Merge branch 'master' of git.sourceforge.jp:/gitroot/eos/base

Conflicts:
	bin/wish/Display2/tclIndex
	src/Tools/mrcImage/Makefile

diff --cc bin/X86MAC64/Display2
index ed492b1,ed492b1..556781a
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diff --cc bin/X86MAC64/EvaluateCorrelationMapwithCommonLine
index b53de0a,b53de0a..9a43e9a
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diff --cc bin/X86MAC64/FETOrientationSearchByFeatureAlignment
index 7f0d975,7f0d975..03c8404
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diff --cc bin/X86MAC64/FETmapOrientationSearchBySimultaneousFitting
index a8a915e,a8a915e..b2c9933
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diff --cc bin/X86MAC64/WeightCalculationOfCommonLineSearch
index eff928c,eff928c..be8cf95
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diff --cc bin/X86MAC64/bmpFileInfo
index 96c1f32,96c1f32..62d03fd
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diff --cc bin/X86MAC64/ctfDisplay
index ffe0fcd,ffe0fcd..f5f4032
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diff --cc bin/X86MAC64/energyTransferModelResultCheck
index be1f024,be1f024..f6ebff5
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diff --cc bin/X86MAC64/imagesView
index 1d57957,1d57957..93d7a87
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diff --cc bin/X86MAC64/llDataPrint
index d292e97,d292e97..74cf2cd
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diff --cc bin/X86MAC64/marker2Dto3DEstimator
index 0000000,0000000..9ffbf78
new file mode 100755 (executable)
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diff --cc bin/X86MAC64/mrc2map
index c2253f4,c2253f4..cda896b
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diff --cc bin/X86MAC64/mrcFFTFibreDiagram
index 59b5dd2,59b5dd2..9bb2821
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diff --cc bin/X86MAC64/mrcFFTShellInfo
index 3eb9708,3eb9708..7eb4d1e
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diff --cc bin/X86MAC64/mrcFFTplainreduce
index 35dc213,35dc213..2f7fe2d
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diff --cc bin/X86MAC64/mrcImage1DProjectionfrom2D
index bf72ceb,bf72ceb..0f11517
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diff --cc bin/X86MAC64/mrcImage1dAverageByCorrelation
index 2d84733,2d84733..ec87ff0
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diff --cc bin/X86MAC64/mrcImage1dShiftAverageByAnnealing
index 72a9f25,72a9f25..502b6fb
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diff --cc bin/X86MAC64/mrcImage1dShiftByCorrelation
index e4a9595,e4a9595..8348bab
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diff --cc bin/X86MAC64/mrcImage3DHighResoEmphasis
index d29d295,d29d295..20551a3
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diff --cc bin/X86MAC64/mrcImage3DPad
index b1b2f92,b1b2f92..a592ce2
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diff --cc bin/X86MAC64/mrcImageAbnormalValueRemove
index 753e826,753e826..922d94b
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diff --cc bin/X86MAC64/mrcImageAdd
index ab06907,ab06907..836f2fd
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diff --cc bin/X86MAC64/mrcImageAddValue
index 6c3f333,6c3f333..119cae1
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diff --cc bin/X86MAC64/mrcImageAutoCorrelationWithWindowing
index 5e30f49,5e30f49..816fdd3
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diff --cc bin/X86MAC64/mrcImageAutoRotationCorrelation
index 26f63d7,26f63d7..b5f4468
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diff --cc bin/X86MAC64/mrcImageAutoRotationCorrelation3D
index 7540c0e,7540c0e..e9095a4
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diff --cc bin/X86MAC64/mrcImageAverage
index 99acdec,99acdec..9b13f4f
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diff --cc bin/X86MAC64/mrcImageBinalization
index 99cbd4d,99cbd4d..16496f7
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diff --cc bin/X86MAC64/mrcImageCTFCompensation
index 4e08d52,4e08d52..a0b9260
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diff --cc bin/X86MAC64/mrcImageCTFDetermination
index 73240d3,73240d3..7c1349e
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diff --cc bin/X86MAC64/mrcImageCTFObservation
index 7cd7650,7cd7650..ad5c6d5
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diff --cc bin/X86MAC64/mrcImageCTFSN
index 57687a5,57687a5..a8b95ba
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diff --cc bin/X86MAC64/mrcImageCVE
index 05b0e9a,05b0e9a..57867e9
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diff --cc bin/X86MAC64/mrcImageClusterAnalysis
index 3e3b980,3e3b980..16704db
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diff --cc bin/X86MAC64/mrcImageCommonLineSearch
index fa6a07a,fa6a07a..8dfb5b9
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diff --cc bin/X86MAC64/mrcImageConvolution
index 71cc8f5,71cc8f5..3f3774b
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diff --cc bin/X86MAC64/mrcImageDeconvolution
index e763a54,e763a54..d65e2d8
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diff --cc bin/X86MAC64/mrcImageEdgeEnhancement
index da267c1,df59094..007f171
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diff --cc bin/X86MAC64/mrcImageFeatureExtraction
index 6fbf0df,6fbf0df..7cd23a6
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diff --cc bin/X86MAC64/mrcImageFilteringbyFile
index d41e4b3,d41e4b3..c699e9e
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diff --cc bin/X86MAC64/mrcImageFloating
index 120122e,120122e..9bcabc9
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diff --cc bin/X86MAC64/mrcImageFractalFourierShellCorrelation
index 4c17d12,4c17d12..1587caf
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diff --cc bin/X86MAC64/mrcImageHighPassFilter
index 3f71201,3f71201..c9a818a
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diff --cc bin/X86MAC64/mrcImageHighlighting
index 2ae669e,2ae669e..f49e8c4
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diff --cc bin/X86MAC64/mrcImageInverseRadonTransform
index 3880173,3880173..1ed187c
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diff --cc bin/X86MAC64/mrcImageLowPassFilter
index 9d32f88,9d32f88..0da17a6
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diff --cc bin/X86MAC64/mrcImageMontageCreate
index 6196f3f,6196f3f..060637d
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diff --cc bin/X86MAC64/mrcImageMultiCTFCompensation
index 24c92db,24c92db..de4967b
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diff --cc bin/X86MAC64/mrcImageMultiCTFDetermination
index 1a97a58,1a97a58..6dfd459
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diff --cc bin/X86MAC64/mrcImageMultiplying
index 1d668a6,1d668a6..cc8b7c7
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diff --cc bin/X86MAC64/mrcImageNfoldAxisSearch
index 0d1ad0d,0d1ad0d..e8f46e2
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diff --cc bin/X86MAC64/mrcImageNormalizedSubtraction
index bdfd710,bdfd710..4167a7b
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diff --cc bin/X86MAC64/mrcImageNormalizing
index f665a10,f665a10..a2108b9
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diff --cc bin/X86MAC64/mrcImageOddBoxel
index 1b8cf00,1b8cf00..903e281
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diff --cc bin/X86MAC64/mrcImageOrientationSearchBySimultaneousMinimization
index 6c51791,6c51791..2f3e6e5
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diff --cc bin/X86MAC64/mrcImagePad
index aa6b762,aa6b762..7724764
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diff --cc bin/X86MAC64/mrcImagePeakSearch
index 87c4c4a,87c4c4a..5650977
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diff --cc bin/X86MAC64/mrcImagePixelDataGet
index d9c94f7,d9c94f7..67e9da9
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diff --cc bin/X86MAC64/mrcImagePosterization
index b6ad5b5,b6ad5b5..a69d28e
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diff --cc bin/X86MAC64/mrcImagePrint
index f81552b,f81552b..05f3eb0
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diff --cc bin/X86MAC64/mrcImageROIs
index 9196ab9,9196ab9..4edd032
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diff --cc bin/X86MAC64/mrcImageRealValueAdd
index 6a92704,6a92704..da4a7f1
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diff --cc bin/X86MAC64/mrcImageResolutionEstimateForFilaments
index 6e4351d,6e4351d..1088fbc
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diff --cc bin/X86MAC64/mrcImageSimilarityEstimate
index ae68a5c,ae68a5c..f266875
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diff --cc bin/X86MAC64/mrcImageSinogramCorrelation
index 8db0638,8db0638..c4993ae
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diff --cc bin/X86MAC64/mrcImageSinogramCreate
index 2265bb7,2265bb7..7c4d606
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diff --cc bin/X86MAC64/mrcImageSinogramFFT
index 2ca05db,2ca05db..b170f18
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diff --cc bin/X86MAC64/mrcImageSolventFlattening
index 76bff21,76bff21..9b81318
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diff --cc bin/X86MAC64/mrcImageSubtraction
index 14188e0,14188e0..1c7fb38
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diff --cc bin/X86MAC64/mrcImageSuperResolution
index 449d16b,449d16b..cdb2be2
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diff --cc bin/X86MAC64/mrcImageSymmetryAverage
index 44c9c08,44c9c08..5f38e2f
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diff --cc bin/X86MAC64/mrcImageSymmetryCentreFind
index dd5eb07,dd5eb07..c774c4f
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diff --cc bin/X86MAC64/mrcImageSymmetryFind
index 938d8f1,938d8f1..223497f
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diff --cc bin/X86MAC64/mrcImageTfunction
index dcf0501,dcf0501..4bfda4a
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diff --cc bin/X86MAC64/mrcImageTiltAxisSearch
index f88a3cc,f88a3cc..f0b9df3
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diff --cc bin/X86MAC64/mrcImageTiltAxisSearchHelp
index c73d30b,c73d30b..d9a4518
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diff --cc bin/X86MAC64/mrcImageToPointsSet
index 22b3fc5,22b3fc5..ed1890d
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diff --cc bin/X86MAC64/mrcImageTransformDescartesIntoPolar
index 8f650cf,8f650cf..b51c540
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diff --cc bin/X86MAC64/mrcImageVarianceAnalysis
index 20b7727,20b7727..cbe55a0
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diff --cc bin/X86MAC64/mrcImageVarianceMap
index f57d9bf,f57d9bf..daacafd
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diff --cc bin/X86MAC64/mrcImagesSinogramCorrelation
index 3a6c09f,3a6c09f..aa0d90d
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diff --cc bin/X86MAC64/mrcMask
index 1802a23,1802a23..ea19514
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diff --cc bin/X86MAC64/mrcRefFFTConvert
index beaec35,beaec35..9cdc00f
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diff --cc bin/X86MAC64/mrcRefHighPassFilter
index db78882,db78882..5d6712b
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diff --cc bin/X86MAC64/mrcRefImagepwzCorPeakFind
index 39f2668,39f2668..1d71dc9
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diff --cc bin/X86MAC64/mrcRefImagepwzCorSmoothing
index 45dc919,45dc919..8622914
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diff --cc bin/X86MAC64/mrcRefImagepwzCorrelation
index f5ce80e,f5ce80e..30b8b47
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diff --cc bin/X86MAC64/mrcRefLowPassFilter
index 144d1f1,144d1f1..79ccfc7
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diff --cc bin/X86MAC64/mrcRefPhaseImageCreate
index 19707e8,19707e8..ab35618
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diff --cc bin/X86MAC64/mrcSinogramFET
index 04e68c9,04e68c9..2499b4a
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diff --cc bin/X86MAC64/mrcSinogramFETcorrelationMap
index e66887e,e66887e..0175694
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diff --cc bin/X86MAC64/mrcSinogramFETnormalizedMap
index 63a267e,63a267e..9371903
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diff --cc bin/X86MAC64/mrcSinogramFETsmoothParameterMatching
index cfb5e9e,cfb5e9e..f2d961b
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diff --cc lib/X86MAC64/libEosObjects.a
index 1702076,96c6f0c..cc6c7be
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diff --cc lib/X86MAC64/libTclTk.a
index e4454b8,e4454b8..9ff6c21
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diff --cc lib/X86MAC64/libeosCuda.a
index abba5bd,abba5bd..4f439c1
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diff --cc lib/X86MAC64/libmapFile.a
index 8b277f0,8b277f0..48ebbe6
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diff --cc lib/X86MAC64/libmrcImage.a
index d874d07,94c1b1e..7cf38c3
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diff --cc lib/X86MAC64/libpdbFile.a
index 9abe354,9abe354..794bdf4
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diff --cc lib/X86MAC64/shared/eosCuda.sharedo
index 289ac6d,289ac6d..879f0b3
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diff --cc lib/X86MAC64/shared/lmrcImageFFT.sharedo
index 20b5ba7,20b5ba7..c0a5faf
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diff --cc lib/X86MAC64/shared/lmrcImageNegativeLaplacian.sharedo
index 0000000,0000000..4b00bad
new file mode 100644 (file)
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diff --cc lib/X86MAC64/shared/lmrcImagePrewitt.sharedo
index 0000000,0000000..17c070d
new file mode 100644 (file)
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diff --cc lib/X86MAC64/shared/lmrcImageSobel.sharedo
index 0a566a9,3feefae..7e2adbe
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diff --cc lib/X86MAC64/shared/mapFileRead.sharedo
index 0000000,0000000..f4583fb
new file mode 100644 (file)
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diff --cc src/Objects/DataExpress/Contour/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataExpress/Contour/src/X86MAC64/Makefile
--- 2/src/Objects/DataExpress/Contour/src/X86MAC64/Makefile
+++ b/src/Objects/DataExpress/Contour/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataExpress/TclTk/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataExpress/TclTk/src/X86MAC64/Makefile
--- 2/src/Objects/DataExpress/TclTk/src/X86MAC64/Makefile
+++ b/src/Objects/DataExpress/TclTk/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataExpress/TclTk/src/X86MAC64/libTclTk.a
index e4454b8,e4454b8..9ff6c21
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diff --cc src/Objects/DataExpress/TclTk/src/X86MAC64/libTclTk.debug.a
index 1844915,1844915..1ebfe62
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diff --cc src/Objects/DataExpress/alsa/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataExpress/alsa/src/X86MAC64/Makefile
--- 2/src/Objects/DataExpress/alsa/src/X86MAC64/Makefile
+++ b/src/Objects/DataExpress/alsa/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataExpress/avsFile/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataExpress/avsFile/src/X86MAC64/Makefile
--- 2/src/Objects/DataExpress/avsFile/src/X86MAC64/Makefile
+++ b/src/Objects/DataExpress/avsFile/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataExpress/eosRuby/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataExpress/eosRuby/src/X86MAC64/Makefile
--- 2/src/Objects/DataExpress/eosRuby/src/X86MAC64/Makefile
+++ b/src/Objects/DataExpress/eosRuby/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataExpress/gifFile/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataExpress/gifFile/src/X86MAC64/Makefile
--- 2/src/Objects/DataExpress/gifFile/src/X86MAC64/Makefile
+++ b/src/Objects/DataExpress/gifFile/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataExpress/openGL/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataExpress/openGL/src/X86MAC64/Makefile
--- 2/src/Objects/DataExpress/openGL/src/X86MAC64/Makefile
+++ b/src/Objects/DataExpress/openGL/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataExpress/psFile/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataExpress/psFile/src/X86MAC64/Makefile
--- 2/src/Objects/DataExpress/psFile/src/X86MAC64/Makefile
+++ b/src/Objects/DataExpress/psFile/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/DCDFile/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/DCDFile/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/DCDFile/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/DCDFile/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/IMAGIC/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/IMAGIC/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/IMAGIC/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/IMAGIC/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/MATH/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/MATH/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/MATH/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/MATH/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/bmpFile/src/X86MAC64/X86MAC64
index 0000000,0000000..e11da9f
new file mode 120000 (symlink)
--- /dev/null
--- /dev/null
+++ b/src/Objects/DataManip/bmpFile/src/X86MAC64/X86MAC64
@@@ -1,0 -1,0 +1,1 @@@
++../../../../../hostdepend/X86MAC64/src/Objects/DataManip/bmpFile/src/X86MAC64

diff --cc src/Objects/DataManip/ctfInfo/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/ctfInfo/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/ctfInfo/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/ctfInfo/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/dsn6File/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/dsn6File/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/dsn6File/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/dsn6File/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/emData/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/emData/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/emData/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/emData/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/khorosData/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/khorosData/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/khorosData/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/khorosData/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/largeIP/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/largeIP/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/largeIP/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/largeIP/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/llData/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/llData/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/llData/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/llData/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/ltlgData/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/ltlgData/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/ltlgData/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/ltlgData/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/mapFile/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/mapFile/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/mapFile/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/mapFile/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/mapFile/src/X86MAC64/libmapFile.a
index 8b277f0,8b277f0..48ebbe6
Binary files differ

diff --cc src/Objects/DataManip/mapFile/src/X86MAC64/libmapFile.debug.a
index 8b277f0,8b277f0..9307d85
Binary files differ

diff --cc src/Objects/DataManip/mapFile/src/X86MAC64/mapFileRead.sharedo
index 0000000,0000000..f4583fb
new file mode 100644 (file)
Binary files differ

diff --cc src/Objects/DataManip/mrcImage/src/X86MAC64/.Depend
index c20ea03,16e5b3f..13711f7
--- 1/src/Objects/DataManip/mrcImage/src/X86MAC64/.Depend
--- 2/src/Objects/DataManip/mrcImage/src/X86MAC64/.Depend
+++ b/src/Objects/DataManip/mrcImage/src/X86MAC64/.Depend
@@@ -72,6 -71,6 +72,7 @@@ X86MAC64/lmrcImageMorphology.o:lmrcImag
  X86MAC64/lmrcImageMove.o:lmrcImageMove.o
  X86MAC64/lmrcImageMultiCTFCompensation.o:lmrcImageMultiCTFCompensation.o
  X86MAC64/lmrcImageMultiplying.o:lmrcImageMultiplying.o
++X86MAC64/lmrcImageNegativeLaplacian.o:lmrcImageNegativeLaplacian.o
  X86MAC64/lmrcImageNormalizing.o:lmrcImageNormalizing.o
  X86MAC64/lmrcImageOneLineSimilarityCalc.o:lmrcImageOneLineSimilarityCalc.o
  X86MAC64/lmrcImageOpening.o:lmrcImageOpening.o
@@@ -79,7 -78,7 +80,7 @@@ X86MAC64/lmrcImagePad.o:lmrcImagePad.
  X86MAC64/lmrcImagePartImageSegmentation.o:lmrcImagePartImageSegmentation.o
  X86MAC64/lmrcImagePixelSummationOfProbabilityGetByImage.o:lmrcImagePixelSummationOfProbabilityGetByImage.o
  X86MAC64/lmrcImagePosterization.o:lmrcImagePosterization.o
--X86MAC64/lmrcImagePrevitt.o:lmrcImagePrevitt.o
++X86MAC64/lmrcImagePrewitt.o:lmrcImagePrewitt.o
  X86MAC64/lmrcImageProjection.o:lmrcImageProjection.o
  X86MAC64/lmrcImageProportionalDensityLevelSetByImage.o:lmrcImageProportionalDensityLevelSetByImage.o
  X86MAC64/lmrcImageROI2D.o:lmrcImageROI2D.o

