with '#' will be ignored, and an empty message aborts the commit.
On branch master
Your branch is behind 'origin/master' by 3 commits, and can be fast-forwarded.
(use "git pull" to update your local branch)
Changes to be committed:
modified: .Source
modified: .Source.org
deleted: Eos
modified: bin/wish/Display2/tclIndex
modified: src/Objects/DataExpress/Contour/doc/Contour.html
modified: src/Objects/DataExpress/TclTk/doc/TclTk.html
modified: src/Objects/DataExpress/avsFile/doc/avsFile.html
modified: src/Objects/DataExpress/eosOpenGL/doc/eosOpenGL.html
modified: src/Objects/DataExpress/gifFile/doc/gifFile.html
modified: src/Objects/DataExpress/pngFile/doc/pngFile.html
modified: src/Objects/DataExpress/psFile/doc/psFile.html
modified: src/Objects/DataManip/bildFile/doc/bildFile.html
modified: src/Objects/DataManip/bmpFile/doc/bmpFile.html
modified: src/Objects/DataManip/ctfInfo/doc/ctfInfo.html
modified: src/Objects/DataManip/dmFile/doc/dmFile.html
modified: src/Objects/DataManip/dsn6File/doc/dsn6File.html
modified: src/Objects/DataManip/emData/doc/emData.html
modified: src/Objects/DataManip/khorosData/doc/khorosData.html
modified: src/Objects/DataManip/largeIP/doc/largeIP.html
modified: src/Objects/DataManip/llData/doc/llData.html
modified: src/Objects/DataManip/ltlgData/doc/ltlgData.html
modified: src/Objects/DataManip/mapFile/doc/mapFile.html
modified: src/Objects/DataManip/mrcImage/doc/mrcImage.html
modified: src/Objects/DataManip/mrcImageShape/doc/mrcImageShape.html
modified: src/Objects/DataManip/pdbFile/doc/pdbFile.html
modified: src/Objects/DataManip/rigakuImage/doc/rigakuImage.html
modified: src/Objects/DataManip/tgaFile/doc/tgaFile.html
modified: src/Objects/DataManip/transform/doc/transform.html
modified: src/Objects/General/Cluster/doc/Cluster.html
modified: src/Objects/General/Crystal/doc/Crystal.html
modified: src/Objects/General/Map2D/doc/Map2D.html
modified: src/Objects/General/Matrix3D/doc/Matrix3D.html
modified: src/Objects/General/Memory/doc/Memory.html
modified: src/Objects/General/PVM/doc/PVM.html
modified: src/Objects/General/Random/doc/Random.html
modified: src/Objects/General/Socket/doc/Socket.html
modified: src/Objects/General/SpecialNumber/doc/SpecialNumber.html
modified: src/Objects/General/Vector/doc/Vector.html
modified: src/Objects/General/eosBayes/doc/eosBayes.html
modified: src/Objects/General/eosFunc/doc/eosFunc.html
modified: src/Objects/General/eosMath/doc/eosMath.html
modified: src/Objects/General/eosPThread/doc/eosPThread.html
modified: src/Objects/General/eosPoint/doc/eosPoint.html
modified: src/Tools/.Source
modified: src/Tools/.Source.org
modified: src/Tools/Config/Define.inc
modified: src/Tools/DCDFile/dcdCompareCA/src/dcdCompareCA.html
modified: src/Tools/DCDFile/dcdDistanceAtomBetweenAtom/src/dcdDistanceAtomBetweenAtom.html
modified: src/Tools/Integration/Display3/src/Display3.html
modified: src/Tools/Integration/Eos/src/Eos.html
modified: src/Tools/Integration/StereoDisplay/src/StereoDisplay.html
modified: src/Tools/Integration/Visualmake/src/Visualmake.html
modified: src/Tools/Integration/imagesClustering/src/imagesClustering.html
modified: src/Tools/Integration/obj3Don2DImageView/src/obj3Don2DImageView.html
modified: src/Tools/Integration/smolet/src/smolet.html
modified: src/Tools/crystal/crystalGetLatticeVolume/src/crystalGetLatticeVolume.html
modified: src/Tools/crystal/crystalGetReciprocalLattice/src/crystalGetReciprocalLattice.html
modified: src/Tools/ctfInfo/ctfDeterminationByBayes/src/ctfDeterminationByBayes.html
modified: src/Tools/ctfInfo/ctfDeterminationFromPhaseComparison/src/ctfDeterminationFromPhaseComparison.html
modified: src/Tools/ctfInfo/ctfDeterminationFromThonRing/src/ctfDeterminationFromThonRing.html
modified: src/Tools/ctfInfo/ctfFunctionServer/src/ctfFunctionServer.html
modified: src/Tools/ctfInfo/ctfMultiFunction/src/ctfMultiFunction.html
modified: src/Tools/ctfInfo/ctfZeroPoint/src/ctfZeroPoint.html
modified: src/Tools/ctfInfo/defocusDeterminationFromThonRing/src/defocusDeterminationFromThonRing.html
modified: src/Tools/ctfInfo/tiltInfoDetermine/src/tiltInfoDetermine.html
modified: src/Tools/database/homology2PG/src/homology2PG.html
modified: src/Tools/database/pgDataBaseSelectServer/src/pgDataBaseSelectServer.html
modified: src/Tools/database/pgJournalSelect/src/pgJournalSelect.html
modified: src/Tools/database/pgJournalSelectCORBAClient/src/pgJournalSelectCORBAClient.html
modified: src/Tools/database/pgJournalSelectCORBAServer/src/pgJournalSelectCORBAServer.html
modified: src/Tools/database/pgMemoSelectCORBAServer/src/pgMemoSelectCORBAServer.html
modified: src/Tools/database/pgSelect/src/pgSelect.html
modified: src/Tools/eosBayes/eosBayesInit/src/eosBayesInit.html
modified: src/Tools/eosMath/eosMathAverage/src/eosMathAverage.html
modified: src/Tools/eosPoint/eosPointCurvatureInfo/src/eosPointCurvatureInfo.html
