
-        -E
-        -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImateToPointsSet
-        -H 1  5x1+41+0 'Help' 'help page' $EOS/src/Tools/mrcImage/mrcImateToPointsSet/doc/mrcImateToPointsSet.doc help
-        -Q 1 0 5.25x1+47+0 'Close'
-        -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'InputDataFile' i
-        -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'OutputDataFile' o
-        -I 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'configFile' 'ConfigurationFile' c
-        -i 1 0 1 0 0 -1x1+1+6.000000 0 0 0 0 0 'mode' 'Mode' m
-    -E
-  -E
--E
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/usage.c b/src/Tools/mrcImage/mrcImateToPointsSet/src/usage.c
deleted file mode 100755 (executable)
index c3e4fc6..0000000
+++ /dev/null
@@ -1,36 +0,0 @@
-#include <stdio.h>
-#include <stdlib.h>
-#include "../inc/config.h"
-
-void
-usage(char* thisProgram)
-{
-    fprintf(stderr, "Usage: %s\n", thisProgram);
-    fprintf(stderr, "Options:\n");
-    fprintf(stderr, "    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile\n");
-    fprintf(stderr, "    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile\n");
-    fprintf(stderr, "    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile\n");
-    fprintf(stderr, "    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode\n");
-    additionalUsage();
-}
-
-void
-htmlBeforeUsage(char* thisProgram)
-{
-    fprintf(stderr, "<HTML>\n");
-    fprintf(stderr, "<HEAD>\n");
-    fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
-    fprintf(stderr, "</HEAD>\n");
-    fprintf(stderr, "<BODY>\n");
-    fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
-    fprintf(stderr, "<H2>Usage</H2>\n");
-    fprintf(stderr, "<PRE>\n");
-}
-
-void
-htmlAfterUsage(char* thisProgram)
-{
-    fprintf(stderr, "</PRE>\n");
-    fprintf(stderr, "</BODY>\n");
-    fprintf(stderr, "</HTML>\n");
-}
diff --git a/src/Tools/mrcImage/mrcImateToPointsSet/src/util.c b/src/Tools/mrcImage/mrcImateToPointsSet/src/util.c
deleted file mode 100755 (executable)
index ee5e5f2..0000000
+++ /dev/null
@@ -1,4 +0,0 @@
-#include <stdio.h>
-#include <stdlib.h>
-#include "../inc/config.h"
-