diff --cc src/Objects/DataManip/mrcImage/src/X86MAC64/.Source
index 16a350b,cbb78c9..fb0efd0
--- 1/src/Objects/DataManip/mrcImage/src/X86MAC64/.Source
--- 2/src/Objects/DataManip/mrcImage/src/X86MAC64/.Source
+++ b/src/Objects/DataManip/mrcImage/src/X86MAC64/.Source
@@@ -73,6 -72,6 +73,7 @@@ lmrcImageMorphology.c 
  lmrcImageMove.c \
  lmrcImageMultiCTFCompensation.c \
  lmrcImageMultiplying.c \
++lmrcImageNegativeLaplacian.c \
  lmrcImageNormalizing.c \
  lmrcImageOneLineSimilarityCalc.c \
  lmrcImageOpening.c \
@@@ -80,7 -79,7 +81,7 @@@ lmrcImagePad.c 
  lmrcImagePartImageSegmentation.c \
  lmrcImagePixelSummationOfProbabilityGetByImage.c \
  lmrcImagePosterization.c \
--lmrcImagePrevitt.c \
++lmrcImagePrewitt.c \
  lmrcImageProjection.c \
  lmrcImageProportionalDensityLevelSetByImage.c \
  lmrcImageROI2D.c \
@@@ -236,6 -234,6 +237,7 @@@ lmrcImageMorphology.o 
  lmrcImageMove.o \
  lmrcImageMultiCTFCompensation.o \
  lmrcImageMultiplying.o \
++lmrcImageNegativeLaplacian.o \
  lmrcImageNormalizing.o \
  lmrcImageOneLineSimilarityCalc.o \
  lmrcImageOpening.o \
@@@ -243,7 -241,7 +245,7 @@@ lmrcImagePad.o 
  lmrcImagePartImageSegmentation.o \
  lmrcImagePixelSummationOfProbabilityGetByImage.o \
  lmrcImagePosterization.o \
--lmrcImagePrevitt.o \
++lmrcImagePrewitt.o \
  lmrcImageProjection.o \
  lmrcImageProportionalDensityLevelSetByImage.o \
  lmrcImageROI2D.o \
@@@ -399,6 -396,6 +401,7 @@@ lmrcImageMorphology.sharedo 
  lmrcImageMove.sharedo \
  lmrcImageMultiCTFCompensation.sharedo \
  lmrcImageMultiplying.sharedo \
++lmrcImageNegativeLaplacian.sharedo \
  lmrcImageNormalizing.sharedo \
  lmrcImageOneLineSimilarityCalc.sharedo \
  lmrcImageOpening.sharedo \
@@@ -406,7 -403,7 +409,7 @@@ lmrcImagePad.sharedo 
  lmrcImagePartImageSegmentation.sharedo \
  lmrcImagePixelSummationOfProbabilityGetByImage.sharedo \
  lmrcImagePosterization.sharedo \
--lmrcImagePrevitt.sharedo \
++lmrcImagePrewitt.sharedo \
  lmrcImageProjection.sharedo \
  lmrcImageProportionalDensityLevelSetByImage.sharedo \
  lmrcImageROI2D.sharedo \
@@@ -562,6 -558,6 +565,7 @@@ X86MAC64/lmrcImageMorphology.o 
  X86MAC64/lmrcImageMove.o \
  X86MAC64/lmrcImageMultiCTFCompensation.o \
  X86MAC64/lmrcImageMultiplying.o \
++X86MAC64/lmrcImageNegativeLaplacian.o \
  X86MAC64/lmrcImageNormalizing.o \
  X86MAC64/lmrcImageOneLineSimilarityCalc.o \
  X86MAC64/lmrcImageOpening.o \
@@@ -569,7 -565,7 +573,7 @@@ X86MAC64/lmrcImagePad.o 
  X86MAC64/lmrcImagePartImageSegmentation.o \
  X86MAC64/lmrcImagePixelSummationOfProbabilityGetByImage.o \
  X86MAC64/lmrcImagePosterization.o \
--X86MAC64/lmrcImagePrevitt.o \
++X86MAC64/lmrcImagePrewitt.o \
  X86MAC64/lmrcImageProjection.o \
  X86MAC64/lmrcImageProportionalDensityLevelSetByImage.o \
  X86MAC64/lmrcImageROI2D.o \
@@@ -725,6 -720,6 +729,7 @@@ X86MAC64/lmrcImageMorphology.sharedo 
  X86MAC64/lmrcImageMove.sharedo \
  X86MAC64/lmrcImageMultiCTFCompensation.sharedo \
  X86MAC64/lmrcImageMultiplying.sharedo \
++X86MAC64/lmrcImageNegativeLaplacian.sharedo \
  X86MAC64/lmrcImageNormalizing.sharedo \
  X86MAC64/lmrcImageOneLineSimilarityCalc.sharedo \
  X86MAC64/lmrcImageOpening.sharedo \
@@@ -732,7 -727,7 +737,7 @@@ X86MAC64/lmrcImagePad.sharedo 
  X86MAC64/lmrcImagePartImageSegmentation.sharedo \
  X86MAC64/lmrcImagePixelSummationOfProbabilityGetByImage.sharedo \
  X86MAC64/lmrcImagePosterization.sharedo \
--X86MAC64/lmrcImagePrevitt.sharedo \
++X86MAC64/lmrcImagePrewitt.sharedo \
  X86MAC64/lmrcImageProjection.sharedo \
  X86MAC64/lmrcImageProportionalDensityLevelSetByImage.sharedo \
  X86MAC64/lmrcImageROI2D.sharedo \
@@@ -888,6 -882,6 +893,7 @@@ lmrcImageMorphology.debugo 
  lmrcImageMove.debugo \
  lmrcImageMultiCTFCompensation.debugo \
  lmrcImageMultiplying.debugo \
++lmrcImageNegativeLaplacian.debugo \
  lmrcImageNormalizing.debugo \
  lmrcImageOneLineSimilarityCalc.debugo \
  lmrcImageOpening.debugo \
@@@ -895,7 -889,7 +901,7 @@@ lmrcImagePad.debugo 
  lmrcImagePartImageSegmentation.debugo \
  lmrcImagePixelSummationOfProbabilityGetByImage.debugo \
  lmrcImagePosterization.debugo \
--lmrcImagePrevitt.debugo \
++lmrcImagePrewitt.debugo \
  lmrcImageProjection.debugo \
  lmrcImageProportionalDensityLevelSetByImage.debugo \
  lmrcImageROI2D.debugo \
@@@ -1048,6 -1041,6 +1054,7 @@@ X86MAC64/lmrcImageMorphology.debugo 
  X86MAC64/lmrcImageMove.debugo \
  X86MAC64/lmrcImageMultiCTFCompensation.debugo \
  X86MAC64/lmrcImageMultiplying.debugo \
++X86MAC64/lmrcImageNegativeLaplacian.debugo \
  X86MAC64/lmrcImageNormalizing.debugo \
  X86MAC64/lmrcImageOneLineSimilarityCalc.debugo \
  X86MAC64/lmrcImageOpening.debugo \
@@@ -1055,7 -1048,7 +1062,7 @@@ X86MAC64/lmrcImagePad.debugo 
  X86MAC64/lmrcImagePartImageSegmentation.debugo \
  X86MAC64/lmrcImagePixelSummationOfProbabilityGetByImage.debugo \
  X86MAC64/lmrcImagePosterization.debugo \
--X86MAC64/lmrcImagePrevitt.debugo \
++X86MAC64/lmrcImagePrewitt.debugo \
  X86MAC64/lmrcImageProjection.debugo \
  X86MAC64/lmrcImageProportionalDensityLevelSetByImage.debugo \
  X86MAC64/lmrcImageROI2D.debugo \
@@@ -1211,6 -1203,6 +1218,7 @@@ lmrcImageMorphology.cudagdb.o 
  lmrcImageMove.cudagdb.o \
  lmrcImageMultiCTFCompensation.cudagdb.o \
  lmrcImageMultiplying.cudagdb.o \
++lmrcImageNegativeLaplacian.cudagdb.o \
  lmrcImageNormalizing.cudagdb.o \
  lmrcImageOneLineSimilarityCalc.cudagdb.o \
  lmrcImageOpening.cudagdb.o \
@@@ -1218,7 -1210,7 +1226,7 @@@ lmrcImagePad.cudagdb.o 
  lmrcImagePartImageSegmentation.cudagdb.o \
  lmrcImagePixelSummationOfProbabilityGetByImage.cudagdb.o \
  lmrcImagePosterization.cudagdb.o \
--lmrcImagePrevitt.cudagdb.o \
++lmrcImagePrewitt.cudagdb.o \
  lmrcImageProjection.cudagdb.o \
  lmrcImageProportionalDensityLevelSetByImage.cudagdb.o \
  lmrcImageROI2D.cudagdb.o \
@@@ -1374,6 -1365,6 +1382,7 @@@ X86MAC64/lmrcImageMorphology.cudagdb.o 
  X86MAC64/lmrcImageMove.cudagdb.o \
  X86MAC64/lmrcImageMultiCTFCompensation.cudagdb.o \
  X86MAC64/lmrcImageMultiplying.cudagdb.o \
++X86MAC64/lmrcImageNegativeLaplacian.cudagdb.o \
  X86MAC64/lmrcImageNormalizing.cudagdb.o \
  X86MAC64/lmrcImageOneLineSimilarityCalc.cudagdb.o \
  X86MAC64/lmrcImageOpening.cudagdb.o \
@@@ -1381,7 -1372,7 +1390,7 @@@ X86MAC64/lmrcImagePad.cudagdb.o 
  X86MAC64/lmrcImagePartImageSegmentation.cudagdb.o \
  X86MAC64/lmrcImagePixelSummationOfProbabilityGetByImage.cudagdb.o \
  X86MAC64/lmrcImagePosterization.cudagdb.o \
--X86MAC64/lmrcImagePrevitt.cudagdb.o \
++X86MAC64/lmrcImagePrewitt.cudagdb.o \
  X86MAC64/lmrcImageProjection.cudagdb.o \
  X86MAC64/lmrcImageProportionalDensityLevelSetByImage.cudagdb.o \
  X86MAC64/lmrcImageROI2D.cudagdb.o \

diff --cc src/Objects/DataManip/mrcImage/src/X86MAC64/libmrcImage.a
index d874d07,94c1b1e..7cf38c3
Binary files differ

diff --cc src/Objects/DataManip/mrcImage/src/X86MAC64/libmrcImage.debug.a
index 71442ee,8caad0c..ed8cadc
Binary files differ

diff --cc src/Objects/DataManip/mrcImage/src/X86MAC64/lmrcImageFFT.sharedo
index 20b5ba7,20b5ba7..c0a5faf
Binary files differ

diff --cc src/Objects/DataManip/mrcImage/src/X86MAC64/lmrcImageNegativeLaplacian.c
index 0000000,0000000..1b7e8c9
new file mode 120000 (symlink)
--- /dev/null
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86MAC64/lmrcImageNegativeLaplacian.c
@@@ -1,0 -1,0 +1,1 @@@
++../lmrcImageNegativeLaplacian.c

diff --cc src/Objects/DataManip/mrcImage/src/X86MAC64/lmrcImageNegativeLaplacian.sharedo
index 0000000,0000000..4b00bad
new file mode 100644 (file)
Binary files differ

diff --cc src/Objects/DataManip/mrcImage/src/X86MAC64/lmrcImagePrewitt.c
index 0000000,0000000..e0b132a
new file mode 120000 (symlink)
--- /dev/null
--- /dev/null
+++ b/src/Objects/DataManip/mrcImage/src/X86MAC64/lmrcImagePrewitt.c
@@@ -1,0 -1,0 +1,1 @@@
++../lmrcImagePrewitt.c

diff --cc src/Objects/DataManip/mrcImage/src/X86MAC64/lmrcImagePrewitt.sharedo
index 0000000,0000000..17c070d
new file mode 100644 (file)
Binary files differ

diff --cc src/Objects/DataManip/mrcImage/src/X86MAC64/lmrcImageSobel.sharedo
index 0a566a9,3feefae..7e2adbe
Binary files differ

diff --cc src/Objects/DataManip/pdbFile/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/pdbFile/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/pdbFile/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/pdbFile/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/pdbFile/src/X86MAC64/libpdbFile.a
index 9abe354,9abe354..794bdf4
Binary files differ

diff --cc src/Objects/DataManip/pdbFile/src/X86MAC64/libpdbFile.debug.a
index d134585,d134585..fb71a11
Binary files differ

diff --cc src/Objects/DataManip/simulation/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/simulation/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/simulation/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/simulation/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/tgaFile/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/tgaFile/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/tgaFile/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/tgaFile/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/DataManip/transform/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/DataManip/transform/src/X86MAC64/Makefile
--- 2/src/Objects/DataManip/transform/src/X86MAC64/Makefile
+++ b/src/Objects/DataManip/transform/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/AI/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/AI/src/X86MAC64/Makefile
--- 2/src/Objects/General/AI/src/X86MAC64/Makefile
+++ b/src/Objects/General/AI/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/Array/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/Array/src/X86MAC64/Makefile
--- 2/src/Objects/General/Array/src/X86MAC64/Makefile
+++ b/src/Objects/General/Array/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/Cluster/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/Cluster/src/X86MAC64/Makefile
--- 2/src/Objects/General/Cluster/src/X86MAC64/Makefile
+++ b/src/Objects/General/Cluster/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/Crystal/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/Crystal/src/X86MAC64/Makefile
--- 2/src/Objects/General/Crystal/src/X86MAC64/Makefile
+++ b/src/Objects/General/Crystal/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/DataBase/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/DataBase/src/X86MAC64/Makefile
--- 2/src/Objects/General/DataBase/src/X86MAC64/Makefile
+++ b/src/Objects/General/DataBase/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/File/src/X86MAC64/Makefile
index e9a492d,e9a492d..bdf6a4a
--- 1/src/Objects/General/File/src/X86MAC64/Makefile
--- 2/src/Objects/General/File/src/X86MAC64/Makefile
+++ b/src/Objects/General/File/src/X86MAC64/Makefile
@@@ -19,7 -19,7 +19,7 @@@ $(LIBNAME): $(OBJ
        $(AR) rs $(LIBNAME) $(OBJ)
  
  $(SHAREDLIB): $(SHAREDOBJ)
--      COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
++      @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
        COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)

diff --cc src/Objects/General/Map2D/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/Map2D/src/X86MAC64/Makefile
--- 2/src/Objects/General/Map2D/src/X86MAC64/Makefile
+++ b/src/Objects/General/Map2D/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/Matrix3D/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/Matrix3D/src/X86MAC64/Makefile
--- 2/src/Objects/General/Matrix3D/src/X86MAC64/Makefile
+++ b/src/Objects/General/Matrix3D/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/Memory/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/Memory/src/X86MAC64/Makefile
--- 2/src/Objects/General/Memory/src/X86MAC64/Makefile
+++ b/src/Objects/General/Memory/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/PVM/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/PVM/src/X86MAC64/Makefile
--- 2/src/Objects/General/PVM/src/X86MAC64/Makefile
+++ b/src/Objects/General/PVM/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/Random/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/Random/src/X86MAC64/Makefile
--- 2/src/Objects/General/Random/src/X86MAC64/Makefile
+++ b/src/Objects/General/Random/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/Raw/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/Raw/src/X86MAC64/Makefile
--- 2/src/Objects/General/Raw/src/X86MAC64/Makefile
+++ b/src/Objects/General/Raw/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/Socket/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/Socket/src/X86MAC64/Makefile
--- 2/src/Objects/General/Socket/src/X86MAC64/Makefile
+++ b/src/Objects/General/Socket/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/SpecialNumber/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/SpecialNumber/src/X86MAC64/Makefile
--- 2/src/Objects/General/SpecialNumber/src/X86MAC64/Makefile
+++ b/src/Objects/General/SpecialNumber/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/String/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/String/src/X86MAC64/Makefile
--- 2/src/Objects/General/String/src/X86MAC64/Makefile
+++ b/src/Objects/General/String/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/Vector/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/Vector/src/X86MAC64/Makefile
--- 2/src/Objects/General/Vector/src/X86MAC64/Makefile
+++ b/src/Objects/General/Vector/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/X86MAC64/Makefile
--- 2/src/Objects/General/X86MAC64/Makefile
+++ b/src/Objects/General/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/dummy/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/dummy/src/X86MAC64/Makefile
--- 2/src/Objects/General/dummy/src/X86MAC64/Makefile
+++ b/src/Objects/General/dummy/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/eosFunc/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/eosFunc/src/X86MAC64/Makefile
--- 2/src/Objects/General/eosFunc/src/X86MAC64/Makefile
+++ b/src/Objects/General/eosFunc/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/eosList/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/eosList/src/X86MAC64/Makefile
--- 2/src/Objects/General/eosList/src/X86MAC64/Makefile
+++ b/src/Objects/General/eosList/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/eosPThread/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/eosPThread/src/X86MAC64/Makefile
--- 2/src/Objects/General/eosPThread/src/X86MAC64/Makefile
+++ b/src/Objects/General/eosPThread/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/eosPoint/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/eosPoint/src/X86MAC64/Makefile
--- 2/src/Objects/General/eosPoint/src/X86MAC64/Makefile
+++ b/src/Objects/General/eosPoint/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/General/genUtil/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/General/genUtil/src/X86MAC64/Makefile
--- 2/src/Objects/General/genUtil/src/X86MAC64/Makefile
+++ b/src/Objects/General/genUtil/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Objects/MachineManip/hf2000/src/X86MAC64/Makefile
index a429553,a429553..bdf6a4a
--- 1/src/Objects/MachineManip/hf2000/src/X86MAC64/Makefile
--- 2/src/Objects/MachineManip/hf2000/src/X86MAC64/Makefile
+++ b/src/Objects/MachineManip/hf2000/src/X86MAC64/Makefile
@@@ -20,7 -20,7 +20,7 @@@ $(LIBNAME): $(OBJ
  
  $(SHAREDLIB): $(SHAREDOBJ)
        @COMPILEDOBJ=`ls $(SHAREDOBJ)` ; echo "#### Compiled Objects"; echo $${COMPILEDOBJ};  echo "################"; \
--      $(SHARED) $(SHAREDLIB) $${COMPILEDOBJ} 
++      COMMAND="$(SHARED) $(SHAREDLIB) $${COMPILEDOBJ}" ; echo $${COMMAND}; $${COMMAND} 
  
  debug: $(LIBNAMEDEBUG) $(LIBNAMECUDAGDB)
  

diff --cc src/Tools/Integration/Display2/src/X86MAC64/.Depend
index 2446e19,2446e19..20a041f
--- 1/src/Tools/Integration/Display2/src/X86MAC64/.Depend
--- 2/src/Tools/Integration/Display2/src/X86MAC64/.Depend
+++ b/src/Tools/Integration/Display2/src/X86MAC64/.Depend
@@@ -40,8 -40,8 +40,9 @@@ Display2.o: Display2.c /usr/include/std
    /Users/tacyas/Eos/util/X86MAC64/include/tclPlatDecls.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/util/X86MAC64/include/tk.h /usr/include/X11/Xlib.h \
    /usr/include/sys/types.h /usr/include/sys/_types/_blkcnt_t.h \
    /usr/include/sys/_types/_blksize_t.h /usr/include/sys/_types/_gid_t.h \

diff --cc src/Tools/Integration/Display2/src/X86MAC64/Display2
index ed492b1,ed492b1..556781a
Binary files differ

diff --cc src/Tools/Integration/StereoDisplay/src/X86MAC64/.Depend
index 0000000,0000000..ea218a9
new file mode 100644 (file)
--- /dev/null
--- /dev/null
+++ b/src/Tools/Integration/StereoDisplay/src/X86MAC64/.Depend
@@@ -1,0 -1,0 +1,205 @@@
++StereoDisplay.o: StereoDisplay.c /usr/include/stdio.h \
++  /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
++  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
++  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
++  /usr/include/sys/_types.h /usr/include/machine/_types.h \
++  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
++  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
++  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
++  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
++  /usr/include/stdlib.h /usr/include/sys/wait.h \
++  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
++  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
++  /usr/include/machine/signal.h /usr/include/i386/signal.h \
++  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
++  /usr/include/mach/i386/_structs.h \
++  /usr/include/sys/_types/_sigaltstack.h \
++  /usr/include/sys/_types/_ucontext.h \
++  /usr/include/sys/_types/_pthread_attr_t.h \
++  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
++  /usr/include/sys/resource.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
++  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
++  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
++  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
++  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
++  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
++  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
++  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
++  /usr/include/machine/endian.h /usr/include/i386/endian.h \
++  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
++  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
++  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
++  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
++  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
++  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
++  /Users/tacyas/Eos/include/string.h /usr/include/math.h \
++  /Users/tacyas/Eos/util/X86MAC64/include/GL/gl.h \
++  /System/Library/Frameworks/OpenGL.framework/Headers/gltypes.h \
++  /System/Library/Frameworks/OpenGL.framework/Headers/glext.h \
++  /Users/tacyas/Eos/util/X86MAC64/include/GL/glu.h \
++  /System/Library/Frameworks/OpenGL.framework/Headers/OpenGLAvailability.h \
++  /Users/tacyas/Eos/util/X86MAC64/include/GL/glut.h ../inc/config.h \
++  ../inc/../inc/StereoDisplay.h /Users/tacyas/Eos/include/genUtil.h \
++  /Users/tacyas/Eos/include/Memory.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
++  /usr/include/limits.h /usr/include/machine/limits.h \
++  /usr/include/i386/limits.h /usr/include/i386/_limits.h \
++  /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/File.h \
++  /Users/tacyas/Eos/include/tgaFile.h
++argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
++  /usr/include/sys/_symbol_aliasing.h \
++  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
++  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
++  /usr/include/sys/_types.h /usr/include/machine/_types.h \
++  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
++  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
++  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
++  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
++  /usr/include/stdlib.h /usr/include/sys/wait.h \
++  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
++  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
++  /usr/include/machine/signal.h /usr/include/i386/signal.h \
++  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
++  /usr/include/mach/i386/_structs.h \
++  /usr/include/sys/_types/_sigaltstack.h \
++  /usr/include/sys/_types/_ucontext.h \
++  /usr/include/sys/_types/_pthread_attr_t.h \
++  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
++  /usr/include/sys/resource.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
++  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
++  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
++  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
++  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
++  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
++  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
++  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
++  /usr/include/machine/endian.h /usr/include/i386/endian.h \
++  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
++  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
++  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
++  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
++  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
++  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
++  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
++  ../inc/../inc/StereoDisplay.h /Users/tacyas/Eos/include/genUtil.h \
++  /Users/tacyas/Eos/include/File.h /Users/tacyas/Eos/include/Memory.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
++  /usr/include/limits.h /usr/include/machine/limits.h \
++  /usr/include/i386/limits.h /usr/include/i386/_limits.h \
++  /usr/include/sys/syslimits.h
++init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
++  /usr/include/sys/_symbol_aliasing.h \
++  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
++  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
++  /usr/include/sys/_types.h /usr/include/machine/_types.h \
++  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
++  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
++  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
++  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
++  /usr/include/stdlib.h /usr/include/sys/wait.h \
++  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
++  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
++  /usr/include/machine/signal.h /usr/include/i386/signal.h \
++  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
++  /usr/include/mach/i386/_structs.h \
++  /usr/include/sys/_types/_sigaltstack.h \
++  /usr/include/sys/_types/_ucontext.h \
++  /usr/include/sys/_types/_pthread_attr_t.h \
++  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
++  /usr/include/sys/resource.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
++  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
++  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
++  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
++  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
++  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
++  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
++  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
++  /usr/include/machine/endian.h /usr/include/i386/endian.h \
++  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
++  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
++  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
++  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
++  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
++  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
++  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
++  ../inc/../inc/StereoDisplay.h /Users/tacyas/Eos/include/genUtil.h \
++  /Users/tacyas/Eos/include/File.h /Users/tacyas/Eos/include/Memory.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
++  /usr/include/limits.h /usr/include/machine/limits.h \
++  /usr/include/i386/limits.h /usr/include/i386/_limits.h \
++  /usr/include/sys/syslimits.h
++usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
++  /usr/include/sys/_symbol_aliasing.h \
++  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
++  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
++  /usr/include/sys/_types.h /usr/include/machine/_types.h \
++  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
++  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
++  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
++  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
++  /usr/include/stdlib.h /usr/include/sys/wait.h \
++  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
++  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
++  /usr/include/machine/signal.h /usr/include/i386/signal.h \
++  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
++  /usr/include/mach/i386/_structs.h \
++  /usr/include/sys/_types/_sigaltstack.h \
++  /usr/include/sys/_types/_ucontext.h \
++  /usr/include/sys/_types/_pthread_attr_t.h \
++  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
++  /usr/include/sys/resource.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
++  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
++  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
++  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
++  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
++  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
++  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
++  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
++  /usr/include/machine/endian.h /usr/include/i386/endian.h \
++  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
++  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
++  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
++  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
++  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
++  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
++  ../inc/config.h ../inc/../inc/StereoDisplay.h
++util.o: util.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
++  /usr/include/sys/_symbol_aliasing.h \
++  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
++  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
++  /usr/include/sys/_types.h /usr/include/machine/_types.h \
++  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
++  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
++  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
++  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
++  /usr/include/stdlib.h /usr/include/sys/wait.h \
++  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
++  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
++  /usr/include/machine/signal.h /usr/include/i386/signal.h \
++  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
++  /usr/include/mach/i386/_structs.h \
++  /usr/include/sys/_types/_sigaltstack.h \
++  /usr/include/sys/_types/_ucontext.h \
++  /usr/include/sys/_types/_pthread_attr_t.h \
++  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
++  /usr/include/sys/resource.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
++  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
++  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
++  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
++  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
++  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
++  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
++  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
++  /usr/include/machine/endian.h /usr/include/i386/endian.h \
++  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
++  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
++  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
++  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
++  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
++  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
++  ../inc/config.h ../inc/../inc/StereoDisplay.h

diff --cc src/Tools/Integration/ctfDisplay/src/X86MAC64/.Depend
index 821e2b2,821e2b2..2b8f957
--- 1/src/Tools/Integration/ctfDisplay/src/X86MAC64/.Depend
--- 2/src/Tools/Integration/ctfDisplay/src/X86MAC64/.Depend
+++ b/src/Tools/Integration/ctfDisplay/src/X86MAC64/.Depend
@@@ -78,8 -78,8 +78,9 @@@ ctfDisplay.o: ctfDisplay.c /usr/include
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/ctfDisplay.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/util/X86MAC64/include/tcl.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdarg.h \
    /Users/tacyas/Eos/util/X86MAC64/include/tclDecls.h \

diff --cc src/Tools/Integration/ctfDisplay/src/X86MAC64/ctfDisplay
index ffe0fcd,ffe0fcd..f5f4032
Binary files differ

diff --cc src/Tools/Integration/imagesView/src/X86MAC64/.Depend
index 606d68a,606d68a..ea40a0b
--- 1/src/Tools/Integration/imagesView/src/X86MAC64/.Depend
--- 2/src/Tools/Integration/imagesView/src/X86MAC64/.Depend
+++ b/src/Tools/Integration/imagesView/src/X86MAC64/.Depend
@@@ -82,8 -82,8 +82,9 @@@ imagesView.o: imagesView.c /usr/include
    /Users/tacyas/Eos/util/X86MAC64/include/tclPlatDecls.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/util/X86MAC64/include/tk.h /usr/include/X11/Xlib.h \
    /usr/include/sys/types.h /usr/include/sys/_types/_blkcnt_t.h \
    /usr/include/sys/_types/_blksize_t.h /usr/include/sys/_types/_gid_t.h \

diff --cc src/Tools/Integration/imagesView/src/X86MAC64/imagesView
index 1d57957,1d57957..93d7a87
Binary files differ

diff --cc src/Tools/bmpFile/bmpFileInfo/src/X86MAC64/.Depend
index d772964,d772964..ee26bfc
--- 1/src/Tools/bmpFile/bmpFileInfo/src/X86MAC64/.Depend
--- 2/src/Tools/bmpFile/bmpFileInfo/src/X86MAC64/.Depend
+++ b/src/Tools/bmpFile/bmpFileInfo/src/X86MAC64/.Depend
@@@ -79,8 -79,8 +79,9 @@@ bmpFileInfo.o: bmpFileInfo.c /usr/inclu
    ../inc/../inc/bmpFileInfo.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/bmpFile.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/bmpFile/bmpFileInfo/src/X86MAC64/bmpFileInfo
index 96c1f32,96c1f32..62d03fd
Binary files differ