modified: src/Tools/eosPoint/eosPointProjector/src/eosPointProjector.html
modified: src/Tools/eosPoint/eosPointRotation/src/eosPointRotation.html
modified: src/Tools/filter/.Source.org
modified: src/Tools/filter/moi2mrc/src/moi2mrc.html
modified: src/Tools/filter/mrc2gif/src/mrc2gif.html
new file: src/Tools/filter/mrc2hdf/src/X86LINUX64
new file: src/Tools/filter/mrc2hdf/src/mrc2hdf.html
modified: src/Tools/filter/mrc2lattice/src/mrc2lattice.html
modified: src/Tools/filter/mrc2pov/src/mrc2pov.html
modified: src/Tools/filter/mrc2viff/src/mrc2viff.html
modified: src/Tools/hf2000/hf2000Init/src/hf2000Init.html
modified: src/Tools/hf2000/hf2000LenzCurrent/src/hf2000LenzCurrent.html
modified: src/Tools/hf2000/hf2000SpecimenPosition/src/hf2000SpecimenPosition.html
modified: src/Tools/khorosTool/khorosFilterGenerate/src/khorosFilterGenerate.html
modified: src/Tools/llData/llDataAxisSearch/src/llDataAxisSearch.html
modified: src/Tools/llData/llDataCTFCompensate/src/llDataCTFCompensate.html
modified: src/Tools/llData/llDataFitServer/src/llDataFitServer.html
modified: src/Tools/llData/llDataMultiCTFCompensation/src/llDataMultiCTFCompensation.html
modified: src/Tools/llData/llDataPrint/src/llDataPrint.html
modified: src/Tools/llData/llDataRotation/src/llDataRotation.html
modified: src/Tools/llData/llDataSeparate/src/llDataSeparate.html
modified: src/Tools/matrix3D/matrix3DEulerAngleTransform/src/matrix3DEulerAngleTransform.html
modified: src/Tools/matrix3D/matrix3DFromEulerAngle/src/matrix3DFromEulerAngle.html
modified: src/Tools/matrix3D/matrix3DInverse/src/matrix3DInverse.html
modified: src/Tools/mrcImage/.Source.org
modified: src/Tools/mrcImage/fft2d/src/fft2d.html
modified: src/Tools/mrcImage/mrc2dsn6/src/mrc2dsn6.html
modified: src/Tools/mrcImage/mrc2hdf/src/mrc2hdf.html
modified: src/Tools/mrcImage/mrcFFTCTFCompensation/src/mrcFFTCTFCompensation.html
modified: src/Tools/mrcImage/mrcFFTCentralSection/src/mrcFFTCentralSection.html
modified: src/Tools/mrcImage/mrcFFTCentralSectionCompare/src/mrcFFTCentralSectionCompare.html
modified: src/Tools/mrcImage/mrcFFTIQEstimation/src/mrcFFTIQEstimation.html
modified: src/Tools/mrcImage/mrcImage1dCutAverage/src/mrcImage1dCutAverage.html
modified: src/Tools/mrcImage/mrcImage3DCTFObservation/src/mrcImage3DCTFObservation.html
modified: src/Tools/mrcImage/mrcImage3DPeakGet/src/mrcImage3DPeakGet.html
modified: src/Tools/mrcImage/mrcImageAutoFilamentExtract/src/mrcImageAutoFilamentExtract.html
modified: src/Tools/mrcImage/mrcImageAutoRotationCorrelationResultPrint/src/mrcImageAutoRotationCorrelationResultPrint.html
modified: src/Tools/mrcImage/mrcImageAutoTriming/src/mrcImageAutoTriming.html
modified: src/Tools/mrcImage/mrcImageBilateralFilter/src/mrcImageBilateralFilter.html
modified: src/Tools/mrcImage/mrcImageCTFCompensation/src/mrcImageCTFCompensation.html
modified: src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/mrcImageCTFCompensationForTiltImage.html
modified: src/Tools/mrcImage/mrcImageChainCodeCalc/src/mrcImageChainCodeCalc.html
modified: src/Tools/mrcImage/mrcImageColoring/src/mrcImageColoring.html
modified: src/Tools/mrcImage/mrcImageConvolution/src/mrcImageConvolution.html
modified: src/Tools/mrcImage/mrcImageCoreImageCalc/src/mrcImageCoreImageCalc.html
modified: src/Tools/mrcImage/mrcImageCorrelationServer/src/mrcImageCorrelationServer.html
modified: src/Tools/mrcImage/mrcImageCorrelationWithCTFCompensation/src/mrcImageCorrelationWithCTFCompensation.html
modified: src/Tools/mrcImage/mrcImageCrystalDeform/src/mrcImageCrystalDeform.html
new file: src/Tools/mrcImage/mrcImageCurl/src/X86LINUX64
modified: src/Tools/mrcImage/mrcImageCutAndSetInArray/src/mrcImageCutAndSetInArray.html
modified: src/Tools/mrcImage/mrcImageDensityInfo/src/mrcImageDensityInfo.html
new file: src/Tools/mrcImage/mrcImageDivergence/src/X86LINUX64
modified: src/Tools/mrcImage/mrcImageEdgeImageGet/src/mrcImageEdgeImageGet.html
modified: src/Tools/mrcImage/mrcImageEnhancementWithFuzzySets/src/mrcImageEnhancementWithFuzzySets.html
modified: src/Tools/mrcImage/mrcImageFFTLayerLineExtraction/src/mrcImageFFTLayerLineExtraction.html
modified: src/Tools/mrcImage/mrcImageFOMCalc.org/src/mrcImageFOMCalc.html
modified: src/Tools/mrcImage/mrcImageFOMCalc/src/mrcImageFOMCalc.html
modified: src/Tools/mrcImage/mrcImageFeatureCalc/src/mrcImageFeatureCalc.html
modified: src/Tools/mrcImage/mrcImageFilamentSearch/src/mrcImageFilamentSearch.html
modified: src/Tools/mrcImage/mrcImageFractalFrourierShellCorrelation/src/mrcImageFractalFrourierShellCorrelation.html
modified: src/Tools/mrcImage/mrcImageGaussSphere/src/mrcImageGaussSphere.html
new file: src/Tools/mrcImage/mrcImageGradient/src/X86LINUX64
modified: src/Tools/mrcImage/mrcImageHelicalConvolution/src/mrcImageHelicalConvolution.html
modified: src/Tools/mrcImage/mrcImageMergeFFT/src/mrcImageMergeFFT.html
modified: src/Tools/mrcImage/mrcImageMultiCTFCompensation/src/mrcImageMultiCTFCompensation.html
modified: src/Tools/mrcImage/mrcImageMultiCTFDetermination/src/mrcImageMultiCTFDetermination.html
modified: src/Tools/mrcImage/mrcImageNLMeansFilter/src/mrcImageNLMeansFilter.html
new file: src/Tools/mrcImage/mrcImageOpticalFlow/src/X86LINUX64
modified: src/Tools/mrcImage/mrcImagePad/src/mrcImagePad.html
modified: src/Tools/mrcImage/mrcImagePanoramaCreate/src/mrcImagePanoramaCreate.html
modified: src/Tools/mrcImage/mrcImagePeakSearch/src/mrcImagePeakSearch.html
modified: src/Tools/mrcImage/mrcImagePerimeterCalc/src/mrcImagePerimeterCalc.html
modified: src/Tools/mrcImage/mrcImagePrint/src/mrcImagePrint.html
modified: src/Tools/mrcImage/mrcImagePrint3D/src/mrcImagePrint3D.html
modified: src/Tools/mrcImage/mrcImagePut3D/src/mrcImagePut3D.html
modified: src/Tools/mrcImage/mrcImageROIs/src/mrcImageROIs.html
modified: src/Tools/mrcImage/mrcImageRadialDistribution/src/mrcImageRadialDistribution.html
modified: src/Tools/mrcImage/mrcImageSNEstimate/src/mrcImageSNEstimate.html
modified: src/Tools/mrcImage/mrcImageShapePCA/src/mrcImageShapePCA.html
modified: src/Tools/mrcImage/mrcImageShapePCAFit/src/mrcImageShapePCAFit.html
modified: src/Tools/mrcImage/mrcImageShapeRelaxation/src/mrcImageShapeRelaxation.html
modified: src/Tools/mrcImage/mrcImageShapeSearch/src/mrcImageShapeSearch.html
modified: src/Tools/mrcImage/mrcImageSimilarityEstimate/src/mrcImageSimilarityEstimate.html
modified: src/Tools/mrcImage/mrcImageSpatialFrequencyFilter/src/mrcImageSpatialFrequencyFilter.html
modified: src/Tools/mrcImage/mrcImageSphereCheck/src/mrcImageSphereCheck.html
new file: src/Tools/mrcImage/mrcImageStreamLine/src/X86LINUX64
modified: src/Tools/mrcImage/mrcImageSuperResolution/src/mrcImageSuperResolution.html
new file: src/Tools/mrcImage/mrcImageSuperResolutionByOpticalFlow/src/X86LINUX64
modified: src/Tools/mrcImage/mrcImageSurfaceAreaCalc/src/mrcImageSurfaceAreaCalc.html
modified: src/Tools/mrcImage/mrcImageTiltAxisSearchHelp/src/mrcImageTiltAxisSearchHelp.html
modified: src/Tools/mrcImage/mrcImageUnbentROI/src/mrcImageUnbentROI.html
modified: src/Tools/mrcImage/mrcImageUnsharpening/src/mrcImageUnsharpening.html
modified: src/Tools/mrcImage/mrcImageVarianceAnalysis/src/mrcImageVarianceAnalysis.html
modified: src/Tools/mrcImage/mrcImageVolumeCalc/src/mrcImageVolumeCalc.html
modified: src/Tools/mrcImage/mrcMultiFFTCentralSectionsSigmaCalc/src/mrcMultiFFTCentralSectionsSigmaCalc.html
copied: src/Tools/ctfInfo/tiltInfoDetermine/src/tiltInfoDetermine.html -> src/Tools/mrcImage/mrcRefNormalizing/src/mrcRefNormalizing.html
modified: src/Tools/mrcImage/mrcView/src/mrcView.html
copied: src/Tools/mrcImage/mrcImageCTFCompensationForTiltImage/src/mrcImageCTFCompensationForTiltImage.html -> src/Tools/openGL/molvieMrcViewer/src/molvieMrcViewer.html
modified: src/Tools/pdbUtil/pdbAtomSection/src/pdbAtomSection.html
modified: src/Tools/pdbUtil/pdbHomologySearch/src/pdbHomologySearch.html
modified: src/Tools/pdbUtil/pdbRhoFit/src/pdbRhoFit.html
modified: src/Tools/pdbUtil/pdbRhoFitTm/src/pdbRhoFitTm.html
modified: src/Tools/pdbUtil/pdbTempFactorSet/src/pdbTempFactorSet.html
modified: src/Tools/pdbUtil/pdbTrans/src/pdbTrans.html
modified: src/Tools/pdbUtil/pdbView/src/pdbView.html
modified: src/Tools/pickup/mrcImageNeuralNetParticleExtraction/src/mrcImageNeuralNetParticleExtraction.html
modified: src/Tools/pickup/mrcImageNeuralNetParticleLearning/src/mrcImageNeuralNetParticleLearning.html
modified: src/Tools/rec3d/CheckCommonLineData/src/CheckCommonLineData.html
modified: src/Tools/rec3d/CheckOfOrientation/src/CheckOfOrientation.html
modified: src/Tools/rec3d/CheckOrientationByDegree/src/CheckOrientationByDegree.html
modified: src/Tools/rec3d/CommonLineCalculation/src/CommonLineCalculation.html
modified: src/Tools/rec3d/LCalculationForOrientationSearch/src/LCalculationForOrientationSearch.html
modified: src/Tools/rec3d/ProjectionDirectionMapCreate/src/ProjectionDirectionMapCreate.html
modified: src/Tools/rec3d/WeightCalculationOfCommonLineSearch/src/WeightCalculationOfCommonLineSearch.html
modified: src/Tools/rec3d/WeightCalculationOfCommonLineSearchByAllSinogram/src/WeightCalculationOfCommonLineSearchByAllSinogram.html
modified: src/Tools/rec3d/calcCommonLine/src/calcCommonLine.html
modified: src/Tools/rec3d/commonLinesSearchByVoting/src/commonLinesSearchByVoting.html
modified: src/Tools/rec3d/ll2ltlg/src/ll2ltlg.html
modified: src/Tools/rec3d/llExtract/src/llExtract.html
modified: src/Tools/rec3d/llExtractWithLayerSeparation/src/llExtractWithLayerSeparation.html
modified: src/Tools/rec3d/llExtractWithLayerSeparationServer/src/llExtractWithLayerSeparationServer.html
modified: src/Tools/rec3d/llExtractWithLayerSeparationSingle/src/llExtractWithLayerSeparationSingle.html
modified: src/Tools/rec3d/ltlg2mrc/src/ltlg2mrc.html
modified: src/Tools/rec3d/ltlg2ps/src/ltlg2ps.html
modified: src/Tools/rec3d/marker2Dto3DEstimator/src/marker2Dto3DEstimator.html