diff --cc src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86MAC64/.Depend
index 8f6803c,8f6803c..554aa1e
--- 1/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86MAC64/.Depend
--- 2/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86MAC64/.Depend
+++ b/src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/X86MAC64/.Depend
@@@ -82,8 -82,8 +82,8 @@@ ctfDeterminationFromPhaseComparison.o: 
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86MAC64/.Depend
index 0cb81ed,0cb81ed..d12ec0e
--- 1/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86MAC64/.Depend
--- 2/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86MAC64/.Depend
+++ b/src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/X86MAC64/.Depend
@@@ -84,8 -84,8 +84,9 @@@ ctfDeterminationFromThonRing.o: ctfDete
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/ctfInfo/ctfDetermine/src/X86MAC64/.Depend
index fc092f0,fc092f0..8f24ac8
--- 1/src/Tools/ctfInfo/ctfDetermine/src/X86MAC64/.Depend
--- 2/src/Tools/ctfInfo/ctfDetermine/src/X86MAC64/.Depend
+++ b/src/Tools/ctfInfo/ctfDetermine/src/X86MAC64/.Depend
@@@ -79,8 -79,8 +79,9 @@@ ctfDetermine.o: ctfDetermine.c /usr/inc
    ../inc/../inc/ctfDetermine.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lctfDetermination.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/powerspectraTangentLine.h \
    /Users/tacyas/Eos/include/lmrcFSInfoScatteringAngularDistributionAverageSection.h \
    /Users/tacyas/Eos/include/lastigmatismDetection.h \

diff --cc src/Tools/ctfInfo/ctfFunction/src/X86MAC64/.Depend
index cbff994,cbff994..a51f406
--- 1/src/Tools/ctfInfo/ctfFunction/src/X86MAC64/.Depend
--- 2/src/Tools/ctfInfo/ctfFunction/src/X86MAC64/.Depend
+++ b/src/Tools/ctfInfo/ctfFunction/src/X86MAC64/.Depend
@@@ -82,8 -82,8 +82,9 @@@ ctfFunction.o: ctfFunction.c /usr/inclu
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/ctfInfo/ctfWeightMapCreation/src/X86MAC64/.Depend
index 2d60b87,2d60b87..0be3aef
--- 1/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86MAC64/.Depend
--- 2/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86MAC64/.Depend
+++ b/src/Tools/ctfInfo/ctfWeightMapCreation/src/X86MAC64/.Depend
@@@ -80,8 -80,8 +80,9 @@@ ctfWeightMapCreation.o: ctfWeightMapCre
    ../inc/../inc/ctfWeightMapCreation.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86MAC64/.Depend
index de8d2a6,de8d2a6..b966520
--- 1/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86MAC64/.Depend
--- 2/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86MAC64/.Depend
+++ b/src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/X86MAC64/.Depend
@@@ -82,8 -82,8 +82,8 @@@ defocusDeterminationFromThonRing.o: def
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
    /Users/tacyas/Eos/include/lllExtractdYEstimate.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/ctfInfo/tiltInfoDetermine/src/X86MAC64/.Depend
index 5554fa4,5554fa4..cf39e73
--- 1/src/Tools/ctfInfo/tiltInfoDetermine/src/X86MAC64/.Depend
--- 2/src/Tools/ctfInfo/tiltInfoDetermine/src/X86MAC64/.Depend
+++ b/src/Tools/ctfInfo/tiltInfoDetermine/src/X86MAC64/.Depend
@@@ -129,8 -129,8 +129,8 @@@ tiltInfoDetermine.o: tiltInfoDetermine.
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
    /Users/tacyas/Eos/include/File.h \
    /Users/tacyas/Eos/include/lmrcImageROI2D.h \
    /Users/tacyas/Eos/include/lmrcImageMontage.h \

diff --cc src/Tools/filter/array2mrc/src/X86MAC64/.Depend
index f2bf3d4,f2bf3d4..ee8a7ce
--- 1/src/Tools/filter/array2mrc/src/X86MAC64/.Depend
--- 2/src/Tools/filter/array2mrc/src/X86MAC64/.Depend
+++ b/src/Tools/filter/array2mrc/src/X86MAC64/.Depend
@@@ -78,8 -78,8 +78,8 @@@ array2mrc.o: array2mrc.c /usr/include/s
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/array2mrc.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/Array.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
    /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/larray2mrc.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/filter/bin2mrc/src/X86MAC64/.Depend
index b3417d2,b3417d2..ad3058b
--- 1/src/Tools/filter/bin2mrc/src/X86MAC64/.Depend
--- 2/src/Tools/filter/bin2mrc/src/X86MAC64/.Depend
+++ b/src/Tools/filter/bin2mrc/src/X86MAC64/.Depend
@@@ -82,8 -82,8 +82,9 @@@ bin2mrc.o: bin2mrc.c /usr/include/stdio
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/filter/bmp2mrc/src/X86MAC64/.Depend
index eefde93,eefde93..5db89b4
--- 1/src/Tools/filter/bmp2mrc/src/X86MAC64/.Depend
--- 2/src/Tools/filter/bmp2mrc/src/X86MAC64/.Depend
+++ b/src/Tools/filter/bmp2mrc/src/X86MAC64/.Depend
@@@ -79,8 -79,8 +79,9 @@@ bmp2mrc.o: bmp2mrc.c /usr/include/stdio
    ../inc/../inc/bmp2mrc.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/bmpFile.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/filter/emData2mrc/src/X86MAC64/.Depend
index 89be714,89be714..6a95603
--- 1/src/Tools/filter/emData2mrc/src/X86MAC64/.Depend
--- 2/src/Tools/filter/emData2mrc/src/X86MAC64/.Depend
+++ b/src/Tools/filter/emData2mrc/src/X86MAC64/.Depend
@@@ -78,9 -78,9 +78,9 @@@ emData2mrc.o: emData2mrc.c /usr/include
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/emData2mrc.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/emData.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/emData.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/filter/imodst2mrc/src/X86MAC64/.Depend
index 6722aac,6722aac..f37e622
--- 1/src/Tools/filter/imodst2mrc/src/X86MAC64/.Depend
--- 2/src/Tools/filter/imodst2mrc/src/X86MAC64/.Depend
+++ b/src/Tools/filter/imodst2mrc/src/X86MAC64/.Depend
@@@ -78,8 -78,8 +78,9 @@@ imodst2mrc.o: imodst2mrc.c /usr/include
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/imodst2mrc.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/filter/ip2mrc/src/X86MAC64/.Depend
index c45e219,c45e219..7a81718
--- 1/src/Tools/filter/ip2mrc/src/X86MAC64/.Depend
--- 2/src/Tools/filter/ip2mrc/src/X86MAC64/.Depend
+++ b/src/Tools/filter/ip2mrc/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ ip2mrc.o: ip2mrc.c /usr/include/stdio.
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/filter/moi2mrc/src/X86MAC64/.Depend
index e6f1fb0,e6f1fb0..faa11be
--- 1/src/Tools/filter/moi2mrc/src/X86MAC64/.Depend
--- 2/src/Tools/filter/moi2mrc/src/X86MAC64/.Depend
+++ b/src/Tools/filter/moi2mrc/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ moi2mrc.o: moi2mrc.c /usr/include/stdio
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/File.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/filter/mrc2fld/src/X86MAC64/.Depend
index 43b4c8b,43b4c8b..ee82722
--- 1/src/Tools/filter/mrc2fld/src/X86MAC64/.Depend
--- 2/src/Tools/filter/mrc2fld/src/X86MAC64/.Depend
+++ b/src/Tools/filter/mrc2fld/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrc2fld.o: mrc2fld.c /Users/tacyas/Eos/
    /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
    ../inc/config.h ../inc/../inc/mrc2fld.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/avsFile.h \
    /Users/tacyas/Eos/include/lmrcImageModeChange.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/filter/mrc2gif/src/X86MAC64/.Depend
index faff841,faff841..6a3ad3f
--- 1/src/Tools/filter/mrc2gif/src/X86MAC64/.Depend
--- 2/src/Tools/filter/mrc2gif/src/X86MAC64/.Depend
+++ b/src/Tools/filter/mrc2gif/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrc2gif.o: mrc2gif.c /usr/include/stdio
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrc2gif.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/gifFile.h \
    /Users/tacyas/Eos/include/gif_lib.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/filter/mrc2lattice/src/X86MAC64/.Depend
index cd357ff,cd357ff..e9f5e12
--- 1/src/Tools/filter/mrc2lattice/src/X86MAC64/.Depend
--- 2/src/Tools/filter/mrc2lattice/src/X86MAC64/.Depend
+++ b/src/Tools/filter/mrc2lattice/src/X86MAC64/.Depend
@@@ -120,9 -120,9 +120,9 @@@ mrc2lattice.o: mrc2lattice.c /usr/inclu
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrc2lattice.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \

diff --cc src/Tools/filter/mrc2mrc/src/X86MAC64/.Depend
index de59cde,de59cde..b5ba3b3
--- 1/src/Tools/filter/mrc2mrc/src/X86MAC64/.Depend
--- 2/src/Tools/filter/mrc2mrc/src/X86MAC64/.Depend
+++ b/src/Tools/filter/mrc2mrc/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrc2mrc.o: mrc2mrc.c /usr/include/stdio
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrc2mrc.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/filter/mrc2pov/src/X86MAC64/.Depend
index f37e7af,f37e7af..b25597e
--- 1/src/Tools/filter/mrc2pov/src/X86MAC64/.Depend
--- 2/src/Tools/filter/mrc2pov/src/X86MAC64/.Depend
+++ b/src/Tools/filter/mrc2pov/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrc2pov.o: mrc2pov.c /usr/include/stdio
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrc2pov.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/File.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/filter/mrc2tiff/src/X86MAC64/.Depend
index 535f66b,535f66b..20fc743
--- 1/src/Tools/filter/mrc2tiff/src/X86MAC64/.Depend
--- 2/src/Tools/filter/mrc2tiff/src/X86MAC64/.Depend
+++ b/src/Tools/filter/mrc2tiff/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrc2tiff.o: mrc2tiff.c /usr/include/std
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/util/X86MAC64/include/tiffio.h \
    /Users/tacyas/Eos/util/X86MAC64/include/tiff.h \
    /Users/tacyas/Eos/util/X86MAC64/include/tiffconf.h \

diff --cc src/Tools/filter/tiff2mrc/src/X86MAC64/.Depend
index 097e264,097e264..ca3b622
--- 1/src/Tools/filter/tiff2mrc/src/X86MAC64/.Depend
--- 2/src/Tools/filter/tiff2mrc/src/X86MAC64/.Depend
+++ b/src/Tools/filter/tiff2mrc/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ tiff2mrc.o: tiff2mrc.c /usr/include/std
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/util/X86MAC64/include/tiff.h \
    /Users/tacyas/Eos/util/X86MAC64/include/tiffconf.h \
    /Users/tacyas/Eos/util/X86MAC64/include/tiffio.h \

diff --cc src/Tools/llData/llDataNEstimation/src/X86MAC64/.Depend
index 0c12709,0c12709..5cdb7bc
--- 1/src/Tools/llData/llDataNEstimation/src/X86MAC64/.Depend
--- 2/src/Tools/llData/llDataNEstimation/src/X86MAC64/.Depend
+++ b/src/Tools/llData/llDataNEstimation/src/X86MAC64/.Depend
@@@ -120,9 -120,9 +120,9 @@@ llDataNEstimation.o: llDataNEstimation.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/llDataNEstimation.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/llData.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/llData.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/llData/llDataPrint/src/X86MAC64/llDataPrint
index d292e97,d292e97..74cf2cd
Binary files differ

diff --cc src/Tools/llData/llDataSeparate/src/X86MAC64/.Depend
index a3cb929,a3cb929..6bc2426
--- 1/src/Tools/llData/llDataSeparate/src/X86MAC64/.Depend
--- 2/src/Tools/llData/llDataSeparate/src/X86MAC64/.Depend
+++ b/src/Tools/llData/llDataSeparate/src/X86MAC64/.Depend
@@@ -124,9 -124,9 +124,9 @@@ llDataSeparate.o: llDataSeparate.c /usr
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/llData.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/llData.h \
    /Users/tacyas/Eos/include/lllExtract.h \
    /Users/tacyas/Eos/include/lllDataFit.h \
    /Users/tacyas/Eos/include/lllDatarMaxLimit.h \

diff --cc src/Tools/mrcImage/fft2d/src/X86MAC64/.Depend
index 694645a,694645a..428819b
--- 1/src/Tools/mrcImage/fft2d/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/fft2d/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/fft2d/src/X86MAC64/.Depend
@@@ -78,8 -78,8 +78,9 @@@ fft2d.o: fft2d.c /usr/include/stdio.h /
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/fft2d.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrc2dsn6/src/X86MAC64/.Depend
index 632fa1e,632fa1e..7b8a409
--- 1/src/Tools/mrcImage/mrc2dsn6/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrc2dsn6/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrc2dsn6/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrc2dsn6.o: mrc2dsn6.c /usr/include/std
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/dsn6File.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrc2hdf/src/X86MAC64/.Depend
index 0000000,0000000..6ec1806
new file mode 100644 (file)
--- /dev/null
--- /dev/null
+++ b/src/Tools/mrcImage/mrc2hdf/src/X86MAC64/.Depend
@@@ -1,0 -1,0 +1,156 @@@
++argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
++  /usr/include/sys/_symbol_aliasing.h \
++  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
++  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
++  /usr/include/sys/_types.h /usr/include/machine/_types.h \
++  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
++  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
++  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
++  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
++  /usr/include/stdlib.h /usr/include/sys/wait.h \
++  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
++  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
++  /usr/include/machine/signal.h /usr/include/i386/signal.h \
++  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
++  /usr/include/mach/i386/_structs.h \
++  /usr/include/sys/_types/_sigaltstack.h \
++  /usr/include/sys/_types/_ucontext.h \
++  /usr/include/sys/_types/_pthread_attr_t.h \
++  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
++  /usr/include/sys/resource.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
++  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
++  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
++  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
++  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
++  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
++  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
++  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
++  /usr/include/machine/endian.h /usr/include/i386/endian.h \
++  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
++  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
++  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
++  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
++  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
++  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
++  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
++  ../inc/../inc/mrc2hdf.h /Users/tacyas/Eos/include/genUtil.h \
++  /Users/tacyas/Eos/include/File.h /Users/tacyas/Eos/include/Memory.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
++  /usr/include/limits.h /usr/include/machine/limits.h \
++  /usr/include/i386/limits.h /usr/include/i386/_limits.h \
++  /usr/include/sys/syslimits.h
++init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
++  /usr/include/sys/_symbol_aliasing.h \
++  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
++  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
++  /usr/include/sys/_types.h /usr/include/machine/_types.h \
++  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
++  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
++  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
++  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
++  /usr/include/stdlib.h /usr/include/sys/wait.h \
++  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
++  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
++  /usr/include/machine/signal.h /usr/include/i386/signal.h \
++  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
++  /usr/include/mach/i386/_structs.h \
++  /usr/include/sys/_types/_sigaltstack.h \
++  /usr/include/sys/_types/_ucontext.h \
++  /usr/include/sys/_types/_pthread_attr_t.h \
++  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
++  /usr/include/sys/resource.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
++  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
++  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
++  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
++  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
++  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
++  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
++  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
++  /usr/include/machine/endian.h /usr/include/i386/endian.h \
++  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
++  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
++  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
++  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
++  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
++  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
++  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
++  ../inc/../inc/mrc2hdf.h /Users/tacyas/Eos/include/genUtil.h \
++  /Users/tacyas/Eos/include/File.h /Users/tacyas/Eos/include/Memory.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
++  /usr/include/limits.h /usr/include/machine/limits.h \
++  /usr/include/i386/limits.h /usr/include/i386/_limits.h \
++  /usr/include/sys/syslimits.h
++usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
++  /usr/include/sys/_symbol_aliasing.h \
++  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
++  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
++  /usr/include/sys/_types.h /usr/include/machine/_types.h \
++  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
++  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
++  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
++  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
++  /usr/include/stdlib.h /usr/include/sys/wait.h \
++  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
++  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
++  /usr/include/machine/signal.h /usr/include/i386/signal.h \
++  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
++  /usr/include/mach/i386/_structs.h \
++  /usr/include/sys/_types/_sigaltstack.h \
++  /usr/include/sys/_types/_ucontext.h \
++  /usr/include/sys/_types/_pthread_attr_t.h \
++  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
++  /usr/include/sys/resource.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
++  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
++  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
++  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
++  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
++  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
++  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
++  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
++  /usr/include/machine/endian.h /usr/include/i386/endian.h \
++  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
++  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
++  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
++  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
++  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
++  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
++  ../inc/config.h ../inc/../inc/mrc2hdf.h
++util.o: util.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
++  /usr/include/sys/_symbol_aliasing.h \
++  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
++  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
++  /usr/include/sys/_types.h /usr/include/machine/_types.h \
++  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
++  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
++  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
++  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
++  /usr/include/stdlib.h /usr/include/sys/wait.h \
++  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
++  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
++  /usr/include/machine/signal.h /usr/include/i386/signal.h \
++  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
++  /usr/include/mach/i386/_structs.h \
++  /usr/include/sys/_types/_sigaltstack.h \
++  /usr/include/sys/_types/_ucontext.h \
++  /usr/include/sys/_types/_pthread_attr_t.h \
++  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
++  /usr/include/sys/resource.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
++  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
++  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
++  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
++  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
++  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
++  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
++  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
++  /usr/include/machine/endian.h /usr/include/i386/endian.h \
++  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
++  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
++  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
++  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
++  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
++  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
++  ../inc/config.h ../inc/../inc/mrc2hdf.h

diff --cc src/Tools/mrcImage/mrc2hdf/src/X86MAC64/Makefile
index 0000000,0000000..ec61247
new file mode 100755 (executable)
--- /dev/null
--- /dev/null
+++ b/src/Tools/mrcImage/mrc2hdf/src/X86MAC64/Makefile
@@@ -1,0 -1,0 +1,114 @@@
++include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
++include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
++include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
++include $(EOS_HOME)/src/Config/DefineTool.inc
++
++LIBFILES   = \
++                      $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
++
++LIBFILESDEBUG   = \
++                      $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
++
++SRCC  = \
++                      $(OBJECTNAME).c \
++                      init.c \
++                      argCheck.c \
++                      usage.c  \
++                      util.c 
++
++SRCCXX  = \
++                      $(OBJECTNAME).cc \
++                      init.cc \
++                      argCheck.cc \
++                      usage.cc  \
++                      util.cc 
++
++MODULES    = \
++                      $(OBJECTNAME).o \
++                      init.o \
++                      argCheck.o \
++                      usage.o  \
++                      util.o 
++
++REALMODULES    = \
++                      $(OSTYPE)/$(OBJECTNAME).o \
++                      $(OSTYPE)/init.o \
++                      $(OSTYPE)/argCheck.o \
++                      $(OSTYPE)/usage.o \
++                      $(OSTYPE)/util.o 
++
++MODULESDEBUG    = \
++                      $(OBJECTNAME).debugo \
++                      init.debugo \
++                      argCheck.debugo \
++                      usage.debugo  \
++                      util.debugo 
++
++MODULESCUDAGDB    = \
++                      $(OBJECTNAME).cudagdb.o \
++                      init.cudagdb.o \
++                      argCheck.cudagdb.o \
++                      usage.cudagdb.o  \
++                      util.cudagdb.o 
++
++REALMODULESDEBUG    = \
++                      $(OSTYPE)/$(OBJECTNAME).debugo \
++                      $(OSTYPE)/init.debugo \
++                      $(OSTYPE)/argCheck.debugo \
++                      $(OSTYPE)/usage.debugo \
++                      $(OSTYPE)/util.debugo 
++
++
++$(OBJECTNAME): $(MODULES) $(LIBFILES)
++      @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
++      then \
++              echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
++              $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
++      fi
++      @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
++      then \
++              echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
++              $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
++      fi
++      @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
++      then \
++              echo "MICO"; \
++              echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
++              $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
++      fi
++      @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
++      then \
++              echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
++              $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
++      fi
++
++
++$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
++      @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
++      then \
++              echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
++              $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
++      fi
++      @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
++      then \
++              echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
++              $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
++      fi
++      @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
++      then \
++              echo "MICO"; \
++              echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
++              $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
++      fi
++      @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
++      then \
++              echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
++              $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
++      fi
++
++$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
++      echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
++      $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
++
++include ./.Depend
++include  $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc

diff --cc src/Tools/mrcImage/mrc2hdf/src/X86MAC64/X86MAC64
index 0000000,0000000..cac6153
new file mode 120000 (symlink)
--- /dev/null
--- /dev/null
+++ b/src/Tools/mrcImage/mrc2hdf/src/X86MAC64/X86MAC64
@@@ -1,0 -1,0 +1,1 @@@
++../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrc2hdf/src/X86MAC64

diff --cc src/Tools/mrcImage/mrc2map/src/X86MAC64/.Depend
index 140e517,140e517..c48dfb0
--- 1/src/Tools/mrcImage/mrc2map/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrc2map/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrc2map/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrc2map.o: mrc2map.c /usr/include/stdio
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrc2map/src/X86MAC64/mrc2map
index c2253f4,c2253f4..cda896b
Binary files differ

diff --cc src/Tools/mrcImage/mrc3DExtractZ/src/X86MAC64/.Depend
index 4e1fee9,4e1fee9..478a01f
--- 1/src/Tools/mrcImage/mrc3DExtractZ/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrc3DExtractZ/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrc3DExtractZ/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrc3DExtractZ.o: mrc3DExtractZ.c /usr/i
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrc3DExtractZ.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86MAC64/.Depend
index 5656034,5656034..ceb0247
--- 1/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFETnormalizeBySD/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcFETnormalizeBySD.o: mrcFETnormalizeB
    ../inc/../inc/mrcFETnormalizeBySD.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcFETnormalizeBySD.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86MAC64/.Depend
index 126e23d,126e23d..52524a7
--- 1/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTBandPassFilter/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcFFTBandPassFilter.o: mrcFFTBandPassF
    ../inc/../inc/mrcFFTBandPassFilter.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86MAC64/.Depend
index e9e1ffd,e9e1ffd..544e56b
--- 1/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTCTFCompensation/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcFFTCTFCompensation.o: mrcFFTCTFCompe
    ../inc/../inc/mrcFFTCTFCompensation.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/string.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFFTDigitize/src/X86MAC64/.Depend
index ba5a022,ba5a022..e90fe8e
--- 1/src/Tools/mrcImage/mrcFFTDigitize/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTDigitize/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTDigitize/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTDigitize.o: mrcFFTDigitize.c /usr
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcFFTDigitize.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFFTExpression/src/X86MAC64/.Depend
index 5714f26,5714f26..f440592
--- 1/src/Tools/mrcImage/mrcFFTExpression/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTExpression/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTExpression/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTExpression.o: mrcFFTExpression.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcFFTExpression.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcFFTExpression.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86MAC64/.Depend
index 99e2aaf,99e2aaf..b6827df
--- 1/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTFibreDiagram.o: mrcFFTFibreDiagra
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcFFTFibreDiagram.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFFTFibreDiagram/src/X86MAC64/mrcFFTFibreDiagram
index 59b5dd2,59b5dd2..9bb2821
Binary files differ

diff --cc src/Tools/mrcImage/mrcFFTFiltering/src/X86MAC64/.Depend
index 274fc07,274fc07..f3899a2
--- 1/src/Tools/mrcImage/mrcFFTFiltering/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTFiltering/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTFiltering/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTFiltering.o: mrcFFTFiltering.c /u
    /usr/include/math.h ../inc/config.h ../inc/../inc/mrcFFTFiltering.h \
    /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/string.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFFTIQEstimation/src/X86MAC64/.Depend
index 9476b9d,9476b9d..3d2afb8
--- 1/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTIQEstimation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcFFTIQEstimation.o: mrcFFTIQEstimatio
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFFTInfo/src/X86MAC64/.Depend
index 9f49d52,9f49d52..c81a3cc
--- 1/src/Tools/mrcImage/mrcFFTInfo/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTInfo/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTInfo/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTInfo.o: mrcFFTInfo.c /usr/include
    /usr/include/math.h ../inc/config.h ../inc/../inc/mrcFFTInfo.h \
    /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/string.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcFFTInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86MAC64/.Depend
index 4385759,4385759..988a126
--- 1/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTLayerLineCheck/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcFFTLayerLineCheck.o: mrcFFTLayerLine
    ../inc/../inc/mrcFFTLayerLineCheck.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFFTMedianFilter/src/X86MAC64/.Depend
index 28812f4,28812f4..1ee94ac
--- 1/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTMedianFilter/src/X86MAC64/.Depend
@@@ -120,9 -120,9 +120,9 @@@ mrcFFTMedianFilter.o: mrcFFTMedianFilte
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcFFTMedianFilter.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \

diff --cc src/Tools/mrcImage/mrcFFTProjection/src/X86MAC64/.Depend
index 24a6d68,24a6d68..9918288
--- 1/src/Tools/mrcImage/mrcFFTProjection/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTProjection/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTProjection/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTProjection.o: mrcFFTProjection.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcFFTProjection.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcFFTInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcFFTResampling/src/X86MAC64/.Depend
index cb1b2f6,cb1b2f6..6936a7f
--- 1/src/Tools/mrcImage/mrcFFTResampling/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTResampling/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTResampling/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTResampling.o: mrcFFTResampling.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcFFTResampling.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFFTShellInfo/src/X86MAC64/.Depend
index 86bba86,86bba86..838e8f2
--- 1/src/Tools/mrcImage/mrcFFTShellInfo/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTShellInfo/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTShellInfo/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTShellInfo.o: mrcFFTShellInfo.c /u
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcFFTShellInfo.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcFFTInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcFFTShellInfo/src/X86MAC64/mrcFFTShellInfo
index 3eb9708,3eb9708..7eb4d1e
Binary files differ

diff --cc src/Tools/mrcImage/mrcFFTSizeChange/src/X86MAC64/.Depend
index c757b36,c757b36..0dbf47b
--- 1/src/Tools/mrcImage/mrcFFTSizeChange/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTSizeChange/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTSizeChange/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTSizeChange.o: mrcFFTSizeChange.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcFFTSizeChange.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFFTSpectrum/src/X86MAC64/.Depend
index 4f8408e,4f8408e..149b218
--- 1/src/Tools/mrcImage/mrcFFTSpectrum/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTSpectrum/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTSpectrum/src/X86MAC64/.Depend
@@@ -121,8 -121,8 +121,8 @@@ mrcFFTSpectrum.o: mrcFFTSpectrum.c /usr
    ../inc/../inc/mrcFFTSpectrum.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/Vector.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcFFTInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcFFTXFiltering/src/X86MAC64/.Depend
index c6bb912,c6bb912..85b9f72
--- 1/src/Tools/mrcImage/mrcFFTXFiltering/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTXFiltering/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTXFiltering/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTXFiltering.o: mrcFFTXFiltering.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcFFTXFiltering.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcFFTInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcFFTplainreduce/src/X86MAC64/.Depend
index 298b105,298b105..0fb4f4e
--- 1/src/Tools/mrcImage/mrcFFTplainreduce/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFFTplainreduce/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFFTplainreduce/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcFFTplainreduce.o: mrcFFTplainreduce.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcFFTplainreduce.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcFFTplainreduce/src/X86MAC64/mrcFFTplainreduce
index 35dc213,35dc213..2f7fe2d
Binary files differ

diff --cc src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86MAC64/.Depend
index 78391cd,78391cd..91a1f1f
--- 1/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcFTMeridianEquatorRedece/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcFTMeridianEquatorRedece.o: mrcFTMeri
    ../inc/../inc/mrcFTMeridianEquatorRedece.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86MAC64/.Depend
index 9d72e3d,9d72e3d..f91d75e
--- 1/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImage1DProjectionfrom2D.o: mrcImage1
    ../inc/../inc/mrcImage1DProjectionfrom2D.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImage1DProjectionfrom2D/src/X86MAC64/mrcImage1DProjectionfrom2D
index bf72ceb,bf72ceb..0f11517
Binary files differ

diff --cc src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86MAC64/.Depend
index 0847c3a,0847c3a..a57f776
--- 1/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImage1dAverageByCorrelation.o: mrcIm
    ../inc/../inc/mrcImage1dAverageByCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImage1dAverageByCorrelation/src/X86MAC64/mrcImage1dAverageByCorrelation
index 2d84733,2d84733..ec87ff0
Binary files differ

diff --cc src/Tools/mrcImage/mrcImage1dCutAverage/src/X86MAC64/.Depend
index 6e73b56,6e73b56..021e1b0
--- 1/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage1dCutAverage/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImage1dCutAverage.o: mrcImage1dCutAv
    ../inc/../inc/mrcImage1dCutAverage.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86MAC64/.Depend
index 0dedd7c,0dedd7c..a77201d
--- 1/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImage1dShiftAverageByAnnealing.o: mr
    ../inc/../inc/mrcImage1dShiftAverageByAnnealing.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/mrcImagefuncmin.h \
    /Users/tacyas/Eos/include/nr2.h /Users/tacyas/Eos/include/Random.h \

diff --cc src/Tools/mrcImage/mrcImage1dShiftAverageByAnnealing/src/X86MAC64/mrcImage1dShiftAverageByAnnealing
index 72a9f25,72a9f25..502b6fb
Binary files differ

diff --cc src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86MAC64/.Depend
index fbc4ef8,fbc4ef8..9ce45f4
--- 1/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImage1dShiftByCorrelation.o: mrcImag
    ../inc/../inc/mrcImage1dShiftByCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h /Users/tacyas/Eos/include/nr2.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImage1dShiftByCorrelation/src/X86MAC64/mrcImage1dShiftByCorrelation
index e4a9595,e4a9595..8348bab
Binary files differ

diff --cc src/Tools/mrcImage/mrcImage2DBackProjection/src/X86MAC64/.Depend
index 673c67e,673c67e..0971b14
--- 1/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage2DBackProjection/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImage2DBackProjection.o: mrcImage2DB
    ../inc/../inc/mrcImage2DBackProjection.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImage2DProjection/src/X86MAC64/.Depend
index f860589,f860589..93241e6
--- 1/src/Tools/mrcImage/mrcImage2DProjection/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage2DProjection/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage2DProjection/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImage2DProjection.o: mrcImage2DProje
    ../inc/../inc/mrcImage2DProjection.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImage2pdb/src/X86MAC64/.Depend
index 4580029,4580029..f8d4140
--- 1/src/Tools/mrcImage/mrcImage2pdb/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage2pdb/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage2pdb/src/X86MAC64/.Depend
@@@ -120,12 -120,12 +120,12 @@@ mrcImage2pdb.o: mrcImage2pdb.c /usr/inc
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImage2pdb.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Random.h /usr/include/time.h \
--  /usr/include/_structs.h /usr/include/sys/_structs.h \
--  /usr/include/sys/_types/_timespec.h /usr/include/sys/_types/_clock_t.h \
--  /usr/include/sys/_types/_time_t.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Random.h \
++  /usr/include/time.h /usr/include/_structs.h \
++  /usr/include/sys/_structs.h /usr/include/sys/_types/_timespec.h \
++  /usr/include/sys/_types/_clock_t.h /usr/include/sys/_types/_time_t.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86MAC64/.Depend
index b516bc7,b516bc7..8ba773f
--- 1/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImage3DHighResoEmphasis.o: mrcImage3
    ../inc/../inc/mrcImage3DHighResoEmphasis.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImage3DHighResoEmphasis/src/X86MAC64/mrcImage3DHighResoEmphasis
index d29d295,d29d295..20551a3
Binary files differ

diff --cc src/Tools/mrcImage/mrcImage3DPad/src/X86MAC64/.Depend
index f251955,f251955..7760d1e
--- 1/src/Tools/mrcImage/mrcImage3DPad/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage3DPad/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage3DPad/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,10 @@@ mrcImage3DPad.o: mrcImage3DPad.c /usr/i
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImage3DPad.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
++  /Users/tacyas/Eos/include/lmrcImage3DPad.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImage3DPad/src/X86MAC64/mrcImage3DPad
index b1b2f92,b1b2f92..a592ce2
Binary files differ

diff --cc src/Tools/mrcImage/mrcImage3DPad2/src/X86MAC64/.Depend
index 9ab3c09,9ab3c09..f54958f
--- 1/src/Tools/mrcImage/mrcImage3DPad2/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage3DPad2/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage3DPad2/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImage3DPad.o: mrcImage3DPad.c /usr/i
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImage3DPad2.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  mrcImage3DPad2.o: mrcImage3DPad2.c /usr/include/stdio.h \
    /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
@@@ -160,8 -160,8 +161,9 @@@
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImage3DPad2.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86MAC64/.Depend
index 260d64f,260d64f..d8f909a
--- 1/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage3DSymmetryFind/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImage3DSymmetryFind.o: mrcImage3DSym
    ../inc/../inc/mrcImage3DSymmetryFind.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImage3DWindowing/src/X86MAC64/.Depend
index 1f37031,1f37031..6ff65a5
--- 1/src/Tools/mrcImage/mrcImage3DWindowing/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImage3DWindowing/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImage3DWindowing/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImage3DWindowing.o: mrcImage3DWindow
    ../inc/../inc/mrcImage3DWindowing.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImage3DWindowing.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86MAC64/.Depend
index 04b8f56,04b8f56..5ff88e9
--- 1/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86MAC64/.Depend
@@@ -127,8 -127,8 +127,9 @@@ mrcImageAbnormalValueRemove.o: mrcImage
    /usr/include/sys/_structs.h /usr/include/sys/_types/_timespec.h \
    /usr/include/sys/_types/_clock_t.h /usr/include/sys/_types/_time_t.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageAbnormalValueRemove/src/X86MAC64/mrcImageAbnormalValueRemove
index 753e826,753e826..922d94b
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86MAC64/.Depend
index 8bad6d9,8bad6d9..2eeacab
--- 1/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageActinSingleParticleAnalysis/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageActinSingleParticleAnalysis.o: 
    ../inc/../inc/mrcImageActinSingleParticleAnalysis.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86MAC64/.Depend
index 8c3765e,8c3765e..c37bcf6
--- 1/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAdaptiveBinalization/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageAdaptiveBinalization.o: mrcImag
    /Users/tacyas/Eos/include/genUtil.h ../inc/config.h \
    ../inc/../inc/mrcImageAdaptiveBinalization.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageAdd/src/X86MAC64/.Depend
index f8c3e74,f8c3e74..bc47d93
--- 1/src/Tools/mrcImage/mrcImageAdd/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAdd/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAdd/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageAdd.o: mrcImageAdd.c /usr/inclu
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageAdd.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \

diff --cc src/Tools/mrcImage/mrcImageAdd/src/X86MAC64/mrcImageAdd
index ab06907,ab06907..836f2fd
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageAddValue/src/X86MAC64/.Depend
index 19e8a93,19e8a93..93f0112
--- 1/src/Tools/mrcImage/mrcImageAddValue/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAddValue/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAddValue/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageAddValue.o: mrcImageAddValue.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageAddValue.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageAddValue.h \
    /Users/tacyas/Eos/include/eosCuda.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImageAddValue/src/X86MAC64/mrcImageAddValue
index 0000000,0000000..119cae1
new file mode 100755 (executable)
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageAreaCalc/src/X86MAC64/.Depend
index dc5723e,dc5723e..6364486
--- 1/src/Tools/mrcImage/mrcImageAreaCalc/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAreaCalc/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAreaCalc/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageAreaCalc.o: mrcImageAreaCalc.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageAreaCalc.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCalcArea.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageAsProbability/src/X86MAC64/.Depend
index 1aa56d7,1aa56d7..dee5d53
--- 1/src/Tools/mrcImage/mrcImageAsProbability/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAsProbability/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAsProbability/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageAsProbability.o: mrcImageAsProb
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lmrcImageAsProbability.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86MAC64/.Depend
index 728cfc5,728cfc5..f7dadda
--- 1/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAssignedToTFofPDB/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageAssignedToTFofPDB.o: mrcImageAs
    ../inc/../inc/mrcImageAssignedToTFofPDB.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86MAC64/.Depend
index c3094ce,c3094ce..ad2e606
--- 1/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageAutoCorrelationWithWindowing.o
    ../inc/../inc/mrcImageAutoCorrelationWithWindowing.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageWindowing.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageAutoCorrelationWithWindowing/src/X86MAC64/mrcImageAutoCorrelationWithWindowing
index 5e30f49,5e30f49..816fdd3
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86MAC64/.Depend
index 316c32b,316c32b..9888f15
--- 1/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageAutoFilamentExtract.o: mrcImage
    ../inc/../inc/mrcImageAutoFilamentExtract.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86MAC64/.Depend
index 7983328,7983328..ea7a75d
--- 1/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoFilamentExtractResultAnalysis/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageAutoFilamentExtractResultAnalys
    ../inc/../inc/mrcImageAutoFilamentExtractResultAnalysis.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lllExtractdYEstimate.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86MAC64/.Depend
index 19e6079,19e6079..d7e60ff
--- 1/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageAutoRotationCorrelation.o: mrcI
    ../inc/../inc/mrcImageAutoRotationCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCorrelation.h \
    /Users/tacyas/Eos/include/PVM.h \
    /Users/tacyas/Eos/include/lmrcImageSSDA.h \

diff --cc src/Tools/mrcImage/mrcImageAutoRotationCorrelation/src/X86MAC64/mrcImageAutoRotationCorrelation
index 26f63d7,26f63d7..b5f4468
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86MAC64/.Depend
index 49d5a2a,49d5a2a..a273d13
--- 1/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageAutoRotationCorrelation3D.o: mr
    ../inc/../inc/mrcImageAutoRotationCorrelation3D.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCorrelation.h \
    /Users/tacyas/Eos/include/PVM.h \
    /Users/tacyas/Eos/include/lmrcImageSSDA.h

diff --cc src/Tools/mrcImage/mrcImageAutoRotationCorrelation3D/src/X86MAC64/mrcImageAutoRotationCorrelation3D
index 7540c0e,7540c0e..e9095a4
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86MAC64/.Depend
index 0cb47a8,0cb47a8..f531b1d
--- 1/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageAutoRotationCorrelationResultPr
    ../inc/../inc/mrcImageAutoRotationCorrelationResultPrint.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCorrelation.h \
    /Users/tacyas/Eos/include/PVM.h \
    /Users/tacyas/Eos/include/lmrcImageSSDA.h \

diff --cc src/Tools/mrcImage/mrcImageAverage/src/X86MAC64/.Depend
index 411abda,411abda..02bcaf4
--- 1/src/Tools/mrcImage/mrcImageAverage/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageAverage/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageAverage/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageAverage.o: mrcImageAverage.c /U
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageAverage.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageAverage/src/X86MAC64/mrcImageAverage
index 99acdec,99acdec..9b13f4f
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageBandPassFilter/src/X86MAC64/.Depend
index ae9ae21,ae9ae21..34ce54b
--- 1/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBandPassFilter/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageBandPassFilter.o: mrcImageBandP
    ../inc/../inc/mrcImageBandPassFilter.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageBilateralFilter/src/X86MAC64/.Depend
index b9e850a,b9e850a..c81a9dc
--- 1/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBilateralFilter/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageBilateralFilter.o: mrcImageBila
    ../inc/../inc/mrcImageBilateralFilter.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageBilateralFilter.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageBinalization/src/X86MAC64/.Depend
index 7d15d86,7d15d86..61b68c5
--- 1/src/Tools/mrcImage/mrcImageBinalization/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageBinalization/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBinalization/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageBinalization.o: mrcImageBinaliz
    ../inc/../inc/mrcImageBinalization.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageBinarization.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageBinalization/src/X86MAC64/mrcImageBinalization
index 99cbd4d,99cbd4d..16496f7
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageBlockMerge/src/X86MAC64/.Depend
index 8c357db,8c357db..ee50e55
--- 1/src/Tools/mrcImage/mrcImageBlockMerge/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageBlockMerge/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBlockMerge/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageBlockMerge.o: mrcImageBlockMerg
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageBlockMerge.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageBottomHatTransform/src/X86MAC64/.Depend
index 7af6581,7af6581..275131a
--- 1/src/Tools/mrcImage/mrcImageBottomHatTransform/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageBottomHatTransform/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBottomHatTransform/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ mrcImageBottomHatTransform.o: mrcImageB
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lmrcImageMorphology.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86MAC64/.Depend
index 7a98e15,7a98e15..f850b3e
--- 1/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageBoundaryInfo/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageBoundaryInfo.o: mrcImageBoundar
    ../inc/../inc/mrcImageBoundaryInfo.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86MAC64/.Depend
index d211119,d211119..955d7d5
--- 1/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCCDNoiseRemove/src/X86MAC64/.Depend
@@@ -123,9 -123,9 +123,9 @@@ mrcImageCCDNoiseRemove.o: mrcImageCCDNo
    ../inc/../inc/mrcImageCCDNoiseRemove.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \

diff --cc src/Tools/mrcImage/mrcImageCTFCompensation/src/X86MAC64/.Depend
index ebecf78,ebecf78..a98a260
--- 1/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCTFCompensation/src/X86MAC64/.Depend
@@@ -127,8 -127,8 +127,9 @@@ mrcImageCTFCompensation.o: mrcImageCTFC
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCTFCompensation.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageCTFCompensation/src/X86MAC64/mrcImageCTFCompensation
index 9ee60d8,9ee60d8..a0b9260
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86MAC64/.Depend
index 06a7314,06a7314..06864dc
--- 1/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/X86MAC64/.Depend
@@@ -124,9 -124,9 +124,9 @@@ mrcImageCTFCompensationForTiltImage.o: 
    ../inc/../inc/mrcImageCTFCompensationForTiltImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/File.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/File.h \
    /Users/tacyas/Eos/include/lmrcImageROI2D.h \
    /Users/tacyas/Eos/include/lmrcImageMontage.h \
    /Users/tacyas/Eos/include/lmrcImagePad.h \

diff --cc src/Tools/mrcImage/mrcImageCTFDetermination/src/X86MAC64/.Depend
index f33779b,f33779b..6b0006c
--- 1/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCTFDetermination/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageCTFDetermination.o: mrcImageCTF
    ../inc/../inc/mrcImageCTFDetermination.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCTFDetermination.h \
    /Users/tacyas/Eos/include/lllDataCTFCompensate.h \
    /Users/tacyas/Eos/include/llData.h /Users/tacyas/Eos/include/File.h \

diff --cc src/Tools/mrcImage/mrcImageCTFDetermination/src/X86MAC64/mrcImageCTFDetermination
index 73240d3,73240d3..7c1349e
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageCTFObservation/src/X86MAC64/.Depend
index 97047f2,97047f2..ffc6fc7
--- 1/src/Tools/mrcImage/mrcImageCTFObservation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCTFObservation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCTFObservation/src/X86MAC64/.Depend
@@@ -126,8 -126,8 +126,9 @@@ mrcImageCTFObservation.o: mrcImageCTFOb
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageCTFObservation/src/X86MAC64/mrcImageCTFObservation
index 7cd7650,7cd7650..ad5c6d5
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageCTFSN/src/X86MAC64/.Depend
index 7033edb,7033edb..d2d09ff
--- 1/src/Tools/mrcImage/mrcImageCTFSN/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCTFSN/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCTFSN/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageCTFSN.o: mrcImageCTFSN.c /usr/i
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageCTFSN.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageCTFSN/src/X86MAC64/mrcImageCTFSN
index 57687a5,57687a5..a8b95ba
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageCVE/src/X86MAC64/.Depend
index 04ea79a,04ea79a..ecf3972
--- 1/src/Tools/mrcImage/mrcImageCVE/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCVE/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCVE/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageCVE.o: mrcImageCVE.c /usr/inclu
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageCVE.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageCVE/src/X86MAC64/mrcImageCVE
index 05b0e9a,05b0e9a..57867e9
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86MAC64/.Depend
index 2c07d7b,2c07d7b..a8e5d27
--- 1/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCenterDensityChange/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageCenterDensityChange.o: mrcImage
    ../inc/../inc/mrcImageCenterDensityChange.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageCenterGet/src/X86MAC64/.Depend
index 407c165,407c165..ab013a0
--- 1/src/Tools/mrcImage/mrcImageCenterGet/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCenterGet/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCenterGet/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageCenterGet.o: mrcImageCenterGet.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageCenterGet.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  mrcImageCenterGet2.o: mrcImageCenterGet2.c /usr/include/stdio.h \
    /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
@@@ -161,8 -161,8 +162,9 @@@
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageCenterGet.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86MAC64/.Depend
index 11ab57e,11ab57e..e2489c5
--- 1/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCenterOfMassCalculate/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageCenterOfMassCalculate.o: mrcIma
    ../inc/../inc/mrcImageCenterOfMassCalculate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCentre.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86MAC64/.Depend
index 76c7c73,76c7c73..01c7312
--- 1/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCircumferentialProjection/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageCircumferentialProjection.o: mr
    ../inc/../inc/mrcImageCircumferentialProjection.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageClosing/src/X86MAC64/.Depend
index 3356942,3356942..909a611
--- 1/src/Tools/mrcImage/mrcImageClosing/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageClosing/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageClosing/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageClosing.o: mrcImageClosing.c /u
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageClosing.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageMorphology.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86MAC64/.Depend
index 6750dd2,6750dd2..868e8ac
--- 1/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86MAC64/.Depend
@@@ -123,9 -123,9 +123,10 @@@ mrcImageClusterAnalysis.o: mrcImageClus
    ../inc/../inc/mrcImageClusterAnalysis.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/nr2.h /Users/tacyas/Eos/include/mrcRefUtil.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/nr2.h \
++  /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/lmrcImageMultiplying.h \
    /Users/tacyas/Eos/include/lmrcImageCorrelation.h \
    /Users/tacyas/Eos/include/PVM.h \

diff --cc src/Tools/mrcImage/mrcImageClusterAnalysis/src/X86MAC64/mrcImageClusterAnalysis
index 3e3b980,3e3b980..16704db
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageColoring/src/X86MAC64/.Depend
index f135b5b,f135b5b..df9380a
--- 1/src/Tools/mrcImage/mrcImageColoring/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageColoring/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageColoring/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageColoring.o: mrcImageColoring.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageColoring.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/gifFile.h \
    /Users/tacyas/Eos/include/gif_lib.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImageConnection/src/X86MAC64/.Depend
index e0e70ca,e0e70ca..999c5c7
--- 1/src/Tools/mrcImage/mrcImageConnection/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageConnection/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageConnection/src/X86MAC64/.Depend
@@@ -122,8 -122,8 +122,9 @@@ mrcImageConnection.o: mrcImageConnectio
    /Users/tacyas/Eos/include/lmrcImageConnection.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86MAC64/.Depend
index 41f9109,41f9109..bc6cb4c
--- 1/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageConnectivityNumberCalc/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageConnectivityNumberCalc.o: mrcIm
    ../inc/../inc/mrcImageConnectivityNumberCalc.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageConnectivityNumberCalc.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86MAC64/.Depend
index c5c5d74,c5c5d74..0e63a4a
--- 1/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageContourSurfaceCreate/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageContourSurfaceCreate.o: mrcImag
    ../inc/../inc/mrcImageContourSurfaceCreate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageContourSurface.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageConvolution/src/X86MAC64/.Depend
index bb66a3c,bb66a3c..418718a
--- 1/src/Tools/mrcImage/mrcImageConvolution/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageConvolution/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageConvolution/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageConvolution.o: mrcImageConvolut
    ../inc/../inc/mrcImageConvolution.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/larray2mrc.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageConvolution/src/X86MAC64/mrcImageConvolution
index 71cc8f5,71cc8f5..3f3774b
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageCoordinateChange/src/X86MAC64/.Depend
index 446f236,446f236..cd99f92
--- 1/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCoordinateChange/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageCoordinateChange.o: mrcImageCoo
    ../inc/../inc/mrcImageCoordinateChange.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86MAC64/.Depend
index ea015e7,ea015e7..286cc64
--- 1/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCoreImageCalc/src/X86MAC64/.Depend
@@@ -126,9 -126,9 +126,9 @@@ mrcImageCoreImageCalc.o: mrcImageCoreIm
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/nr2.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/nr2.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageCorrelation/src/X86MAC64/.Depend
index d461f9c,d461f9c..1084530
--- 1/src/Tools/mrcImage/mrcImageCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCorrelation/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageCorrelation.o: mrcImageCorrelat
    ../inc/../inc/mrcImageCorrelation.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCorrelation.h \
    /Users/tacyas/Eos/include/PVM.h \
    /Users/tacyas/Eos/include/lmrcImageSSDA.h \