modified: src/Tools/rec3d/mrc2Dto3D/src/mrc2Dto3D.html
modified: src/Tools/rec3d/mrc2Dto3DforVariation/src/mrc2Dto3DforVariation.html
modified: src/Tools/rec3d/mrcImageOrientationSearch/src/mrcImageOrientationSearch.html
modified: src/Tools/rec3d/mrcImageOrientationSearchByHigherSelection/src/mrcImageOrientationSearchByHigherSelection.html
modified: src/Tools/rec3d/mrcImageOrientationSearchByHybridization/src/mrcImageOrientationSearchByHybridization.html
modified: src/Tools/rec3d/mrcImageOrientationSearchBySimultaneousMinimization/src/mrcImageOrientationSearchBySimultaneousMinimization.html
modified: src/Tools/rec3d/mrcRadon2Dto3D/src/mrcRadon2Dto3D.html
modified: src/Tools/simulation/energyTransferModelCheck/src/energyTransferModelCheck.html
modified: src/Tools/simulation/muscleSimulation/src/muscleSimulation.html
SOURCE=\
Integration \
bin \
+data \
env \
hostdepend \
include \
lib \
+optional \
+others \
sbin \
src \
+tutorial \
util \
#LastSource
SOURCE=\
Integration \
bin \
-data \
env \
hostdepend \
include \
lib \
-optional \
-others \
sbin \
src \
-tutorial \
util \
-zephyr \
#LastSource
+++ /dev/null
-/Applications/Eos
\ No newline at end of file
# element name is the name of a command and the value is
# a script that loads the command.
-set auto_index(roiAreaSelectStart) [list source [file join $dir RoiAreaSelect.wish]]
-set auto_index(roiAreaSelectMotion) [list source [file join $dir RoiAreaSelect.wish]]
-set auto_index(roiAreaSelectEnd) [list source [file join $dir RoiAreaSelect.wish]]
-set auto_index(roiAreaSelectOK) [list source [file join $dir RoiAreaSelect.wish]]
-set auto_index(projectionRecreate) [list source [file join $dir ProjectionUtil.wish]]
-set auto_index(projectionCreate) [list source [file join $dir ProjectionUtil.wish]]
-set auto_index(projectionClear) [list source [file join $dir ProjectionUtil.wish]]
-set auto_index(projectionChange) [list source [file join $dir ProjectionUtil.wish]]
+set auto_index(display2BindingSet) [list source [file join $dir Display2Binding.wish]]
+set auto_index(colormapChange) [list source [file join $dir Display2Colormap.wish]]
+set auto_index(display2DesktopSet) [list source [file join $dir Display2Desktop.wish]]
+set auto_index(display2ETCSet) [list source [file join $dir Display2ETCSet.wish]]
+set auto_index(fileOpenWinCreate) [list source [file join $dir Display2File.wish]]
+set auto_index(fileNewWinCreate) [list source [file join $dir Display2File.wish]]
+set auto_index(seqFileOpenWinCreate) [list source [file join $dir Display2File.wish]]
+set auto_index(seqFileNewWinCreate) [list source [file join $dir Display2File.wish]]
set auto_index(fileOpen) [list source [file join $dir Display2Image.wish]]
set auto_index(mainImagePut) [list source [file join $dir Display2Image.wish]]
set auto_index(overviewImagePut) [list source [file join $dir Display2Image.wish]]
-set auto_index(roiAreaFFT) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(splineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(rectangleNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(lineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(pointDistance) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(pointDistance2) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(vectorAngle) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(coordGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(coordGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(dataGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(dataGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(pointSet) [list source [file join $dir RoiAreaUtil.wish]]
-set auto_index(roiAreaZoomIn) [list source [file join $dir RoiAreaZoom.wish]]
-set auto_index(roiAreaZoomOut) [list source [file join $dir RoiAreaZoom.wish]]
-set auto_index(roiAreaZoom) [list source [file join $dir RoiAreaZoom.wish]]
-set auto_index(colormapChange) [list source [file join $dir Display2Colormap.wish]]
-set auto_index(display2SetVar) [list source [file join $dir Display2Init.wish]]
-set auto_index(display2InitVar) [list source [file join $dir Display2Init.wish]]
-set auto_index(display2InitVarSet) [list source [file join $dir Display2Init.wish]]
-set auto_index(diplay2CanvasInit) [list source [file join $dir Display2Init.wish]]
-set auto_index(display2Init) [list source [file join $dir Display2Init.wish]]
-set auto_index(roiInformationWinCreate) [list source [file join $dir Display2InfoROI.wish]]
-set auto_index(roiLineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
-set auto_index(roiSplineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
-set auto_index(roiRectangleInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
-set auto_index(roiAnalysisFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
set auto_index(histgramGraphCreate) [list source [file join $dir Display2Info.wish]]
set auto_index(display2InformationWinCreate) [list source [file join $dir Display2Info.wish]]
set auto_index(fileReopen) [list source [file join $dir Display2Info.wish]]
set auto_index(ctfInformationWinCreate) [list source [file join $dir Display2Info.wish]]
set auto_index(unitCellInformationWinCreate) [list source [file join $dir Display2Info.wish]]
set auto_index(scaleInfoWinCreate) [list source [file join $dir Display2Info.wish]]
+set auto_index(roiInformationWinCreate) [list source [file join $dir Display2InfoROI.wish]]
+set auto_index(roiLineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
+set auto_index(roiSplineInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
+set auto_index(roiRectangleInfoFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
+set auto_index(roiAnalysisFrameCreate) [list source [file join $dir Display2InfoROI.wish]]
+set auto_index(display2SetVar) [list source [file join $dir Display2Init.wish]]
+set auto_index(display2InitVar) [list source [file join $dir Display2Init.wish]]
+set auto_index(display2InitVarSet) [list source [file join $dir Display2Init.wish]]
+set auto_index(diplay2CanvasInit) [list source [file join $dir Display2Init.wish]]
+set auto_index(display2Init) [list source [file join $dir Display2Init.wish]]
+set auto_index(display2MenuSet) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuFileCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuSeqFileCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuWindowCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuInfoCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuHelpCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(menuExitCreate) [list source [file join $dir Display2Menu.wish]]
+set auto_index(display2MenuSet2) [list source [file join $dir Display2Menu2.wish]]
+set auto_index(roiRelatedObjectRecreate) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuRoiCreate) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuRoiCancelCommand) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuRoiSingleMultiTransform) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuMultiRoiOKCommand) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
+set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
+set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
+set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
+set auto_index(layerLineChange) [list source [file join $dir LayerLineUtil.wish]]
+set auto_index(projectionRecreate) [list source [file join $dir ProjectionUtil.wish]]
+set auto_index(projectionCreate) [list source [file join $dir ProjectionUtil.wish]]
+set auto_index(projectionClear) [list source [file join $dir ProjectionUtil.wish]]
+set auto_index(projectionChange) [list source [file join $dir ProjectionUtil.wish]]
set auto_index(roiAreaCreateStart) [list source [file join $dir RoiAreaCreate.wish]]
set auto_index(roiAreaCreateMotion) [list source [file join $dir RoiAreaCreate.wish]]
set auto_index(roiAreaCreateEnd) [list source [file join $dir RoiAreaCreate.wish]]
set auto_index(splineCreate) [list source [file join $dir RoiAreaCreate.wish]]
set auto_index(knobShow) [list source [file join $dir RoiAreaCreate.wish]]
set auto_index(knobHide) [list source [file join $dir RoiAreaCreate.wish]]
-set auto_index(display2BindingSet) [list source [file join $dir Display2Binding.wish]]
-set auto_index(display2MenuSet) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuFileCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuSeqFileCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuWindowCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuInfoCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuHelpCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(menuExitCreate) [list source [file join $dir Display2Menu.wish]]
-set auto_index(roiRelatedObjectRecreate) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuRoiCreate) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuRoiCancelCommand) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuRoiSingleMultiTransform) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuMultiRoiOKCommand) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
-set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(roiMultiAreaInfoSave) [list source [file join $dir RoiAreaFile.wish]]
+set auto_index(roiMultiAreaInfoLoad) [list source [file join $dir RoiAreaFile.wish]]
+set auto_index(roiAreaFileSave) [list source [file join $dir RoiAreaFile.wish]]
+set auto_index(roiAreaMoveStart) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(roiAreaMoveMotion) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(roiAreaMoveEnd) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(rectangleMove) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(lineMove) [list source [file join $dir RoiAreaMove.wish]]
+set auto_index(splineMove) [list source [file join $dir RoiAreaMove.wish]]