diff --cc src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86MAC64/.Depend
index 5a8eadc,5a8eadc..02db5ea
--- 1/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCorrelationInFourierSpace/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageCorrelationInFourierSpace.o: mr
    ../inc/../inc/mrcImageCorrelationInFourierSpace.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageCorrelationServer/src/X86MAC64/.Depend
index bd84559,bd84559..a60149a
--- 1/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCorrelationServer/src/X86MAC64/.Depend
@@@ -125,9 -125,9 +125,9 @@@ mrcImageCorrelationServer.o: mrcImageCo
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lmrcImageCorrelation.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/PVM.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/PVM.h \
    /Users/tacyas/Eos/include/lmrcImageSSDA.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageCrystalCreate/src/X86MAC64/.Depend
index e68b093,e68b093..86306ee
--- 1/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCrystalCreate/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageCrystalCreate.o: mrcImageCrysta
    ../inc/../inc/mrcImageCrystalCreate.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCrystalCreate.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86MAC64/.Depend
index 0bfb654,0bfb654..12fd240
--- 1/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCutAndSetInArray/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageCutAndSetInArray.o: mrcImageCut
    ../inc/../inc/mrcImageCutAndSetInArray.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageCylinderSection/src/X86MAC64/.Depend
index 0835542,0835542..4c39801
--- 1/src/Tools/mrcImage/mrcImageCylinderSection/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageCylinderSection/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageCylinderSection/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageCylinderSection.o: mrcImageCyli
    ../inc/../inc/mrcImageCylinderSection.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86MAC64/.Depend
index 1367995,1367995..fee3c7b
--- 1/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDeadPixelCorrection/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ mrcImageDeadPixelCorrection.o: mrcImage
    ../inc/../inc/mrcImageDeadPixelCorrection.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageDeconvolution/src/X86MAC64/.Depend
index b481183,b481183..98f9730
--- 1/src/Tools/mrcImage/mrcImageDeconvolution/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDeconvolution/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDeconvolution/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageDeconvolution.o: mrcImageDeconv
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lmrcImageDeconvolution.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImage3DPad.h \
    /Users/tacyas/Eos/include/lmrcImageMultiplying.h \
    /Users/tacyas/Eos/include/lmrcImageSubtractionCalc.h \

diff --cc src/Tools/mrcImage/mrcImageDeconvolution/src/X86MAC64/mrcImageDeconvolution
index 2df8b73,2df8b73..d65e2d8
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86MAC64/.Depend
index 2995965,2995965..1564f3d
--- 1/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDensityChangeEstimation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageDensityChangeEstimation.o: mrcI
    ../inc/../inc/mrcImageDensityChangeEstimation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageDensity.h \
    /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \

diff --cc src/Tools/mrcImage/mrcImageDensityInfo/src/X86MAC64/.Depend
index 614c7c7,614c7c7..35e2b8f
--- 1/src/Tools/mrcImage/mrcImageDensityInfo/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDensityInfo/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDensityInfo/src/X86MAC64/.Depend
@@@ -126,8 -126,8 +126,9 @@@ mrcImageDensityInfo.o: mrcImageDensityI
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageModeChange.h \
    /Users/tacyas/Eos/include/lmrcImageDensity.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImageDensityNormalization/src/X86MAC64/.Depend
index c727027,c727027..e54d84d
--- 1/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDensityNormalization/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageDensityNormalization.o: mrcImag
    ../inc/../inc/mrcImageDensityNormalization.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86MAC64/.Depend
index 1bf037a,1bf037a..2f07177
--- 1/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDensityNormalizationByImage/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageDensityNormalizationByImage.o: 
    ../inc/../inc/mrcImageDensityNormalizationByImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageDensityNormalizationByImage.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageDilation/src/X86MAC64/.Depend
index 59e10cb,59e10cb..0755674
--- 1/src/Tools/mrcImage/mrcImageDilation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDilation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDilation/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageDilation.o: mrcImageDilation.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageDilation.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageMorphology.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageDistanceConversion/src/X86MAC64/.Depend
index ba7bdb3,ba7bdb3..2ca6102
--- 1/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDistanceConversion/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageDistanceConversion.o: mrcImageD
    ../inc/../inc/mrcImageDistanceConversion.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageDistanceConversion.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86MAC64/.Depend
index 826bd53,826bd53..88fa134
--- 1/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDivideInfoForTomography/src/X86MAC64/.Depend
@@@ -124,9 -124,9 +124,9 @@@ mrcImageDivideInfoForTomography.o: mrcI
    ../inc/../inc/mrcImageDivideInfoForTomography.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \

diff --cc src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86MAC64/.Depend
index 5017631,5017631..6bfc937
--- 1/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDivideIntoTwoImages/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageDivideIntoTwoImages.o: mrcImage
    ../inc/../inc/mrcImageDivideIntoTwoImages.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageDividedByFile/src/X86MAC64/.Depend
index afc8858,afc8858..d71b9de
--- 1/src/Tools/mrcImage/mrcImageDividedByFile/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageDividedByFile/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageDividedByFile/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageDividedByFile.o: mrcImageDivide
    ../inc/../inc/mrcImageDividedByFile.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageEdgeEnhancement/src/X86MAC64/mrcImageEdgeEnhancement
index da267c1,df59094..007f171
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86MAC64/.Depend
index 4f4f346,4f4f346..f66de98
--- 1/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageEdgeImageGet/src/X86MAC64/.Depend
@@@ -126,8 -126,8 +126,9 @@@ mrcImageEdgeImageGet.o: mrcImageEdgeIma
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86MAC64/.Depend
index 8d4c79f,8d4c79f..43486ba
--- 1/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageEnhancementWithFuzzySets.o: mrc
    ../inc/../inc/mrcImageEnhancementWithFuzzySets.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageErosion/src/X86MAC64/.Depend
index 0a42e7a,0a42e7a..ae49dfc
--- 1/src/Tools/mrcImage/mrcImageErosion/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageErosion/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageErosion/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageErosion.o: mrcImageErosion.c /u
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageErosion.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageMorphology.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageExpression/src/X86MAC64/.Depend
index 2d83465,2d83465..44480b6
--- 1/src/Tools/mrcImage/mrcImageExpression/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageExpression/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageExpression/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageExpression.o: mrcImageExpressio
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageExpression.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageFFT/src/X86MAC64/.Depend
index 5038aca,5038aca..828815c
--- 1/src/Tools/mrcImage/mrcImageFFT/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFFT/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFFT/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,10 @@@ mrcImageFFT.o: mrcImageFFT.c /usr/inclu
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageFFT.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
++  /Users/tacyas/Eos/include/eosCuda.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86MAC64/.Depend
index 9b702bf,9b702bf..840b50a
--- 1/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/X86MAC64/.Depend
@@@ -124,9 -124,9 +124,9 @@@ mrcImageFFTLayerLineExtraction.o: mrcIm
    ../inc/../inc/mrcImageFFTLayerLineExtraction.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/llData.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/llData.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageFOMCalc.org/src/X86MAC64/.Depend
index 2227052,2227052..5f11bf9
--- 1/src/Tools/mrcImage/mrcImageFOMCalc.org/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFOMCalc.org/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFOMCalc.org/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageFOMCalc.o: mrcImageFOMCalc.c /u
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageFOMCalc.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageFOMCalc/src/X86MAC64/.Depend
index 2227052,2227052..5f11bf9
--- 1/src/Tools/mrcImage/mrcImageFOMCalc/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFOMCalc/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFOMCalc/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageFOMCalc.o: mrcImageFOMCalc.c /u
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageFOMCalc.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86MAC64/.Depend
index 6bff49c,6bff49c..270e3c9
--- 1/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageFeatureExtraction.o: mrcImageFe
    ../inc/../inc/mrcImageFeatureExtraction.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageFeatureExtraction.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageFeatureExtraction/src/X86MAC64/mrcImageFeatureExtraction
index 6fbf0df,6fbf0df..7cd23a6
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageFilterCreate/src/X86MAC64/.Depend
index f2e40f5,f2e40f5..b0a8edb
--- 1/src/Tools/mrcImage/mrcImageFilterCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFilterCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFilterCreate/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageFilterCreate.o: mrcImageFilterC
    ../inc/../inc/mrcImageFilterCreate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageFilterCreate.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86MAC64/.Depend
index dc1e1b6,dc1e1b6..0163e76
--- 1/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageFilteringbyFile.o: mrcImageFilt
    ../inc/../inc/mrcImageFilteringbyFile.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageFilteringbyFile/src/X86MAC64/mrcImageFilteringbyFile
index d41e4b3,d41e4b3..c699e9e
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86MAC64/.Depend
index 13b7982,13b7982..9a80f77
--- 1/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFilteringbyFileForVariance/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ mrcImageFilteringbyFileForVariance.o: 
    ../inc/../inc/mrcImageFilteringbyFileForVariance.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageFloating/src/X86MAC64/.Depend
index ada1b41,ada1b41..0598b12
--- 1/src/Tools/mrcImage/mrcImageFloating/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFloating/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFloating/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageFloating.o: mrcImageFloating.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageFloating.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageFloating.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageFloating/src/X86MAC64/mrcImageFloating
index 120122e,120122e..9bcabc9
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86MAC64/.Depend
index 1a5b974,1a5b974..5f92b8c
--- 1/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFourierPowerSpectrum/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageFourierPowerSpectrum.o: mrcImag
    ../inc/../inc/mrcImageFourierPowerSpectrum.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86MAC64/.Depend
index 5e616ff,5e616ff..19abf25
--- 1/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFourierShellCorrelation/src/X86MAC64/.Depend
@@@ -127,8 -127,8 +127,9 @@@ mrcImageFourierShellCorrelation.o: mrcI
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/lmrcImageFourierShellCorrelation.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86MAC64/.Depend
index 62b617d,62b617d..978e7bd
--- 1/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageFractalFourierShellCorrelation.
    ../inc/../inc/mrcImageFractalFourierShellCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageFourierShellCorrelation.h \
    /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \

diff --cc src/Tools/mrcImage/mrcImageFractalFourierShellCorrelation/src/X86MAC64/mrcImageFractalFourierShellCorrelation
index 4c17d12,4c17d12..1587caf
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86MAC64/.Depend
index a3532a0,a3532a0..7f908b5
--- 1/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageFractalFrourierShellCorrelation
    ../inc/../inc/mrcImageFractalFrourierShellCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageGaussDisc/src/X86MAC64/.Depend
index 5a3fe6b,5a3fe6b..d5d7dfd
--- 1/src/Tools/mrcImage/mrcImageGaussDisc/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageGaussDisc/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageGaussDisc/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageGaussDisc.o: mrcImageGaussDisc.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageGaussDisc.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageGaussSphere/src/X86MAC64/.Depend
index 9c653fe,9c653fe..dc94b23
--- 1/src/Tools/mrcImage/mrcImageGaussSphere/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageGaussSphere/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageGaussSphere/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageGaussSphere.o: mrcImageGaussSph
    ../inc/../inc/mrcImageGaussSphere.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageHeaderChange/src/X86MAC64/.Depend
index e2ed765,e2ed765..1215de0
--- 1/src/Tools/mrcImage/mrcImageHeaderChange/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageHeaderChange/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHeaderChange/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageHeaderChange.o: mrcImageHeaderC
    ../inc/../inc/mrcImageHeaderChange.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86MAC64/.Depend
index 613bac9,613bac9..f485098
--- 1/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalAveraging/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageHelicalAveraging.o: mrcImageHel
    ../inc/../inc/mrcImageHelicalAveraging.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86MAC64/.Depend
index fa6877a,fa6877a..9bc284f
--- 1/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalConvolution/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageHelicalConvolution.o: mrcImageH
    ../inc/../inc/mrcImageHelicalConvolution.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86MAC64/.Depend
index 58c4939,58c4939..8bbf79e
--- 1/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalMappingFrom2DImage/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageHelicalMappingFrom2DImage.o: mr
    ../inc/../inc/mrcImageHelicalMappingFrom2DImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageHelicalMasking/src/X86MAC64/.Depend
index dbcb047,dbcb047..efe505c
--- 1/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalMasking/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageHelicalMasking.o: mrcImageHelic
    ../inc/../inc/mrcImageHelicalMasking.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86MAC64/.Depend
index c110ab7,c110ab7..a9ead67
--- 1/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalMaskingBy2DImage/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageHelicalMaskingBy2DImage.o: mrcI
    ../inc/../inc/mrcImageHelicalMaskingBy2DImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageHelicalProjection/src/X86MAC64/.Depend
index 30b1fee,30b1fee..6cf2adf
--- 1/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHelicalProjection/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageHelicalProjection.o: mrcImageHe
    ../inc/../inc/mrcImageHelicalProjection.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageHighPassFilter/src/X86MAC64/.Depend
index cecec44,cecec44..6b085d5
--- 1/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHighPassFilter/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageHighPassFilter.o: mrcImageHighP
    ../inc/../inc/mrcImageHighPassFilter.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageHighPassFilter/src/X86MAC64/mrcImageHighPassFilter
index 3f71201,3f71201..c9a818a
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageHighlighting/src/X86MAC64/.Depend
index c9452ff,c9452ff..b74dda2
--- 1/src/Tools/mrcImage/mrcImageHighlighting/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageHighlighting/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageHighlighting/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageHighlighting.o: mrcImageHighlig
    ../inc/../inc/mrcImageHighlighting.h \
    /Users/tacyas/Eos/include/mrcImage.h /usr/include/math.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageHighlighting/src/X86MAC64/mrcImageHighlighting
index 2ae669e,2ae669e..f49e8c4
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageInfo/src/X86MAC64/.Depend
index 3065ba1,3065ba1..1380b39
--- 1/src/Tools/mrcImage/mrcImageInfo/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageInfo/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageInfo/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageInfo.o: mrcImageInfo.c /usr/inc
    /usr/include/math.h ../inc/config.h ../inc/../inc/mrcImageInfo.h \
    /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/string.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageLabeling/src/X86MAC64/.Depend
index a6ad846,a6ad846..e190e4f
--- 1/src/Tools/mrcImage/mrcImageLabeling/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageLabeling/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageLabeling/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageLabeling.o: mrcImageLabeling.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageLabeling.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageLabeling.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageLogicalOperation/src/X86MAC64/.Depend
index d842e1e,d842e1e..fdcaf4b
--- 1/src/Tools/mrcImage/mrcImageLogicalOperation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageLogicalOperation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageLogicalOperation/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ mrcImageLogicalOperation.o: mrcImageLog
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lmrcImageLogic.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageLowPassFilter/src/X86MAC64/.Depend
index f70b3cc,f70b3cc..66917a6
--- 1/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageLowPassFilter/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageLowPassFilter.o: mrcImageLowPas
    ../inc/../inc/mrcImageLowPassFilter.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageLowPassFilter/src/X86MAC64/mrcImageLowPassFilter
index 9d32f88,9d32f88..0da17a6
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageMagnificationChange/src/X86MAC64/.Depend
index b75cac6,b75cac6..4f6678b
--- 1/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMagnificationChange/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ lmrcImageMagnificationChange.o: lmrcIma
    ../inc/../inc/mrcImageMagnificationChange.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  mrcImageMagnificationChange.o: mrcImageMagnificationChange.c \
    /usr/include/stdio.h /usr/include/sys/cdefs.h \
@@@ -167,8 -167,8 +168,9 @@@
    ../inc/../inc/mrcImageMagnificationChange.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86MAC64/.Depend
index 0bb7ef9,0bb7ef9..717fc24
--- 1/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMake2DArrayImage/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageMake2DArrayImage.o: mrcImageMak
    ../inc/../inc/mrcImageMake2DArrayImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageMakeCylinder/src/X86MAC64/.Depend
index 29d6441,29d6441..379d068
--- 1/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMakeCylinder/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageMakeCylinder.o: mrcImageMakeCyl
    ../inc/../inc/mrcImageMakeCylinder.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageMakeDump/src/X86MAC64/.Depend
index e098b45,e098b45..b6133de
--- 1/src/Tools/mrcImage/mrcImageMakeDump/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMakeDump/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMakeDump/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageMakeDump.o: mrcImageMakeDump.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageMakeDump.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86MAC64/.Depend
index d8a9ee9,d8a9ee9..4f49464
--- 1/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMakeFromTextFile/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageMakeFromTextFile.o: mrcImageMak
    ../inc/../inc/mrcImageMakeFromTextFile.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageMakeSphere/src/X86MAC64/.Depend
index 634288a,634288a..cbcc527
--- 1/src/Tools/mrcImage/mrcImageMakeSphere/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMakeSphere/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMakeSphere/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageMakeSphere.o: mrcImageMakeSpher
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageMakeSphere.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86MAC64/.Depend
index 6c6e150,6c6e150..1c44744
--- 1/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMappingtoPdb/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageMappingtoPdb.o: mrcImageMapping
    ../inc/../inc/mrcImageMappingtoPdb.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h \
    /Users/tacyas/Eos/include/pdbInfoGet.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImageMaskingByImage/src/X86MAC64/.Depend
index 1409d39,1409d39..672ab81
--- 1/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMaskingByImage/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageMaskingByImage.o: mrcImageMaski
    ../inc/../inc/mrcImageMaskingByImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageMergebyside/src/X86MAC64/.Depend
index 3aee568,3aee568..e2dd10e
--- 1/src/Tools/mrcImage/mrcImageMergebyside/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMergebyside/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMergebyside/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageMergebyside.o: mrcImageMergebys
    ../inc/../inc/mrcImageMergebyside.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageMirroring/src/X86MAC64/.Depend
index c838f98,c838f98..37ba9ea
--- 1/src/Tools/mrcImage/mrcImageMirroring/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMirroring/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMirroring/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageMirroring.o: mrcImageMirroring.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageMirroring.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageMirroring.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageModeChange/src/X86MAC64/.Depend
index 55505bb,55505bb..2a8f42e
--- 1/src/Tools/mrcImage/mrcImageModeChange/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageModeChange/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageModeChange/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageModeChange.o: mrcImageModeChang
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageModeChange.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageModeChange.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageModelCreate/src/X86MAC64/.Depend
index d586ff8,d586ff8..e698b62
--- 1/src/Tools/mrcImage/mrcImageModelCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageModelCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageModelCreate/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageModelCreate.o: mrcImageModelCre
    ../inc/../inc/mrcImageModelCreate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageModelCreate.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86MAC64/.Depend
index 86087e2,86087e2..df257ce
--- 1/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageModelSubfilamentsCreate/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageModelSubfilamentsCreate.o: mrcI
    ../inc/../inc/mrcImageModelSubfilamentsCreate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageMontageCreate/src/X86MAC64/.Depend
index 7edf5f7,7edf5f7..ba7d5f7
--- 1/src/Tools/mrcImage/mrcImageMontageCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMontageCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMontageCreate/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageMontageCreate.o: mrcImageMontag
    ../inc/../inc/mrcImageMontageCreate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageMontage.h \
    /Users/tacyas/Eos/include/lmrcImagePad.h \
    /Users/tacyas/Eos/include/Memory.h \

diff --cc src/Tools/mrcImage/mrcImageMontageCreate/src/X86MAC64/mrcImageMontageCreate
index 6196f3f,6196f3f..060637d
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageMove/src/X86MAC64/.Depend
index 93b162a,93b162a..af2ee00
--- 1/src/Tools/mrcImage/mrcImageMove/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMove/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMove/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageMove.o: mrcImageMove.c /usr/inc
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageMove.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageMove.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86MAC64/.Depend
index 7d6e10c,7d6e10c..7fa61d8
--- 1/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86MAC64/.Depend
@@@ -127,8 -127,8 +127,9 @@@ mrcImageMultiCTFCompensation.o: mrcImag
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCTFCompensation.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/X86MAC64/mrcImageMultiCTFCompensation
index 24c92db,24c92db..de4967b
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86MAC64/.Depend
index 4d13edc,4d13edc..ba6f61b
--- 1/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86MAC64/.Depend
@@@ -127,8 -127,8 +127,9 @@@ mrcImageMultiCTFDetermination.o: mrcIma
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/X86MAC64/mrcImageMultiCTFDetermination
index 1a97a58,1a97a58..6dfd459
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageMultiplying/src/X86MAC64/.Depend
index 029c584,029c584..2fdf604
--- 1/src/Tools/mrcImage/mrcImageMultiplying/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMultiplying/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMultiplying/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageMultiplying.o: mrcImageMultiply
    ../inc/../inc/mrcImageMultiplying.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageMultiplying.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageMultiplying/src/X86MAC64/mrcImageMultiplying
index 1d668a6,1d668a6..cc8b7c7
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86MAC64/.Depend
index 9286c22,9286c22..9de5442
--- 1/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageMultiplyingbyFile/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageMultiplyingbyFile.o: mrcImageMu
    ../inc/../inc/mrcImageMultiplyingbyFile.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86MAC64/.Depend
index 64138aa,64138aa..7b97b68
--- 1/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNLMeansFilter/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageNLMeansFilter.o: mrcImageNLMean
    ../inc/../inc/mrcImageNLMeansFilter.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86MAC64/.Depend
index 9f78be2,9f78be2..19fbe7a
--- 1/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageNfoldAxisSearch.o: mrcImageNfol
    ../inc/../inc/mrcImageNfoldAxisSearch.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageTransformDescartesIntoPolar.h \
    /Users/tacyas/Eos/include/lDescartesIntoPolar.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImageNfoldAxisSearch/src/X86MAC64/mrcImageNfoldAxisSearch
index 0d1ad0d,0d1ad0d..e8f46e2
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageNoiseAdd/src/X86MAC64/.Depend
index b2f630d,b2f630d..8155ea0
--- 1/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNoiseAdd/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageNoiseAdd.o: mrcImageNoiseAdd.c 
    /usr/include/sys/_types/_clock_t.h /usr/include/sys/_types/_time_t.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageNoiseCreate/src/X86MAC64/.Depend
index a7e95b7,a7e95b7..c132949
--- 1/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNoiseCreate/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageNoiseCreate.o: mrcImageNoiseCre
    ../inc/../inc/mrcImageNoiseCreate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/Random.h /usr/include/time.h \
    /usr/include/_structs.h /usr/include/sys/_structs.h \

diff --cc src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86MAC64/.Depend
index 5774501,5774501..7d3f16b
--- 1/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNoiseReductionByRelaxation/src/X86MAC64/.Depend
@@@ -128,8 -128,8 +128,9 @@@ mrcImageNoiseReductionByRelaxation.o: 
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSigmaCalculate.h \
    /Users/tacyas/Eos/include/lmrcImageDataMaxAndMinGetByImage.h \
    /Users/tacyas/Eos/include/lmrcImageDataStraightCopy.h \