set auto_index(roiAreaResizeStart) [list source [file join $dir RoiAreaResize.wish]]
set auto_index(roiAreaResizeMotion) [list source [file join $dir RoiAreaResize.wish]]
set auto_index(roiAreaResizeEnd) [list source [file join $dir RoiAreaResize.wish]]
set auto_index(lineRotateCalc) [list source [file join $dir RoiAreaRotate.wish]]
set auto_index(splineRotate) [list source [file join $dir RoiAreaRotate.wish]]
set auto_index(splineRotateCalc) [list source [file join $dir RoiAreaRotate.wish]]
-set auto_index(roiMultiAreaInfoSave) [list source [file join $dir RoiAreaFile.wish]]
-set auto_index(roiMultiAreaInfoLoad) [list source [file join $dir RoiAreaFile.wish]]
-set auto_index(roiAreaFileSave) [list source [file join $dir RoiAreaFile.wish]]
-set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
-set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
-set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
-set auto_index(layerLineChange) [list source [file join $dir LayerLineUtil.wish]]
-set auto_index(fileOpenWinCreate) [list source [file join $dir Display2File.wish]]
-set auto_index(fileNewWinCreate) [list source [file join $dir Display2File.wish]]
-set auto_index(seqFileOpenWinCreate) [list source [file join $dir Display2File.wish]]
-set auto_index(seqFileNewWinCreate) [list source [file join $dir Display2File.wish]]
-set auto_index(display2DesktopSet) [list source [file join $dir Display2Desktop.wish]]
+set auto_index(roiAreaSelectStart) [list source [file join $dir RoiAreaSelect.wish]]
+set auto_index(roiAreaSelectMotion) [list source [file join $dir RoiAreaSelect.wish]]
+set auto_index(roiAreaSelectEnd) [list source [file join $dir RoiAreaSelect.wish]]
+set auto_index(roiAreaSelectOK) [list source [file join $dir RoiAreaSelect.wish]]
+set auto_index(roiAreaFFT) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(splineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(rectangleNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(lineNearPoint) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(pointDistance) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(pointDistance2) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(vectorAngle) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(coordGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(coordGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(dataGetInMainImageToReal) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(dataGetInMainImageToCanvas) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(pointSet) [list source [file join $dir RoiAreaUtil.wish]]
+set auto_index(roiAreaZoomIn) [list source [file join $dir RoiAreaZoom.wish]]
+set auto_index(roiAreaZoomOut) [list source [file join $dir RoiAreaZoom.wish]]
+set auto_index(roiAreaZoom) [list source [file join $dir RoiAreaZoom.wish]]
+set auto_index(ScaleRecreate) [list source [file join $dir ScaleUtil.wish]]
+set auto_index(ScaleCreate) [list source [file join $dir ScaleUtil.wish]]
+set auto_index(ScaleClear) [list source [file join $dir ScaleUtil.wish]]
+set auto_index(ScaleChange) [list source [file join $dir ScaleUtil.wish]]
set auto_index(sectionInit) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionRecreateAll) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionRecreate) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionClearAll) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionClear) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionChange) [list source [file join $dir SectionUtil.wish]]
-set auto_index(ScaleRecreate) [list source [file join $dir ScaleUtil.wish]]
-set auto_index(ScaleCreate) [list source [file join $dir ScaleUtil.wish]]
-set auto_index(ScaleClear) [list source [file join $dir ScaleUtil.wish]]
-set auto_index(ScaleChange) [list source [file join $dir ScaleUtil.wish]]
set auto_index(unitCellRecreate) [list source [file join $dir UnitCell.wish]]
-set auto_index(display2MenuSet2) [list source [file join $dir Display2Menu2.wish]]
-set auto_index(roiAreaMoveStart) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(roiAreaMoveMotion) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(roiAreaMoveEnd) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(rectangleMove) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(lineMove) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(splineMove) [list source [file join $dir RoiAreaMove.wish]]
-set auto_index(display2ETCSet) [list source [file join $dir Display2ETCSet.wish]]
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/contourCreate.c:
+
+../src/lcontour2ps.c:
+
+../src/lmrc2contour.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/tkImgFmtMRC.c:
+
+../src/tkImgFmtlargeIP.c:
+
+../src/tkctfInfo.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/avsFileInit.c:
+
+../src/avsFileSet.c:
+
+../src/avsFileWrite.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/density_sphere.c:
+
+../src/drawWireFrame.c:
+
+../src/lmolvieCamera.c:
+
+../src/lmolvieDisplayLib.c:
+
+../src/lmolvieDisplayListMake.c:
+
+../src/lmolvieDisplayNormal.c:
+
+../src/lmolvieDisplayParallel.c:
+
+../src/lmolvieDockDisplay.c:
+
+../src/lmolvieDockKeyboard.c:
+
+../src/lmolvieFlightDisplay.c:
+
+../src/lmolvieFlightIdle.c:
+
+../src/lmolvieFlightKeyboard.c:
+
+../src/lmolvieIdleNormal.c:
+
+../src/lmolvieInitNormal.c:
+
+../src/lmolvieInitParallel.c:
+
+../src/lmolvieKeyboard.c:
+
+../src/lmolvieKeyboardDrive.c:
+
+../src/lmolvieKeyboardMulti.c:
+
+../src/lmolvieKeyboardNormal.c:
+
+../src/lmolvieKeyboardParallel.c:
+
+../src/lmolvieKeyboardSurface.c:
+
+../src/lmolvieLight.c:
+
+../src/lmolvieMRCread.c:
+
+../src/lmolvieMouse.c:
+
+../src/lmolvieMouseDrive.c:
+
+../src/lmolvieMouseMulti.c:
+
+../src/lmolvieMouseNormal.c:
+
+../src/lmolvieMouseParallel.c:
+
+../src/lmolvieMrcViewerDisplay.c:
+
+../src/lmolvieMrcViewerKeyboard.c:
+
+../src/lmolvieMrcViewerMouse.c:
+
+../src/lmolvieOperation.c:
+
+../src/lmolviePDBread.c:
+
+../src/lmolvieProjectionKeyboard.c:
+
+../src/lmolvieProjectionMouse.c:
+
+../src/lmolvieProteinStatus.c:
+
+../src/lmolvieReshapeNormal.c:
+
+../src/lmolvieReshapeParallel.c:
+
+../src/lmolvieTest.c:
+
+../src/lmolvieTexture.c:
+
+../src/lmolvieViewerDisplay.c:
+
+../src/lmolvieViewerIdle.c:
+
+../src/lmolvieViewerKeyboard.c:
+
+../src/lmolvieViewerMouse.c:
+
+../src/lmolvieViewerSpecial.c:
+
+../src/lmolvieVoice.c:
+
+../src/loadPDB.c:
+
+../src/loadPPM.c:
+
+../src/marching_cubes.c:
+
+../src/multiPDB.c:
+
+../src/openGLKey.c:
+
+../src/savePPM.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/decoder.c:
+
+../src/gifFileInit.c:
+
+../src/gifFileWrite.c:
+
+../src/gifUtil.c:
+
+../src/gifcompr.c:
+
+../src/gifencod.c:
+
+../src/lmrc2gif.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/lmrc2png.c:
+
+../src/pngFileInit.c:
+
+../src/pngFileWrite.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/psFileCircle.c:
+
+../src/psFileContour.c:
+
+../src/psFileContour3D.c:
+
+../src/psFileEnd.c:
+
+../src/psFileImage.c:
+
+../src/psFileInit.c:
+
+../src/psFileLine.c:
+
+../src/psFilePage.c:
+
+../src/psFileRead.c:
+
+../src/psFileString.c:
+
+../src/psFileUtil.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/lmrc2bild.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/bmpFileInfo.c:
+
+../src/bmpFileRead.c:
+
+../src/lbmp2mrc.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/ctfDeterminationFromPhaseComparison.c:
+
+../src/ctfFunction.c:
+
+../src/ctfInfoPVM.c:
+
+../src/ctfInfoRead.c:
+
+../src/ctfInfoWrite.c:
+
+../src/ctfInfoWrite2.c:
+
+../src/ctfWeight.c:
+
+../src/ctfZeroPoint.c:
+
+../src/ctfforbayes.c:
+
+../src/ctfforbayescheck.c:
+
+../src/defocuslikelihood.c:
+
+../src/lastigmatismDetection.c:
+
+../src/lctfDetermination.c:
+
+../src/lctfDetermine.c:
+
+../src/lmolecularEnvelope.c:
+
+../src/lmrcFSInfoScatteringAngularDistributionAverageSection.c:
+
+../src/powerspectraTangentLine.c:
+
+../src/thonRing.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/dmFileInfo.c:
+
+../src/dmFileInit.c:
+
+../src/dmFileRead.c:
+
+../src/dmFileUtil.c:
+
+../src/ldm2mrc.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/dsn6Init.c:
+
+../src/dsn6Write.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/emDataRead.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/lmrc2viff.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/largeIPRead.c:
+
+../src/tkImgFmtlargeIP.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/llDataCheck.c:
+
+../src/llDataETC.c:
+
+../src/llDataError.c:
+
+../src/llDataGet.c:
+
+../src/llDataInfo.c:
+
+../src/llDataInit.c:
+
+../src/llDataIntensityInformationGet.c:
+
+../src/llDataPVM.c:
+
+../src/llDataRead.c:
+
+../src/llDataSet.c:
+
+../src/llDataUtil.c:
+
+../src/llDataWrite.c:
+
+../src/lll2ltlg.c:
+
+../src/lllDataAdd.c:
+
+../src/lllDataAverage.c:
+
+../src/lllDataAvgTo.c:
+
+../src/lllDataAxisSearch.c:
+
+../src/lllDataAxisSearch2.c:
+
+../src/lllDataAxisSearchAndAverage.c:
+
+../src/lllDataCTFCompensate.c:
+
+../src/lllDataCTFObservation.c:
+
+../src/lllDataCompare.c:
+
+../src/lllDataContributionCalcDifferentN.c:
+
+../src/lllDataDifferenceCalc.c:
+
+../src/lllDataEquatorAdd.c:
+
+../src/lllDataExtract.c:
+
+../src/lllDataFit.c:
+
+../src/lllDataFit2.c:
+
+../src/lllDataFitAndAverage.c:
+
+../src/lllDataFitMergedLL.c:
+
+../src/lllDataFitOut.c:
+
+../src/lllDataFitParamInverse.c:
+
+../src/lllDataFitUtil.c:
+
+../src/lllDataFitUtilPVM.c:
+
+../src/lllDataInterpolate.c:
+
+../src/lllDataLowPassFiltering.c:
+
+../src/lllDataMergeDifferentN.c:
+
+../src/lllDataMultiCTFCompensation.c:
+
+../src/lllDataPhaseShift.c:
+
+../src/lllDataPrint.c:
+
+../src/lllDataRescaling.c:
+
+../src/lllDataSingleCTFCompensation.c:
+
+../src/lllDataWeightSet.c:
+
+../src/lllDatarMaxLimit.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/lltlg2mrc.c:
+