diff --cc src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86MAC64/.Depend
index b2142cc,b2142cc..e263e26
--- 1/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageNormalizedSubtraction.o: mrcIma
    ../inc/../inc/mrcImageNormalizedSubtraction.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSubtractionCalc.h \
    /Users/tacyas/Eos/include/lmrcImageDensityNormalizationByImage.h \
    /Users/tacyas/Eos/include/lmrcImageSigmaCalculate.h

diff --cc src/Tools/mrcImage/mrcImageNormalizedSubtraction/src/X86MAC64/mrcImageNormalizedSubtraction
index bdfd710,bdfd710..4167a7b
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageNormalizing/src/X86MAC64/.Depend
index 7ce5994,7ce5994..9626ddd
--- 1/src/Tools/mrcImage/mrcImageNormalizing/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageNormalizing/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNormalizing/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageNormalizing.o: mrcImageNormaliz
    ../inc/../inc/mrcImageNormalizing.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageNormalizing.h \
    /Users/tacyas/Eos/include/nr2.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImageNormalizing/src/X86MAC64/mrcImageNormalizing
index f665a10,f665a10..a2108b9
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageNullImageCreate/src/X86MAC64/.Depend
index 3de598d,3de598d..d96c455
--- 1/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageNullImageCreate/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageNullImageCreate.o: mrcImageNull
    ../inc/../inc/mrcImageNullImageCreate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageOddBoxel/src/X86MAC64/.Depend
index 65c30c1,65c30c1..bd7174b
--- 1/src/Tools/mrcImage/mrcImageOddBoxel/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageOddBoxel/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageOddBoxel/src/X86MAC64/.Depend
@@@ -120,9 -120,9 +120,10 @@@ mrcImageOddBoxel.o: mrcImageOddBoxel.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageOddBoxel.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/nr2.h /Users/tacyas/Eos/include/mrcRefUtil.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/nr2.h \
++  /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/lmrcImageMultiplying.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageOddBoxel/src/X86MAC64/mrcImageOddBoxel
index 1b8cf00,1b8cf00..903e281
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86MAC64/.Depend
index 60ed4df,60ed4df..7f840ec
--- 1/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageOneLineSimilarityCalc/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageOneLineSimilarityCalc.o: mrcIma
    ../inc/../inc/mrcImageOneLineSimilarityCalc.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageOneLineSimilarityCalc.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageOpening/src/X86MAC64/.Depend
index 15f8075,15f8075..65d0bbe
--- 1/src/Tools/mrcImage/mrcImageOpening/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageOpening/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageOpening/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageOpening.o: mrcImageOpening.c /u
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageOpening.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageMorphology.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImagePCA/src/X86MAC64/.Depend
index fd5b7ec,fd5b7ec..72b4e7d
--- 1/src/Tools/mrcImage/mrcImagePCA/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagePCA/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePCA/src/X86MAC64/.Depend
@@@ -43,5 -43,5 +43,6 @@@ mrcImagePCA.o: mrcImagePCA.cc /usr/incl
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h

diff --cc src/Tools/mrcImage/mrcImagePad/src/X86MAC64/.Depend
index 35411d1,35411d1..a757698
--- 1/src/Tools/mrcImage/mrcImagePad/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagePad/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePad/src/X86MAC64/.Depend
@@@ -120,9 -120,9 +120,9 @@@ mrcImagePad.o: mrcImagePad.c /usr/inclu
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImagePad.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \

diff --cc src/Tools/mrcImage/mrcImagePad/src/X86MAC64/mrcImagePad
index aa6b762,aa6b762..7724764
Binary files differ

diff --cc src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86MAC64/.Depend
index 81bf04b,81bf04b..897f3b1
--- 1/src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePanoramaCreate/src/X86MAC64/.Depend
@@@ -126,8 -126,8 +126,9 @@@ mrcImagePanoramaCreate.o: mrcImagePanor
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86MAC64/.Depend
index e9e7756,e9e7756..14816ba
--- 1/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageParticleCandidateExtract/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageParticleCandidateExtract.o: mrc
    ../inc/../inc/mrcImageParticleCandidateExtract.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImagePeakSearch/src/X86MAC64/.Depend
index b26533c,b26533c..b0268f2
--- 1/src/Tools/mrcImage/mrcImagePeakSearch/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagePeakSearch/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePeakSearch/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImagePeakSearch.o: mrcImagePeakSearc
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImagePeakSearch.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageBinarization.h \
    /Users/tacyas/Eos/include/lmrcImageCalcArea.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImagePeakSearch/src/X86MAC64/mrcImagePeakSearch
index 87c4c4a,87c4c4a..5650977
Binary files differ

diff --cc src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86MAC64/.Depend
index 9d2c159,9d2c159..1139220
--- 1/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePhaseCTFCompensationFromCTFINFO/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImagePhaseCTFCompensationFromCTFINFO
    ../inc/../inc/mrcImagePhaseCTFCompensationFromCTFINFO.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImagePixelDataGet/src/X86MAC64/mrcImagePixelDataGet
index 905f1c3,905f1c3..67e9da9
Binary files differ

diff --cc src/Tools/mrcImage/mrcImagePolyROI/src/X86MAC64/.Depend
index 49bddc7,49bddc7..5e666ac
--- 1/src/Tools/mrcImage/mrcImagePolyROI/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagePolyROI/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePolyROI/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImagePolyROI.o: mrcImagePolyROI.c /u
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImagePolyROI.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImagePosterization/src/X86MAC64/.Depend
index 63a32c5,63a32c5..13a2566
--- 1/src/Tools/mrcImage/mrcImagePosterization/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagePosterization/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePosterization/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImagePosterization.o: mrcImagePoster
    /Users/tacyas/Eos/include/lmrcImagePosterization.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImagePosterization/src/X86MAC64/mrcImagePosterization
index b6ad5b5,b6ad5b5..a69d28e
Binary files differ

diff --cc src/Tools/mrcImage/mrcImagePrint/src/X86MAC64/.Depend
index 413788a,413788a..4051f73
--- 1/src/Tools/mrcImage/mrcImagePrint/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagePrint/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagePrint/src/X86MAC64/.Depend
@@@ -121,10 -121,10 +121,10 @@@ mrcImagePrint.o: mrcImagePrint.c /usr/i
    /Users/tacyas/Eos/include/lmrcImagePrint.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/string.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/psFile.h /Users/tacyas/Eos/include/File.h \
--  /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/psFile.h \
++  /Users/tacyas/Eos/include/File.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \

diff --cc src/Tools/mrcImage/mrcImagePrint/src/X86MAC64/mrcImagePrint
index f81552b,f81552b..05f3eb0
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageProjection/src/X86MAC64/.Depend
index 5674ff2,5674ff2..ae1ff38
--- 1/src/Tools/mrcImage/mrcImageProjection/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageProjection/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageProjection/src/X86MAC64/.Depend
@@@ -121,8 -121,8 +121,9 @@@ mrcImageProjection.o: mrcImageProjectio
    ../inc/../inc/mrcImageProjection.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageProjection.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageROI/src/X86MAC64/.Depend
index 05ec6b5,05ec6b5..526298f
--- 1/src/Tools/mrcImage/mrcImageROI/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageROI/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageROI/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageROI.o: mrcImageROI.c /usr/inclu
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageROI.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageROI2D.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageROI3D/src/X86MAC64/.Depend
index f9fa0bd,f9fa0bd..5b7217e
--- 1/src/Tools/mrcImage/mrcImageROI3D/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageROI3D/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageROI3D/src/X86MAC64/.Depend
@@@ -122,8 -122,8 +122,9 @@@ mrcImageROI3D.o: mrcImageROI3D.c /usr/i
    /Users/tacyas/Eos/include/lmrcImageROI3D.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageROIs/src/X86MAC64/.Depend
index 3625a6d,3625a6d..4dc6f12
--- 1/src/Tools/mrcImage/mrcImageROIs/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageROIs/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageROIs/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ mrcImageROIs.o: mrcImageROIs.c /usr/inc
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/File.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageROI2D.h \
    /Users/tacyas/Eos/include/lmrcImageMontage.h \
    /Users/tacyas/Eos/include/lmrcImagePad.h

diff --cc src/Tools/mrcImage/mrcImageROIs/src/X86MAC64/mrcImageROIs
index 9196ab9,9196ab9..4edd032
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86MAC64/.Depend
index 049d437,049d437..b22efb6
--- 1/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageROItoPCAoutputImage/src/X86MAC64/.Depend
@@@ -131,8 -131,8 +131,9 @@@ mrcImageROItoPCAoutputImage.o: mrcImage
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageRadialDistribution/src/X86MAC64/.Depend
index 31b000f,31b000f..f4589df
--- 1/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRadialDistribution/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageRadialDistribution.o: mrcImageR
    ../inc/../inc/mrcImageRadialDistribution.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageRadialDistribution.h \
    /Users/tacyas/Eos/include/lmrcImageDensityInverse.h \
    /Users/tacyas/Eos/include/lmrcImageDensity.h \

diff --cc src/Tools/mrcImage/mrcImageRandomParticlesImageCreate/src/X86MAC64/.Depend
index 3904c64,3904c64..9f478f0
--- 1/src/Tools/mrcImage/mrcImageRandomParticlesImageCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRandomParticlesImageCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRandomParticlesImageCreate/src/X86MAC64/.Depend
@@@ -127,8 -127,8 +127,9 @@@ mrcImageRandomParticlesImageCreate.o: 
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageRealValueAdd/src/X86MAC64/.Depend
index db2aea3,db2aea3..0c8ed54
--- 1/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRealValueAdd/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageRealValueAdd.o: mrcImageRealVal
    ../inc/../inc/mrcImageRealValueAdd.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageRealValueAdd/src/X86MAC64/mrcImageRealValueAdd
index 6a92704,6a92704..da4a7f1
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageRectangleGet/src/X86MAC64/.Depend
index 9c2e707,9c2e707..c2195db
--- 1/src/Tools/mrcImage/mrcImageRectangleGet/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRectangleGet/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRectangleGet/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageRectangleGet.o: mrcImageRectang
    ../inc/../inc/mrcImageRectangleGet.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86MAC64/.Depend
index 88dd790,88dd790..f1c4549
--- 1/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRectangleGetByCorrelation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageRectangleGetByCorrelation.o: mr
    ../inc/../inc/mrcImageRectangleGetByCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageRefConv2D/src/X86MAC64/.Depend
index d7c0b51,d7c0b51..342ba6f
--- 1/src/Tools/mrcImage/mrcImageRefConv2D/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRefConv2D/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRefConv2D/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageRefConv2D.o: mrcImageRefConv2D.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageRefConv2D.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageRefCreate/src/X86MAC64/.Depend
index 9880f47,9880f47..02d78f0
--- 1/src/Tools/mrcImage/mrcImageRefCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRefCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRefCreate/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageRefCreate.o: mrcImageRefCreate.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageRefCreate.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86MAC64/.Depend
index fa1f7a8,fa1f7a8..d382be4
--- 1/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRefFFTConv2D/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageRefFFTConv2D.o: mrcImageRefFFTC
    ../inc/../inc/mrcImageRefFFTConv2D.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86MAC64/.Depend
index 5e11cb6,5e11cb6..6fb6bf0
--- 1/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRefScaleChangeWithPad/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageRefScaleChangeWithPad.o: mrcIma
    ../inc/../inc/mrcImageRefScaleChangeWithPad.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86MAC64/.Depend
index db08c09,db08c09..b197bae
--- 1/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageResolutionEstimateForFilaments.
    ../inc/../inc/mrcImageResolutionEstimateForFilaments.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageResolutionEstimateForFilaments/src/X86MAC64/mrcImageResolutionEstimateForFilaments
index 6e4351d,6e4351d..1088fbc
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageReverse/src/X86MAC64/.Depend
index fce130f,fce130f..edab909
--- 1/src/Tools/mrcImage/mrcImageReverse/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageReverse/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageReverse/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageReverse.o: mrcImageReverse.c /u
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageReverse.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageRotation/src/X86MAC64/.Depend
index 61c3d12,61c3d12..e654590
--- 1/src/Tools/mrcImage/mrcImageRotation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRotation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRotation/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageRotation.o: mrcImageRotation.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageRotation.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageRotation3D/src/X86MAC64/.Depend
index 82e1142,82e1142..5183a72
--- 1/src/Tools/mrcImage/mrcImageRotation3D/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageRotation3D/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageRotation3D/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageRotation3D.o: mrcImageRotation3
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageRotation3D.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageSN/src/X86MAC64/.Depend
index 042385a,042385a..cf0e3c2
--- 1/src/Tools/mrcImage/mrcImageSN/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSN/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSN/src/X86MAC64/.Depend
@@@ -126,8 -126,8 +126,9 @@@ mrcImageSN.o: mrcImageSN.c /usr/include
    /Users/tacyas/Eos/include/lmrcImagesStatDataGet.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86MAC64/.Depend
index 558da1c,558da1c..f1f7bad
--- 1/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSamplingUnitChange/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageSamplingUnitChange.o: mrcImageS
    ../inc/../inc/mrcImageSamplingUnitChange.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSamplingUnitChange.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageScalarAdd/src/X86MAC64/.Depend
index 83ece66,83ece66..f3e906c
--- 1/src/Tools/mrcImage/mrcImageScalarAdd/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageScalarAdd/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageScalarAdd/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageScalarAdd.o: mrcImageScalarAdd.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageScalarAdd.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageSectionGet/src/X86MAC64/.Depend
index e186251,e186251..c672745
--- 1/src/Tools/mrcImage/mrcImageSectionGet/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSectionGet/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSectionGet/src/X86MAC64/.Depend
@@@ -121,8 -121,8 +121,9 @@@ mrcImageSectionGet.o: mrcImageSectionGe
    ../inc/../inc/mrcImageSectionGet.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageSetFunction/src/X86MAC64/.Depend
index 17d22a1,17d22a1..65fad79
--- 1/src/Tools/mrcImage/mrcImageSetFunction/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSetFunction/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSetFunction/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageSetFunction.o: mrcImageSetFunct
    ../inc/../inc/mrcImageSetFunction.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageShapeOrientation/src/X86MAC64/.Depend
index ab72a85,ab72a85..47cf76e
--- 1/src/Tools/mrcImage/mrcImageShapeOrientation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageShapeOrientation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageShapeOrientation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageShapeOrientation.o: mrcImageSha
    ../inc/../inc/mrcImageShapeOrientation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageShapePCA/src/X86MAC64/.Depend
index 9318ce6,9318ce6..0ca2e7c
--- 1/src/Tools/mrcImage/mrcImageShapePCA/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageShapePCA/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageShapePCA/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,8 @@@ mrcImageShapePCA.o: mrcImageShapePCA.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageShapePCA.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/Array.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
    /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageShapePCA.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageShapePCAFit/src/X86MAC64/.Depend
index 3bd37ef,3bd37ef..4c174df
--- 1/src/Tools/mrcImage/mrcImageShapePCAFit/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageShapePCAFit/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageShapePCAFit/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageShapePCAFit.o: mrcImageShapePCA
    ../inc/../inc/mrcImageShapePCAFit.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageShapePCA.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageShift/src/X86MAC64/.Depend
index 6cacc75,6cacc75..fb91474
--- 1/src/Tools/mrcImage/mrcImageShift/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageShift/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageShift/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageShift.o: mrcImageShift.c /usr/i
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageShift.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86MAC64/.Depend
index b337640,b337640..cadcc3a
--- 1/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageShiftFollowingGC/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageShiftFollowingGC.o: mrcImageShi
    ../inc/../inc/mrcImageShiftFollowingGC.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageDensity.h \
    /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \

diff --cc src/Tools/mrcImage/mrcImageShrink/src/X86MAC64/.Depend
index 3128c8a,3128c8a..f81caec
--- 1/src/Tools/mrcImage/mrcImageShrink/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageShrink/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageShrink/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageShrink.o: mrcImageShrink.c /usr
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageShrink.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageSiemensStar/src/X86MAC64/.Depend
index e9bf73d,e9bf73d..919079e
--- 1/src/Tools/mrcImage/mrcImageSiemensStar/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSiemensStar/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSiemensStar/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageSiemensStar.o: mrcImageSiemensS
    ../inc/../inc/mrcImageSiemensStar.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86MAC64/.Depend
index 3b89fbd,3b89fbd..77e7cef
--- 1/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSimilarImageSearch/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageSimilarImageSearch.o: mrcImageS
    ../inc/../inc/mrcImageSimilarImageSearch.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86MAC64/.Depend
index ae5abb4,ae5abb4..995b693
--- 1/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86MAC64/.Depend
@@@ -127,8 -127,8 +127,9 @@@ mrcImageSimilarityEstimate.o: mrcImageS
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageCorrelation.h \
    /Users/tacyas/Eos/include/PVM.h \
    /Users/tacyas/Eos/include/lmrcImageSSDA.h

diff --cc src/Tools/mrcImage/mrcImageSimilarityEstimate/src/X86MAC64/mrcImageSimilarityEstimate
index ae68a5c,ae68a5c..f266875
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86MAC64/.Depend
index 1cb5425,1cb5425..4e0d0ff
--- 1/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageSinogramCorrelation.o: mrcImage
    ../inc/../inc/mrcImageSinogramCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSinogram.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageSinogramCorrelation/src/X86MAC64/mrcImageSinogramCorrelation
index 8db0638,8db0638..c4993ae
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageSinogramCreate/src/X86MAC64/.Depend
index 75a13eb,75a13eb..b928faf
--- 1/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSinogramCreate/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageSinogramCreate.o: mrcImageSinog
    ../inc/../inc/mrcImageSinogramCreate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSinogram.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageSinogramCreate/src/X86MAC64/mrcImageSinogramCreate
index 2265bb7,2265bb7..7c4d606
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageSinogramFFT/src/X86MAC64/.Depend
index 6156db8,6156db8..7ed0cfb
--- 1/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSinogramFFT/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageSinogramFFT.o: mrcImageSinogram
    ../inc/../inc/mrcImageSinogramFFT.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSinogramFFT.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageSinogramFFT/src/X86MAC64/mrcImageSinogramFFT
index 2ca05db,2ca05db..b170f18
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageSmoothing/src/X86MAC64/.Depend
index f79586e,f79586e..4663f62
--- 1/src/Tools/mrcImage/mrcImageSmoothing/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSmoothing/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSmoothing/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageSmoothing.o: mrcImageSmoothing.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageSmoothing.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageSolventFlattening/src/X86MAC64/.Depend
index a0dad0d,a0dad0d..f339d5c
--- 1/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSolventFlattening/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ mrcImageSolventFlattening.o: mrcImageSo
    /Users/tacyas/Eos/include/lmrcImageSolventFlattening.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageSolventFlattening/src/X86MAC64/mrcImageSolventFlattening
index 76bff21,76bff21..9b81318
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageSphere/src/X86MAC64/.Depend
index b2e649e,b2e649e..b5c37bb
--- 1/src/Tools/mrcImage/mrcImageSphere/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSphere/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSphere/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageSphere.o: mrcImageSphere.c /usr
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageSphere.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSphere.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageSphereCheck/src/X86MAC64/.Depend
index b5a4df2,b5a4df2..a48ad59
--- 1/src/Tools/mrcImage/mrcImageSphereCheck/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSphereCheck/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSphereCheck/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageSphereCheck.o: mrcImageSphereCh
    ../inc/../inc/mrcImageSphereCheck.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageSplit/src/X86MAC64/.Depend
index adf526c,adf526c..79c66c1
--- 1/src/Tools/mrcImage/mrcImageSplit/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSplit/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSplit/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageSplit.o: mrcImageSplit.c /usr/i
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageSplit.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSplit.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageSquare/src/X86MAC64/.Depend
index 086fe61,086fe61..0376aee
--- 1/src/Tools/mrcImage/mrcImageSquare/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSquare/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSquare/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageSquare.o: mrcImageSquare.c /usr
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageSquare.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageStack/src/X86MAC64/.Depend
index 80a787d,80a787d..83624ea
--- 1/src/Tools/mrcImage/mrcImageStack/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageStack/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageStack/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageStack.o: mrcImageStack.c /usr/i
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageStack.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageStandardDeviation/src/X86MAC64/.Depend
index a24199a,a24199a..7ce644a
--- 1/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageStandardDeviation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageStandardDeviation.o: mrcImageSt
    ../inc/../inc/mrcImageStandardDeviation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageSubtraction/src/X86MAC64/.Depend
index 62fe599,62fe599..39effee
--- 1/src/Tools/mrcImage/mrcImageSubtraction/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSubtraction/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSubtraction/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageSubtraction.o: mrcImageSubtract
    ../inc/../inc/mrcImageSubtraction.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageSubtraction/src/X86MAC64/mrcImageSubtraction
index 14188e0,14188e0..1c7fb38
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageSuperResolution/src/X86MAC64/.Depend
index 599b22b,599b22b..7809c08
--- 1/src/Tools/mrcImage/mrcImageSuperResolution/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSuperResolution/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSuperResolution/src/X86MAC64/.Depend
@@@ -123,9 -123,9 +123,10 @@@ mrcImageSuperResolution.o: mrcImageSupe
    ../inc/../inc/mrcImageSuperResolution.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/nr2.h /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/nr2.h \
++  /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \

diff --cc src/Tools/mrcImage/mrcImageSuperResolution/src/X86MAC64/mrcImageSuperResolution
index 449d16b,449d16b..cdb2be2
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86MAC64/.Depend
index f0ee2bd,f0ee2bd..6727478
--- 1/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageSymmetryAverage.o: mrcImageSymm
    ../inc/../inc/mrcImageSymmetryAverage.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/lDescartesIntoPolar.h \
    /Users/tacyas/Eos/include/lmrcImageSymmetryFind.h \

diff --cc src/Tools/mrcImage/mrcImageSymmetryAverage/src/X86MAC64/mrcImageSymmetryAverage
index 44c9c08,44c9c08..5f38e2f
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86MAC64/.Depend
index 0f96a67,0f96a67..2faedc3
--- 1/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageSymmetryCentreFind.o: mrcImageS
    ../inc/../inc/mrcImageSymmetryCentreFind.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSymmetryFind.h \
    /Users/tacyas/Eos/include/lDescartesIntoPolar.h \
    /Users/tacyas/Eos/include/lmrcImageTransformDescartesIntoPolar.h

diff --cc src/Tools/mrcImage/mrcImageSymmetryCentreFind/src/X86MAC64/mrcImageSymmetryCentreFind
index dd5eb07,dd5eb07..c774c4f
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageSymmetryFind/src/X86MAC64/.Depend
index efae797,efae797..58be205
--- 1/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageSymmetryFind/src/X86MAC64/.Depend
@@@ -126,8 -126,8 +126,9 @@@ mrcImageSymmetryFind.o: mrcImageSymmetr
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/lmrcImageSymmetryFind.h \
    /Users/tacyas/Eos/include/lDescartesIntoPolar.h \

diff --cc src/Tools/mrcImage/mrcImageSymmetryFind/src/X86MAC64/mrcImageSymmetryFind
index 938d8f1,938d8f1..223497f
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageTfunction/src/X86MAC64/.Depend
index 095d45b,095d45b..ed71ad1
--- 1/src/Tools/mrcImage/mrcImageTfunction/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageTfunction/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTfunction/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageTfunction.o: mrcImageTfunction.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageTfunction.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageTfunction/src/X86MAC64/mrcImageTfunction
index dcf0501,dcf0501..4bfda4a
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86MAC64/.Depend
index 8e5103c,8e5103c..8ff01bb
--- 1/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageTiltAxisSearch.o: mrcImageTiltA
    ../inc/../inc/mrcImageTiltAxisSearch.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \

diff --cc src/Tools/mrcImage/mrcImageTiltAxisSearch/src/X86MAC64/mrcImageTiltAxisSearch
index f88a3cc,f88a3cc..f0b9df3
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageTiltAxisSearchHelp/src/X86MAC64/.Depend
index 668a275,668a275..d7b393e
--- 1/src/Tools/mrcImage/mrcImageTiltAxisSearchHelp/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageTiltAxisSearchHelp/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTiltAxisSearchHelp/src/X86MAC64/.Depend
@@@ -127,8 -127,8 +127,9 @@@ mrcImageTiltAxisSearchHelp.o: mrcImageT
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageTiltAxisSearchHelp/src/X86MAC64/mrcImageTiltAxisSearchHelp
index c73d30b,c73d30b..d9a4518
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageToNAMDConstantForces/src/X86MAC64/.Depend
index 5cb03b3,5cb03b3..badeaca
--- 1/src/Tools/mrcImage/mrcImageToNAMDConstantForces/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageToNAMDConstantForces/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageToNAMDConstantForces/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageToNAMDConstantForces.o: mrcImag
    ../inc/../inc/mrcImageToNAMDConstantForces.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h /Users/tacyas/Eos/include/Random.h \
    /usr/include/time.h /usr/include/_structs.h \
    /usr/include/sys/_structs.h /usr/include/sys/_types/_timespec.h \

diff --cc src/Tools/mrcImage/mrcImageToPointsSet/src/X86MAC64/.Depend
index 622a0ef,622a0ef..a4b8efa
--- 1/src/Tools/mrcImage/mrcImageToPointsSet/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageToPointsSet/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageToPointsSet/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageToPointsSet.o: mrcImageToPoints
    ../inc/../inc/mrcImageToPointsSet.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageBinarization.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageToPointsSet/src/X86MAC64/mrcImageToPointsSet
index 22b3fc5,22b3fc5..ed1890d
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageTopHatTransform/src/X86MAC64/.Depend
index 96bdfc6,96bdfc6..6d4f09a
--- 1/src/Tools/mrcImage/mrcImageTopHatTransform/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageTopHatTransform/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTopHatTransform/src/X86MAC64/.Depend
@@@ -84,6 -84,6 +84,49 @@@ init.o: init.c /usr/include/stdio.h /us
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h
++mrcImageTopHatTransform.o: mrcImageTopHatTransform.c /usr/include/stdio.h \
++  /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
++  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
++  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
++  /usr/include/sys/_types.h /usr/include/machine/_types.h \
++  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
++  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
++  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
++  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
++  /usr/include/stdlib.h /usr/include/sys/wait.h \
++  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
++  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
++  /usr/include/machine/signal.h /usr/include/i386/signal.h \
++  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
++  /usr/include/mach/i386/_structs.h \
++  /usr/include/sys/_types/_sigaltstack.h \
++  /usr/include/sys/_types/_ucontext.h \
++  /usr/include/sys/_types/_pthread_attr_t.h \
++  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
++  /usr/include/sys/resource.h \
++  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/stdint.h \
++  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
++  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
++  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
++  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
++  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
++  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
++  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
++  /usr/include/machine/endian.h /usr/include/i386/endian.h \
++  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
++  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
++  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
++  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
++  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
++  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
++  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
++  ../inc/../inc/mrcImageTopHatTransform.h \
++  /Users/tacyas/Eos/include/genUtil.h \
++  /Users/tacyas/Eos/include/lmrcImageMorphology.h \
++  /Users/tacyas/Eos/include/mrcImage.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageTrans/src/X86MAC64/.Depend
index de7d636,de7d636..5ea73a8
--- 1/src/Tools/mrcImage/mrcImageTrans/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageTrans/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTrans/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageTrans.o: mrcImageTrans.c /usr/i
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageTrans.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageMove.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/X86MAC64/.Depend
index 22e630c,22e630c..e604d70
--- 1/src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageTransformDescartesIntoPolar.o: 
    ../inc/../inc/mrcImageTransformDescartesIntoPolar.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSymmetryFind.h \
    /Users/tacyas/Eos/include/lDescartesIntoPolar.h \
    /Users/tacyas/Eos/include/lmrcImageTransformDescartesIntoPolar.h

diff --cc src/Tools/mrcImage/mrcImageTransformDescartesIntoPolar/src/X86MAC64/mrcImageTransformDescartesIntoPolar
index 8f650cf,8f650cf..b51c540
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageTransformSign/src/X86MAC64/.Depend
index 6b98b4c,6b98b4c..d6eacf5
--- 1/src/Tools/mrcImage/mrcImageTransformSign/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageTransformSign/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTransformSign/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageTransformSign.o: mrcImageTransf
    ../inc/../inc/mrcImageTransformSign.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageTranspose/src/X86MAC64/.Depend
index d43501e,d43501e..8a53b96
--- 1/src/Tools/mrcImage/mrcImageTranspose/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageTranspose/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageTranspose/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageTranspose.o: mrcImageTranspose.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageTranspose.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageUnbentROI/src/X86MAC64/.Depend
index 76dac2c,76dac2c..f2aaf78
--- 1/src/Tools/mrcImage/mrcImageUnbentROI/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageUnbentROI/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageUnbentROI/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageUnbentROI.o: mrcImageUnbentROI.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageUnbentROI.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImageUnexpectedMassFromPDB/src/X86MAC64/.Depend
index 7e4c55d,7e4c55d..2c81899
--- 1/src/Tools/mrcImage/mrcImageUnexpectedMassFromPDB/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageUnexpectedMassFromPDB/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageUnexpectedMassFromPDB/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcImageUnexpectedMassFromPDB.o: mrcIma
    ../inc/../inc/mrcImageUnexpectedMassFromPDB.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageUntwist/src/X86MAC64/.Depend
index 0911eaf,0911eaf..a6b0111
--- 1/src/Tools/mrcImage/mrcImageUntwist/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageUntwist/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageUntwist/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageUntwist.o: mrcImageUntwist.c /u
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageUntwist.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageVarianceAnalysis/src/X86MAC64/.Depend
index 1d2801d,1d2801d..86fcea8
--- 1/src/Tools/mrcImage/mrcImageVarianceAnalysis/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageVarianceAnalysis/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageVarianceAnalysis/src/X86MAC64/.Depend
@@@ -128,8 -128,8 +128,9 @@@ mrcImageVarianceAnalysis.o: mrcImageVar
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImagesStatDataGet.h \
    /Users/tacyas/Eos/include/lmrcImageMultiplying.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImageVarianceAnalysis/src/X86MAC64/mrcImageVarianceAnalysis
index 20b7727,20b7727..cbe55a0
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageVarianceMap/src/X86MAC64/.Depend
index fc32c89,fc32c89..8f31e59
--- 1/src/Tools/mrcImage/mrcImageVarianceMap/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageVarianceMap/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageVarianceMap/src/X86MAC64/.Depend
@@@ -126,8 -126,8 +126,9 @@@ mrcImageVarianceMap.o: mrcImageVariance
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImagesStatDataGet.h \
    /Users/tacyas/Eos/include/lmrcImageMultiplying.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImageVarianceMap/src/X86MAC64/mrcImageVarianceMap
index f57d9bf,f57d9bf..daacafd
Binary files differ

diff --cc src/Tools/mrcImage/mrcImageVolumeCalc/src/X86MAC64/.Depend
index 4408e97,4408e97..1ee998f
--- 1/src/Tools/mrcImage/mrcImageVolumeCalc/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageVolumeCalc/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageVolumeCalc/src/X86MAC64/.Depend
@@@ -124,9 -124,9 +124,9 @@@ mrcImageVolumeCalc.o: mrcImageVolumeCal
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/nr2.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/nr2.h \
    /Users/tacyas/Eos/include/lmrcImageVolumeCalc.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageWindowing/src/X86MAC64/.Depend
index dc7d2f2,dc7d2f2..44471ad
--- 1/src/Tools/mrcImage/mrcImageWindowing/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageWindowing/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageWindowing/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImageWindowing.o: mrcImageWindowing.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageWindowing.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageWindowing.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImageZPad/src/X86MAC64/.Depend
index d6dab0c,d6dab0c..883c8b8
--- 1/src/Tools/mrcImage/mrcImageZPad/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImageZPad/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImageZPad/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImage3DPad2.o: mrcImage3DPad2.c /usr
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageZPad.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  mrcImageZPad.o: mrcImageZPad.c /usr/include/stdio.h \
    /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
@@@ -160,8 -160,8 +161,9 @@@
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImageZPad.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcImagepdbFileReduce/src/X86MAC64/.Depend
index 6664e93,6664e93..3de53e1
--- 1/src/Tools/mrcImage/mrcImagepdbFileReduce/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagepdbFileReduce/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagepdbFileReduce/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImagepdbFileReduce.o: mrcImagepdbFil
    ../inc/../inc/mrcImagepdbFileReduce.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h \
    /Users/tacyas/Eos/include/pdbInfoGet.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcImagesSinogramCorrelation/src/X86MAC64/.Depend
index 5a804a0,5a804a0..89f68b4
--- 1/src/Tools/mrcImage/mrcImagesSinogramCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagesSinogramCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagesSinogramCorrelation/src/X86MAC64/.Depend
@@@ -156,9 -156,9 +156,9 @@@ mrcImagesSinogramCorrelation.o: mrcImag
    ../inc/../inc/mrcImagesSinogramCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \

diff --cc src/Tools/mrcImage/mrcImagesSinogramCorrelation/src/X86MAC64/mrcImagesSinogramCorrelation
index 3a6c09f,3a6c09f..aa0d90d
Binary files differ

diff --cc src/Tools/mrcImage/mrcImagestoRef/src/X86MAC64/.Depend
index e885fca,e885fca..fc7e471
--- 1/src/Tools/mrcImage/mrcImagestoRef/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImagestoRef/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImagestoRef/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcImagestoRef.o: mrcImagestoRef.c /usr
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcImagestoRef.h /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcImateToPointsSet/src/X86MAC64/.Depend
index 1444903,1444903..25b14b0
--- 1/src/Tools/mrcImage/mrcImateToPointsSet/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcImateToPointsSet/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcImateToPointsSet/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImateToPointsSet.o: mrcImateToPoints
    ../inc/../inc/mrcImateToPointsSet.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcInfo/src/X86MAC64/.Depend
index 19f71c4,19f71c4..32f836b
--- 1/src/Tools/mrcImage/mrcInfo/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcInfo/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcInfo/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcInfo.o: mrcInfo.c /usr/include/stdio
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcInfo.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcInfoSet/src/X86MAC64/.Depend
index 6cdd91f,6cdd91f..6f25579
--- 1/src/Tools/mrcImage/mrcInfoSet/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcInfoSet/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcInfoSet/src/X86MAC64/.Depend
@@@ -120,9 -120,9 +120,10 @@@ mrcInfoSet.o: mrcInfoSet.c /usr/include
    /Users/tacyas/Eos/include/string.h /usr/include/math.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  ../inc/config.h ../inc/../inc/mrcInfoSet.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h ../inc/config.h \
++  ../inc/../inc/mrcInfoSet.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcMask/src/X86MAC64/.Depend
index 717baa8,717baa8..09bb950
--- 1/src/Tools/mrcImage/mrcMask/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcMask/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcMask/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcMask.o: mrcMask.c /usr/include/stdio
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcMask.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcMask/src/X86MAC64/mrcMask
index 1802a23,1802a23..ea19514
Binary files differ

diff --cc src/Tools/mrcImage/mrcMeanYlinePos/src/X86MAC64/.Depend
index 32601d5,32601d5..0931c76
--- 1/src/Tools/mrcImage/mrcMeanYlinePos/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcMeanYlinePos/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcMeanYlinePos/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcMeanYlinePos.o: mrcMeanYlinePos.c /u
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcMeanYlinePos.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcMirrorImageCreate/src/X86MAC64/.Depend
index 92cfa9b,92cfa9b..5b31db4
--- 1/src/Tools/mrcImage/mrcMirrorImageCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcMirrorImageCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcMirrorImageCreate/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcMirrorImageCreate.o: mrcMirrorImageC
    ../inc/../inc/mrcMirrorImageCreate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefCorEstimate/src/X86MAC64/.Depend
index b63c370,b63c370..cea3ce3
--- 1/src/Tools/mrcImage/mrcRefCorEstimate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefCorEstimate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefCorEstimate/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcRefCorEstimate.o: mrcRefCorEstimate.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefCorEstimate.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefCorModify/src/X86MAC64/.Depend
index b17474a,b17474a..6f3a616
--- 1/src/Tools/mrcImage/mrcRefCorModify/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefCorModify/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefCorModify/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcRefCorModify.o: mrcRefCorModify.c /u
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefCorModify.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefCoreGet/src/X86MAC64/.Depend
index 18ff5c7,18ff5c7..e3b3869
--- 1/src/Tools/mrcImage/mrcRefCoreGet/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefCoreGet/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefCoreGet/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcRefCoreGet.o: mrcRefCoreGet.c /usr/i
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefCoreGet.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefCorrelation/src/X86MAC64/.Depend
index c2a4f8b,c2a4f8b..a1ada9b
--- 1/src/Tools/mrcImage/mrcRefCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefCorrelation/src/X86MAC64/.Depend
@@@ -121,12 -121,12 +121,12 @@@ mrcRefCorrelation.o: mrcRefCorrelation.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefCorrelation.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Random.h /usr/include/time.h \
--  /usr/include/_structs.h /usr/include/sys/_structs.h \
--  /usr/include/sys/_types/_timespec.h /usr/include/sys/_types/_clock_t.h \
--  /usr/include/sys/_types/_time_t.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Random.h \
++  /usr/include/time.h /usr/include/_structs.h \
++  /usr/include/sys/_structs.h /usr/include/sys/_types/_timespec.h \
++  /usr/include/sys/_types/_clock_t.h /usr/include/sys/_types/_time_t.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefCorrelationConv/src/X86MAC64/.Depend
index 6987570,6987570..02469a1
--- 1/src/Tools/mrcImage/mrcRefCorrelationConv/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefCorrelationConv/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefCorrelationConv/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcRefCorrelationConv.o: mrcRefCorrelat
    ../inc/../inc/mrcRefCorrelationConv.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefEstimate/src/X86MAC64/.Depend
index 3ed6ac9,3ed6ac9..5007559
--- 1/src/Tools/mrcImage/mrcRefEstimate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefEstimate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefEstimate/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcRefEstimate.o: mrcRefEstimate.c /usr
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefEstimate.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefFFTConvert/src/X86MAC64/.Depend
index efb1890,efb1890..b9a3dee
--- 1/src/Tools/mrcImage/mrcRefFFTConvert/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefFFTConvert/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefFFTConvert/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcRefFFTConvert.o: mrcRefFFTConvert.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefFFTConvert.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcRefFFTConvert/src/X86MAC64/mrcRefFFTConvert
index beaec35,beaec35..9cdc00f
Binary files differ

diff --cc src/Tools/mrcImage/mrcRefHeaderCreate/src/X86MAC64/.Depend
index 02b8a21,02b8a21..c131acc
--- 1/src/Tools/mrcImage/mrcRefHeaderCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefHeaderCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefHeaderCreate/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcRefHeaderCreate.o: mrcRefHeaderCreat
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefHeaderCreate.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefHighPassFilter/src/X86MAC64/.Depend
index 26ab70c,26ab70c..bed191f
--- 1/src/Tools/mrcImage/mrcRefHighPassFilter/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefHighPassFilter/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefHighPassFilter/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcRefHighPassFilter.o: mrcRefHighPassF
    ../inc/../inc/mrcRefHighPassFilter.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefHighPassFilter/src/X86MAC64/mrcRefHighPassFilter
index db78882,db78882..5d6712b
Binary files differ

diff --cc src/Tools/mrcImage/mrcRefImageCorrelation/src/X86MAC64/.Depend
index 1daf681,1daf681..deed6e6
--- 1/src/Tools/mrcImage/mrcRefImageCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefImageCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImageCorrelation/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcRefImageCorrelation.o: mrcRefImageCo
    ../inc/../inc/mrcRefImageCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86MAC64/.Depend
index 94f6b4b,94f6b4b..7e65ee8
--- 1/src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImageOmegaCorrelation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcRefImageOmegaCorrelation.o: mrcRefIm
    ../inc/../inc/mrcRefImageOmegaCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcRefImagepwzCorEstimate/src/X86MAC64/.Depend
index 9940fea,9940fea..e3ed1b1
--- 1/src/Tools/mrcImage/mrcRefImagepwzCorEstimate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefImagepwzCorEstimate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorEstimate/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcRefImagepwzCorEstimate.o: mrcRefImag
    ../inc/../inc/mrcRefImagepwzCorEstimate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/mrcImagefuncmin.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcRefImagepwzCorModify/src/X86MAC64/.Depend
index affdc01,affdc01..03e2ccf
--- 1/src/Tools/mrcImage/mrcRefImagepwzCorModify/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefImagepwzCorModify/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorModify/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcRefImagepwzCorModify.o: mrcRefImagep
    ../inc/../inc/mrcRefImagepwzCorModify.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/X86MAC64/.Depend
index 1711bad,1711bad..4abb23c
--- 1/src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcRefImagepwzCorPeakFind.o: mrcRefImag
    ../inc/../inc/mrcRefImagepwzCorPeakFind.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/mrcImagefuncmin.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcRefImagepwzCorPeakFind/src/X86MAC64/mrcRefImagepwzCorPeakFind
index 39f2668,39f2668..1d71dc9
Binary files differ

diff --cc src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/X86MAC64/.Depend
index 304fa2e,304fa2e..2e4737b
--- 1/src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcRefImagepwzCorSmoothing.o: mrcRefIma
    ../inc/../inc/mrcRefImagepwzCorSmoothing.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefImagepwzCorSmoothing/src/X86MAC64/mrcRefImagepwzCorSmoothing
index 45dc919,45dc919..8622914
Binary files differ

diff --cc src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/X86MAC64/.Depend
index bf0241d,bf0241d..299f84e
--- 1/src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcRefImagepwzCorrelation.o: mrcRefImag
    ../inc/../inc/mrcRefImagepwzCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefImagepwzCorrelation/src/X86MAC64/mrcRefImagepwzCorrelation
index f5ce80e,f5ce80e..30b8b47
Binary files differ

diff --cc src/Tools/mrcImage/mrcRefImagexaFit/src/X86MAC64/.Depend
index 52a4ab4,52a4ab4..3f8d46b
--- 1/src/Tools/mrcImage/mrcRefImagexaFit/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefImagexaFit/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefImagexaFit/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcRefImagexaFit.o: mrcRefImagexaFit.c 
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefImagexaFit.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/mrcImagefuncmin.h \
    /Users/tacyas/Eos/include/nr2.h

diff --cc src/Tools/mrcImage/mrcRefLowPassFilter/src/X86MAC64/.Depend
index 0c2d64e,0c2d64e..a1b029b
--- 1/src/Tools/mrcImage/mrcRefLowPassFilter/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefLowPassFilter/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefLowPassFilter/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcRefLowPassFilter.o: mrcRefLowPassFil
    ../inc/../inc/mrcRefLowPassFilter.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefLowPassFilter/src/X86MAC64/mrcRefLowPassFilter
index 144d1f1,144d1f1..79ccfc7
Binary files differ

diff --cc src/Tools/mrcImage/mrcRefNoiseAdd/src/X86MAC64/.Depend
index 40a4c91,40a4c91..ea43f67
--- 1/src/Tools/mrcImage/mrcRefNoiseAdd/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefNoiseAdd/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefNoiseAdd/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcRefNoiseAdd.o: mrcRefNoiseAdd.c /usr
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefNoiseAdd.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h \
    /Users/tacyas/Eos/include/Random.h /usr/include/time.h \
    /usr/include/_structs.h /usr/include/sys/_structs.h \

diff --cc src/Tools/mrcImage/mrcRefNormalizing/src/X86MAC64/.Depend
index 3f58d66,3f58d66..16e96bd
--- 1/src/Tools/mrcImage/mrcRefNormalizing/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefNormalizing/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefNormalizing/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcRefNormalizing.o: mrcRefNormalizing.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefNormalizing.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefPhaseImageCreate/src/X86MAC64/.Depend
index f48b377,f48b377..56f84ef
--- 1/src/Tools/mrcImage/mrcRefPhaseImageCreate/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefPhaseImageCreate/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefPhaseImageCreate/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcRefPhaseImageCreate.o: mrcRefPhaseIm
    ../inc/../inc/mrcRefPhaseImageCreate.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefPhaseImageCreate/src/X86MAC64/mrcRefPhaseImageCreate
index 19707e8,19707e8..ab35618
Binary files differ

diff --cc src/Tools/mrcImage/mrcRefSmoothing/src/X86MAC64/.Depend
index f26b7e0,f26b7e0..f5ff23b
--- 1/src/Tools/mrcImage/mrcRefSmoothing/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefSmoothing/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefSmoothing/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcRefSmoothing.o: mrcRefSmoothing.c /u
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcRefSmoothing.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcRefz1ImageCorrelation/src/X86MAC64/.Depend
index 6e2b3ca,6e2b3ca..f5e4b61
--- 1/src/Tools/mrcImage/mrcRefz1ImageCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcRefz1ImageCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcRefz1ImageCorrelation/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcRefz1ImageCorrelation.o: mrcRefz1Ima
    ../inc/../inc/mrcRefz1ImageCorrelation.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcRefUtil.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcSinogramFET/src/X86MAC64/.Depend
index 0712b43,0712b43..d74f3f6
--- 1/src/Tools/mrcImage/mrcSinogramFET/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcSinogramFET/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFET/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ mrcSinogramFET.o: mrcSinogramFET.c /usr
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/mrcSinogramFET.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcSinogramFET.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcSinogramFET/src/X86MAC64/mrcSinogramFET
index 04e68c9,04e68c9..2499b4a
Binary files differ

diff --cc src/Tools/mrcImage/mrcSinogramFETcalcSDforNormalize/src/X86MAC64/.Depend
index b38832b,b38832b..3291c9b
--- 1/src/Tools/mrcImage/mrcSinogramFETcalcSDforNormalize/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcSinogramFETcalcSDforNormalize/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETcalcSDforNormalize/src/X86MAC64/.Depend
@@@ -127,8 -127,8 +127,9 @@@ mrcSinogramFETcalcSDforNormalize.o: mrc
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcSinogramFETcalcWeight/src/X86MAC64/.Depend
index 847e51a,847e51a..63dedf5
--- 1/src/Tools/mrcImage/mrcSinogramFETcalcWeight/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcSinogramFETcalcWeight/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETcalcWeight/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcSinogramFETcalcWeight.o: mrcSinogram
    ../inc/../inc/mrcSinogramFETcalcWeight.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcSinogramFETcalcWeight.h \
    /Users/tacyas/Eos/include/lmrcSinogramFET.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/mrcImage/mrcSinogramFETcorrelationMap/src/X86MAC64/.Depend
index 5f23c8b,5f23c8b..acc338a
--- 1/src/Tools/mrcImage/mrcSinogramFETcorrelationMap/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcSinogramFETcorrelationMap/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETcorrelationMap/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcSinogramFETcorrelationMap.o: mrcSino
    ../inc/../inc/mrcSinogramFETcorrelationMap.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcSinogramFETcorrelationMap.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcSinogramFETcorrelationMap/src/X86MAC64/mrcSinogramFETcorrelationMap
index e66887e,e66887e..0175694
Binary files differ

diff --cc src/Tools/mrcImage/mrcSinogramFETnormalizedMap/src/X86MAC64/.Depend
index 9c7a98e,9c7a98e..34199aa
--- 1/src/Tools/mrcImage/mrcSinogramFETnormalizedMap/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcSinogramFETnormalizedMap/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETnormalizedMap/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcSinogramFETnormalizedMap.o: mrcSinog
    ../inc/../inc/mrcSinogramFETnormalizedMap.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcSinogramFETnormalizedMap.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcSinogramFETnormalizedMap/src/X86MAC64/mrcSinogramFETnormalizedMap
index 63a267e,63a267e..9371903
Binary files differ

diff --cc src/Tools/mrcImage/mrcSinogramFETreferredCorrelation/src/X86MAC64/.Depend
index 019bcbd,019bcbd..44a0b3b
--- 1/src/Tools/mrcImage/mrcSinogramFETreferredCorrelation/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcSinogramFETreferredCorrelation/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETreferredCorrelation/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ mrcSinogramFETreferredCorrelation.o: mr
    /Users/tacyas/Eos/include/lmrcSinogramFETreferredCorrelation.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/X86MAC64/.Depend
index 012232c,012232c..cf2e825
--- 1/src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/X86MAC64/.Depend
--- 2/src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/X86MAC64/.Depend
+++ b/src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcSinogramFETsmoothParameterMatching.o
    ../inc/../inc/mrcSinogramFETsmoothParameterMatching.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcSinogramFETsmoothParameterMatching.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/mrcImage/mrcSinogramFETsmoothParameterMatching/src/X86MAC64/mrcSinogramFETsmoothParameterMatching
index cfb5e9e,cfb5e9e..f2d961b
Binary files differ

diff --cc src/Tools/pdbUtil/pdb2mrc2d/src/X86MAC64/.Depend
index 2ae553c,2ae553c..f5ce1a4
--- 1/src/Tools/pdbUtil/pdb2mrc2d/src/X86MAC64/.Depend
--- 2/src/Tools/pdbUtil/pdb2mrc2d/src/X86MAC64/.Depend
+++ b/src/Tools/pdbUtil/pdb2mrc2d/src/X86MAC64/.Depend
@@@ -120,10 -120,10 +120,10 @@@ pdb2mrc2d.o: pdb2mrc2d.c /usr/include/s
    /Users/tacyas/Eos/include/string.h /usr/include/math.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  ../inc/config.h ../inc/../inc/pdb2mrc2d.h \
--  /Users/tacyas/Eos/include/pdbFile.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h ../inc/config.h \
++  ../inc/../inc/pdb2mrc2d.h /Users/tacyas/Eos/include/pdbFile.h \
    /Users/tacyas/Eos/include/lpdb2mrcInfo.h \
    /Users/tacyas/Eos/include/Map2D.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/pdbUtil/pdb2mrc2dWithCTF/src/X86MAC64/.Depend
index 922d8ca,922d8ca..a0274d3
--- 1/src/Tools/pdbUtil/pdb2mrc2dWithCTF/src/X86MAC64/.Depend
--- 2/src/Tools/pdbUtil/pdb2mrc2dWithCTF/src/X86MAC64/.Depend
+++ b/src/Tools/pdbUtil/pdb2mrc2dWithCTF/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ pdb2mrc2dWithCTF.o: pdb2mrc2dWithCTF.c 
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h \
    /Users/tacyas/Eos/include/lpdb2mrcInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/pdbUtil/pdbAtomSection/src/X86MAC64/.Depend
index 250fe07,250fe07..f1f5a5b
--- 1/src/Tools/pdbUtil/pdbAtomSection/src/X86MAC64/.Depend
--- 2/src/Tools/pdbUtil/pdbAtomSection/src/X86MAC64/.Depend
+++ b/src/Tools/pdbUtil/pdbAtomSection/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ pdbAtomSection.o: pdbAtomSection.c /usr
    /Users/tacyas/Eos/include/string.h /usr/include/math.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \

diff --cc src/Tools/pdbUtil/pdbHomologySearch/src/X86MAC64/.Depend
index 2c4739e,2c4739e..56c1b55
--- 1/src/Tools/pdbUtil/pdbHomologySearch/src/X86MAC64/.Depend
--- 2/src/Tools/pdbUtil/pdbHomologySearch/src/X86MAC64/.Depend
+++ b/src/Tools/pdbUtil/pdbHomologySearch/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ pdbHomologySearch.o: pdbHomologySearch.
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/pdbHomologySearch.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/pdbUtil/pdbRhoFit/src/X86MAC64/.Depend
index ae535e6,ae535e6..3486f24
--- 1/src/Tools/pdbUtil/pdbRhoFit/src/X86MAC64/.Depend
--- 2/src/Tools/pdbUtil/pdbRhoFit/src/X86MAC64/.Depend
+++ b/src/Tools/pdbUtil/pdbRhoFit/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ pdbRhoFit.o: pdbRhoFit.c /usr/include/s
    /usr/include/sys/syslimits.h ../inc/config.h ../inc/../inc/pdbRhoFit.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/pdbUtil/pdbRhoFitTm/src/X86MAC64/.Depend
index ce0a31d,ce0a31d..fc4ceb0
--- 1/src/Tools/pdbUtil/pdbRhoFitTm/src/X86MAC64/.Depend
--- 2/src/Tools/pdbUtil/pdbRhoFitTm/src/X86MAC64/.Depend
+++ b/src/Tools/pdbUtil/pdbRhoFitTm/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ pdbRhoFitTm.o: pdbRhoFitTm.c /usr/inclu
    /usr/include/sys/syslimits.h ../inc/config.h \
    ../inc/../inc/pdbRhoFitTm.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/pdbUtil/pdbShapeFit/src/X86MAC64/.Depend
index 41fab3f,41fab3f..128c5f9
--- 1/src/Tools/pdbUtil/pdbShapeFit/src/X86MAC64/.Depend
--- 2/src/Tools/pdbUtil/pdbShapeFit/src/X86MAC64/.Depend
+++ b/src/Tools/pdbUtil/pdbShapeFit/src/X86MAC64/.Depend
@@@ -120,8 -120,8 +120,9 @@@ pdbShapeFit.o: pdbShapeFit.c /usr/inclu
    /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
    ../inc/../inc/pdbShapeFit.h /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/pdbFile.h \
    /Users/tacyas/Eos/include/lmrcImageContourSurface.h \
    /Users/tacyas/Eos/include/lpdbSurface.h \

diff --cc src/Tools/pdbUtil/pdbTrans/src/X86MAC64/.Depend
index e5567b2,e5567b2..57cab97
--- 1/src/Tools/pdbUtil/pdbTrans/src/X86MAC64/.Depend
--- 2/src/Tools/pdbUtil/pdbTrans/src/X86MAC64/.Depend
+++ b/src/Tools/pdbUtil/pdbTrans/src/X86MAC64/.Depend
@@@ -123,7 -123,7 +123,8 @@@ pdbTrans.o: pdbTrans.c /usr/include/std
    /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h
++  /Users/tacyas/Eos/include/ctfInfo.h \
++  /Users/tacyas/Eos/include/eosCuda.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/pickup/mrcImageNeuralNetParticleLearning/src/X86MAC64/.Depend
index 4da641f,4da641f..b74c3e9
--- 1/src/Tools/pickup/mrcImageNeuralNetParticleLearning/src/X86MAC64/.Depend
--- 2/src/Tools/pickup/mrcImageNeuralNetParticleLearning/src/X86MAC64/.Depend
+++ b/src/Tools/pickup/mrcImageNeuralNetParticleLearning/src/X86MAC64/.Depend
@@@ -127,9 -127,9 +127,9 @@@ mrcImageNeuralNetParticleLearning.o: mr
    ../inc/config.h ../inc/../inc/mrcImageNeuralNetParticleLearning.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
@@@ -177,9 -177,9 +177,9 @@@ test.o: test.c /usr/include/stdio.h /us
    ../inc/config.h ../inc/../inc/mrcImageNeuralNetParticleLearning.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \

diff --cc src/Tools/random/randomNormalGet/src/X86MAC64/.Depend
index 80505b8,80505b8..d89b869
--- 1/src/Tools/random/randomNormalGet/src/X86MAC64/.Depend
--- 2/src/Tools/random/randomNormalGet/src/X86MAC64/.Depend
+++ b/src/Tools/random/randomNormalGet/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ randomNormalGet.o: randomNormalGet.c /u
    /usr/include/sys/_types/_clock_t.h /usr/include/sys/_types/_time_t.h \
    /Users/tacyas/Eos/include/mrcImage.h \
    /Users/tacyas/Eos/include/genUtil.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/CheckCommonLineData/src/X86MAC64/.Depend
index fc87c7d,fc87c7d..028da01
--- 1/src/Tools/rec3d/CheckCommonLineData/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/CheckCommonLineData/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/CheckCommonLineData/src/X86MAC64/.Depend
@@@ -40,8 -40,8 +40,9 @@@ CheckCommonLineData.o: CheckCommonLineD
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lCommonLineCalculation.h
  argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/rec3d/EvaluateCorrelationMapwithCommonLine/src/X86MAC64/.Depend
index 815fd05,815fd05..2c7f9d1
--- 1/src/Tools/rec3d/EvaluateCorrelationMapwithCommonLine/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/EvaluateCorrelationMapwithCommonLine/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/EvaluateCorrelationMapwithCommonLine/src/X86MAC64/.Depend
@@@ -39,8 -39,8 +39,9 @@@ EvaluateCorrelationMapwithCommonLine.o
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lEvaluateCorrelationMapwithCommonLine.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/EvaluateCorrelationMapwithCommonLine/src/X86MAC64/EvaluateCorrelationMapwithCommonLine
index b53de0a,b53de0a..9a43e9a
Binary files differ

diff --cc src/Tools/rec3d/FETOrientationSearchByAnnealing/src/X86MAC64/.Depend
index 39a5bde,39a5bde..619634a
--- 1/src/Tools/rec3d/FETOrientationSearchByAnnealing/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/FETOrientationSearchByAnnealing/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/FETOrientationSearchByAnnealing/src/X86MAC64/.Depend
@@@ -39,8 -39,8 +39,9 @@@ FETOrientationSearchByAnnealing.o: FETO
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lFETOrientationSearchByAnnealing.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lCommonLineCalculation.h
  argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/rec3d/FETOrientationSearchByFeatureAlignment/src/X86MAC64/.Depend
index 969a17b,969a17b..fc3b74a
--- 1/src/Tools/rec3d/FETOrientationSearchByFeatureAlignment/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/FETOrientationSearchByFeatureAlignment/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/FETOrientationSearchByFeatureAlignment/src/X86MAC64/.Depend
@@@ -44,8 -44,8 +44,9 @@@ FETOrientationSearchByFeatureAlignment.
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/File.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcSinogramFET.h \
    /Users/tacyas/Eos/include/lFETmapOrientationSearchBySimultaneousFitting.h
  argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \

diff --cc src/Tools/rec3d/FETOrientationSearchByFeatureAlignment/src/X86MAC64/FETOrientationSearchByFeatureAlignment
index 7f0d975,7f0d975..03c8404
Binary files differ

diff --cc src/Tools/rec3d/FETmapOrientationSearchBySimultaneousFitting/src/X86MAC64/.Depend
index e297d6e,e297d6e..3b0ac51
--- 1/src/Tools/rec3d/FETmapOrientationSearchBySimultaneousFitting/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/FETmapOrientationSearchBySimultaneousFitting/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/FETmapOrientationSearchBySimultaneousFitting/src/X86MAC64/.Depend
@@@ -39,8 -39,8 +39,9 @@@ FETmapOrientationSearchBySimultaneousFi
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lFETmapOrientationSearchBySimultaneousFitting.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/FETmapOrientationSearchBySimultaneousFitting/src/X86MAC64/FETmapOrientationSearchBySimultaneousFitting
index a8a915e,a8a915e..b2c9933
Binary files differ

diff --cc src/Tools/rec3d/FETsmallMapSetCreate_forSimultaneousMinimization/src/X86MAC64/.Depend
index 028e706,028e706..d6afbba
--- 1/src/Tools/rec3d/FETsmallMapSetCreate_forSimultaneousMinimization/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/FETsmallMapSetCreate_forSimultaneousMinimization/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/FETsmallMapSetCreate_forSimultaneousMinimization/src/X86MAC64/.Depend
@@@ -40,8 -40,8 +40,9 @@@ FETsmallMapSetCreate_forSimultaneousMin
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lFETsmallMapSetCreate_forSimultaneousMinimization.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/WeightCalculationOfCommonLineSearch/src/X86MAC64/.Depend
index b25dba7,b25dba7..c53eaa9
--- 1/src/Tools/rec3d/WeightCalculationOfCommonLineSearch/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/WeightCalculationOfCommonLineSearch/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/WeightCalculationOfCommonLineSearch/src/X86MAC64/.Depend
@@@ -41,8 -41,8 +41,9 @@@ WeightCalculationOfCommonLineSearch.o: 
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageSinogram.h \
    /Users/tacyas/Eos/include/lmrcImageFileListAndEulerAngleDataRead.h \
    /Users/tacyas/Eos/include/lCommonLineCalculation.h

diff --cc src/Tools/rec3d/WeightCalculationOfCommonLineSearch/src/X86MAC64/WeightCalculationOfCommonLineSearch
index eff928c,eff928c..be8cf95
Binary files differ

diff --cc src/Tools/rec3d/WeightCalculationOfCommonLineSearchByAllSinogram/src/X86MAC64/.Depend
index 3607e39,3607e39..ec2c5a7
--- 1/src/Tools/rec3d/WeightCalculationOfCommonLineSearchByAllSinogram/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/WeightCalculationOfCommonLineSearchByAllSinogram/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/WeightCalculationOfCommonLineSearchByAllSinogram/src/X86MAC64/.Depend
@@@ -42,8 -42,8 +42,9 @@@ WeightCalculationOfCommonLineSearchByAl
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/llExtract/src/X86MAC64/.Depend
index ff98bcf,ff98bcf..8f8b9f1
--- 1/src/Tools/rec3d/llExtract/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/llExtract/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/llExtract/src/X86MAC64/.Depend
@@@ -124,9 -124,9 +124,9 @@@ llExtract.o: llExtract.c /usr/include/s
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/llData.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/llData.h \
    /Users/tacyas/Eos/include/lllExtract.h \
    /Users/tacyas/Eos/include/lllDataFit.h \
    /Users/tacyas/Eos/include/lllDatarMaxLimit.h \

diff --cc src/Tools/rec3d/llExtractCtrlFileCreate/src/X86MAC64/.Depend
index 2af9e7a,2af9e7a..9f25dcb
--- 1/src/Tools/rec3d/llExtractCtrlFileCreate/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/llExtractCtrlFileCreate/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/llExtractCtrlFileCreate/src/X86MAC64/.Depend
@@@ -126,9 -126,9 +126,9 @@@ llExtractCtrlFileCreate.o: llExtractCtr
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/llData.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/llData.h \
    /Users/tacyas/Eos/include/lllExtractdYEstimate.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/rec3d/llExtractWithLayerSeparation/src/X86MAC64/.Depend
index 2d298f8,2d298f8..7242441
--- 1/src/Tools/rec3d/llExtractWithLayerSeparation/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/llExtractWithLayerSeparation/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/llExtractWithLayerSeparation/src/X86MAC64/.Depend
@@@ -128,9 -128,9 +128,9 @@@ llExtractWithLayerSeparation.o: llExtra
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/llData.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/llData.h \
    /Users/tacyas/Eos/include/lllExtract.h \
    /Users/tacyas/Eos/include/lllDataFit.h \
    /Users/tacyas/Eos/include/lllDatarMaxLimit.h \

diff --cc src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreate/src/X86MAC64/.Depend
index 47879a9,47879a9..5e38c21
--- 1/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreate/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreate/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/llExtractWithLayerSeparationCtrlFileCreate/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,8 @@@ llExtractWithLayerSeparationCtrlFileCre
    /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/llData.h \
    /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/llExtractWithLayerSeparationFilamentInfo/src/X86MAC64/.Depend
index 25eeb2a,25eeb2a..8194d79
--- 1/src/Tools/rec3d/llExtractWithLayerSeparationFilamentInfo/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/llExtractWithLayerSeparationFilamentInfo/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/llExtractWithLayerSeparationFilamentInfo/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ llExtractWithLayerSeparationFilamentInf
    ../inc/../inc/llExtractWithLayerSeparationFilamentInfo.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lllExtractdYEstimate.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/rec3d/llExtractWithLayerSeparationSingle/src/X86MAC64/.Depend
index 5f933d6,5f933d6..6788cdb
--- 1/src/Tools/rec3d/llExtractWithLayerSeparationSingle/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/llExtractWithLayerSeparationSingle/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/llExtractWithLayerSeparationSingle/src/X86MAC64/.Depend
@@@ -124,9 -124,9 +124,9 @@@ llExtractWithLayerSeparationSingle.o: 
    ../inc/../inc/llExtractWithLayerSeparationSingle.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/llData.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/llData.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/ltlg2mrc/src/X86MAC64/.Depend
index beced3e,beced3e..3ae2eba
--- 1/src/Tools/rec3d/ltlg2mrc/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/ltlg2mrc/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/ltlg2mrc/src/X86MAC64/.Depend
@@@ -126,8 -126,8 +126,9 @@@ ltlg2mrc.o: ltlg2mrc.c /usr/include/std
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/File.h \
    /Users/tacyas/Eos/include/ltlgData.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/marker2Dto3DEstimator/src/X86MAC64/marker2Dto3DEstimator
index 41e8c62,41e8c62..9ffbf78
Binary files differ

diff --cc src/Tools/rec3d/mrc2Dto3D/src/X86MAC64/.Depend
index d813735,d813735..d6641a6
--- 1/src/Tools/rec3d/mrc2Dto3D/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/mrc2Dto3D/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/mrc2Dto3D/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrc2Dto3D.o: mrc2Dto3D.c /usr/include/s
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/eosPThread.h /usr/include/pthread.h \
    /usr/include/pthread_impl.h /usr/include/sched.h /usr/include/time.h \
    /usr/include/_structs.h /usr/include/sys/_structs.h \

diff --cc src/Tools/rec3d/mrcImageCommonLineSearch/src/X86MAC64/.Depend
index 9f8a456,9f8a456..62848f2
--- 1/src/Tools/rec3d/mrcImageCommonLineSearch/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/mrcImageCommonLineSearch/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/mrcImageCommonLineSearch/src/X86MAC64/.Depend
@@@ -125,8 -125,8 +125,9 @@@ mrcImageCommonLineSearch.o: mrcImageCom
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/lmrcImageCommonLine.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/mrcImageCommonLineSearch/src/X86MAC64/mrcImageCommonLineSearch
index fa6a07a,fa6a07a..8dfb5b9
Binary files differ

diff --cc src/Tools/rec3d/mrcImageInverseRadonTransform/src/X86MAC64/.Depend
index 7ea66d5,7ea66d5..de8f12c
--- 1/src/Tools/rec3d/mrcImageInverseRadonTransform/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/mrcImageInverseRadonTransform/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/mrcImageInverseRadonTransform/src/X86MAC64/.Depend
@@@ -127,8 -127,8 +127,9 @@@ mrcImageInverseRadonTransform.o: mrcIma
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/mrcImageInverseRadonTransform/src/X86MAC64/mrcImageInverseRadonTransform
index 3880173,3880173..1ed187c
Binary files differ

diff --cc src/Tools/rec3d/mrcImageOrientationSearch/src/X86MAC64/.Depend
index c882fbc,c882fbc..a15648e
--- 1/src/Tools/rec3d/mrcImageOrientationSearch/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/mrcImageOrientationSearch/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/mrcImageOrientationSearch/src/X86MAC64/.Depend
@@@ -124,9 -124,9 +124,9 @@@ mrcImageOrientationSearch.o: mrcImageOr
    ../inc/../inc/mrcImageOrientationSearch.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
--  /Users/tacyas/Eos/include/Memory.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Memory.h \
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include/limits.h \
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \

diff --cc src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/X86MAC64/.Depend
index 6bfd75a,6bfd75a..2977765
--- 1/src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/X86MAC64/.Depend
@@@ -132,8 -132,8 +132,9 @@@ mrcImageOrientationSearchBySimultaneous
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageOrientationSearchBySimultaneousMinimization.h \
    /Users/tacyas/Eos/include/lCommonLineCalculation.h \
    /Users/tacyas/Eos/include/lmrcImageSinogramFFT.h

diff --cc src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/X86MAC64/mrcImageOrientationSearchBySimultaneousMinimization
index 6c51791,6c51791..2f3e6e5
Binary files differ

diff --cc src/Tools/rec3d/mrcImageRadonTransform/src/X86MAC64/.Depend
index 1dd277c,1dd277c..c19053e
--- 1/src/Tools/rec3d/mrcImageRadonTransform/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/mrcImageRadonTransform/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/mrcImageRadonTransform/src/X86MAC64/.Depend
@@@ -123,8 -123,8 +123,9 @@@ mrcImageRadonTransform.o: mrcImageRadon
    ../inc/../inc/mrcImageRadonTransform.h \
    /Users/tacyas/Eos/include/genUtil.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/rec3d/mrcRadon2Dto3D/src/X86MAC64/.Depend
index a84966c,a84966c..498052e
--- 1/src/Tools/rec3d/mrcRadon2Dto3D/src/X86MAC64/.Depend
--- 2/src/Tools/rec3d/mrcRadon2Dto3D/src/X86MAC64/.Depend
+++ b/src/Tools/rec3d/mrcRadon2Dto3D/src/X86MAC64/.Depend
@@@ -124,8 -124,8 +124,9 @@@ mrcRadon2Dto3D.o: mrcRadon2Dto3D.c /usr
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h \
    /Users/tacyas/Eos/include/lmrcImageRhoFiltering.h
  usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \

diff --cc src/Tools/simulation/energyTransferModelResultCheck/src/X86MAC64/.Depend
index 4844835,4844835..8884784
--- 1/src/Tools/simulation/energyTransferModelResultCheck/src/X86MAC64/.Depend
--- 2/src/Tools/simulation/energyTransferModelResultCheck/src/X86MAC64/.Depend
+++ b/src/Tools/simulation/energyTransferModelResultCheck/src/X86MAC64/.Depend
@@@ -85,8 -85,8 +85,9 @@@ energyTransferModelResultCheck.o: energ
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/lFRET.h \
    /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h
  init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
    /usr/include/sys/_symbol_aliasing.h \
    /usr/include/sys/_posix_availability.h /usr/include/Availability.h \

diff --cc src/Tools/simulation/energyTransferModelResultCheck/src/X86MAC64/energyTransferModelResultCheck
index be1f024,be1f024..f6ebff5
Binary files differ

diff --cc src/Tools/vectorImage/vectorImageNearestNeighborMethod/src/X86MAC64/.Depend
index 2f4b0f2,2f4b0f2..d3e1f22
--- 1/src/Tools/vectorImage/vectorImageNearestNeighborMethod/src/X86MAC64/.Depend
--- 2/src/Tools/vectorImage/vectorImageNearestNeighborMethod/src/X86MAC64/.Depend
+++ b/src/Tools/vectorImage/vectorImageNearestNeighborMethod/src/X86MAC64/.Depend
@@@ -200,5 -200,5 +200,6 @@@ vectorImageNearestNeighborMethod.o: vec
    /usr/include/limits.h /usr/include/machine/limits.h \
    /usr/include/i386/limits.h /usr/include/i386/_limits.h \
    /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/mrcImage.h \
--  /Users/tacyas/Eos/include/ctfInfo.h /Users/tacyas/Eos/include/Vector.h \
--  /Users/tacyas/Eos/include/Matrix3D.h /Users/tacyas/Eos/include/Array.h
++  /Users/tacyas/Eos/include/Matrix3D.h \
++  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
++  /Users/tacyas/Eos/include/ctfInfo.h