+../src/ltlgDataAllocate.c:
+
+../src/ltlgDataGet.c:
+
+../src/ltlgDataPrint.c:
+
+../src/ltlgDataReadFile.c:
+
+../src/ltlgDataWeightModify.c:
+
+../src/ltlgDataWriteFile.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/mapFileRead.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/fftn.c:
+
+../src/lmrcFETnormalizeBySD.c:
+
+../src/lmrcFFTCentralSection.c:
+
+../src/lmrcFFTCentralSectionCompare.c:
+
+../src/lmrcFFTCentralSectionCompareInfoWrite.c:
+
+../src/lmrcFFTCentralSectionsGet.c:
+
+../src/lmrcFFTExpression.c:
+
+../src/lmrcFFTFGconj.c:
+
+../src/lmrcFFTFxG.c:
+
+../src/lmrcFFTInfo.c:
+
+../src/lmrcImage3DPad.c:
+
+../src/lmrcImage3DWindowing.c:
+
+../src/lmrcImageAddValue.c:
+
+../src/lmrcImageAsProbability.c:
+
+../src/lmrcImageAverage.c:
+
+../src/lmrcImageBandPassFilter.c:
+
+../src/lmrcImageBilateralFilter.c:
+
+../src/lmrcImageBinarization.c:
+
+../src/lmrcImageBottomHatTransform.c:
+
+../src/lmrcImageBoundaryInfo.c:
+
+../src/lmrcImageCTFCompensation.c:
+
+../src/lmrcImageCTFDetermination.c:
+
+../src/lmrcImageCTFObservation.c:
+
+../src/lmrcImageCTFSN.c:
+
+../src/lmrcImageCVE.c:
+
+../src/lmrcImageCalcArea.c:
+
+../src/lmrcImageCenterGet.c:
+
+../src/lmrcImageCentre.c:
+
+../src/lmrcImageClosing.c:
+
+../src/lmrcImageClusterAnalysis.c:
+
+../src/lmrcImageCommonLine.c:
+
+../src/lmrcImageConnection.c:
+
+../src/lmrcImageConnectivityNumberCalc.c:
+
+../src/lmrcImageContourSurface.c:
+
+../src/lmrcImageContraction.c:
+
+../src/lmrcImageCorrelation.c:
+ $lmrcImageEuclidDistanceCalc: Calculate Euclid distance between two images $
+ $arg: in1: input mrcImage1 $
+ $arg: in2: input mrcImage2 $
+ $arg: mode: input int $
+ $mode: 0 Sum of SQR $
+ $mode: 1 Distance $
+ $return: EuclidDistance $
+
+../src/lmrcImageCorrelationPVM.c:
+
+../src/lmrcImageCorrelationWithCTFCompensation.c:
+
+../src/lmrcImageCorrelationinSpace.c:
+
+../src/lmrcImageCrystalCreate.c:
+
+../src/lmrcImageDataMaxAndMinGetByImage.c:
+
+../src/lmrcImageDataStraightCopy.c:
+
+../src/lmrcImageDeconvolution.c:
+
+../src/lmrcImageDensity.c:
+
+../src/lmrcImageDensityInverse.c:
+
+../src/lmrcImageDensityNormalizationByImage.c:
+
+../src/lmrcImageDifferential.c:
+
+../src/lmrcImageDilation.c:
+
+../src/lmrcImageDistanceConversion.c:
+
+../src/lmrcImageEdge.c:
+
+../src/lmrcImageEdgeAverage.c:
+
+../src/lmrcImageEdgeEnhancement.c:
+
+../src/lmrcImageErosion.c:
+
+../src/lmrcImageFFT.c:
+
+../src/lmrcImageFOMCalc.c:
+
+../src/lmrcImageFeatureCalc.c:
+
+../src/lmrcImageFeatureExtraction.c:
+
+../src/lmrcImageFeatureExtractionCoOccurrence.c:
+
+../src/lmrcImageFeatureExtractionRunLength.c:
+
+../src/lmrcImageFilterCreate.c:
+
+../src/lmrcImageFirstNoiseReductionByRelaxation.c:
+
+../src/lmrcImageFloating.c:
+
+../src/lmrcImageFourierNeighborCorrelation.c:
+
+../src/lmrcImageFourierPowerSpectrum.c:
+
+../src/lmrcImageFourierShellCorrelation.c:
+
+../src/lmrcImageHighPassFilter.c:
+
+../src/lmrcImageHighlighting.c:
+
+../src/lmrcImageHoleFilling.c:
+
+../src/lmrcImageHoughTransform.c:
+
+../src/lmrcImageLabeling.c:
+
+../src/lmrcImageLocalMaximumValuesFind.c:
+
+../src/lmrcImageLogicalOperation.c:
+
+../src/lmrcImageLowPassFilter.c:
+
+../src/lmrcImageMasking.c:
+
+../src/lmrcImageMaxDataGet.c:
+
+../src/lmrcImageMirroring.c:
+ $lmrcImageMirroring: (mrcImage* out, mrcImage* in, lmrcImageMirroring mode) $
+
+../src/lmrcImageModeChange.c:
+
+../src/lmrcImageModelCreate.c:
+
+../src/lmrcImageMontageCreate.c:
+
+../src/lmrcImageMorphology.c:
+
+../src/lmrcImageMove.c:
+
+../src/lmrcImageMultiCTFCompensation.c:
+
+../src/lmrcImageMultiplying.c:
+
+../src/lmrcImageNegativeLaplacian.c:
+
+../src/lmrcImageNoiseCreate.c:
+
+../src/lmrcImageNormalizing.c:
+
+../src/lmrcImageOneLineSimilarityCalc.c:
+
+../src/lmrcImageOpening.c:
+
+../src/lmrcImagePad.c:
+
+../src/lmrcImagePartImageSegmentation.c:
+
+../src/lmrcImagePattersonFunctionCalc.c:
+
+../src/lmrcImagePixelSummationOfProbabilityGetByImage.c:
+
+../src/lmrcImagePosterization.c:
+
+../src/lmrcImagePrewitt.c:
+
+../src/lmrcImageProjection.c:
+
+../src/lmrcImageProportionalDensityLevelSetByImage.c:
+
+../src/lmrcImageROI2D.c:
+
+../src/lmrcImageROI3D.c:
+
+../src/lmrcImageROInotChangeHeaderLength.c:
+
+../src/lmrcImageRadialDistribution.c:
+
+../src/lmrcImageRhoFiltering.c:
+
+../src/lmrcImageRoberts.c:
+
+../src/lmrcImageRotation.c:
+
+../src/lmrcImageSSDA.c:
+
+../src/lmrcImageSamplingUnitChange.c:
+
+../src/lmrcImageSecondNoiseReductionByRelaxation.c:
+
+../src/lmrcImageSecondNoiseReductionByRelaxationDijDimensionSet.c:
+
+../src/lmrcImageSecondNoiseReductionByRelaxationDijValueCalculate.c:
+
+../src/lmrcImageSecondNoiseReductionByRelaxationDijValueSet.c:
+
+../src/lmrcImageSecondNoiseReductionByRelaxationQValueSet.c:
+
+../src/lmrcImageSecondNoiseReductionByRelaxationRValueSet.c:
+
+../src/lmrcImageShapePCA.c:
+
+../src/lmrcImageShift.c:
+
+../src/lmrcImageShrink.c:
+
+../src/lmrcImageSigmaCalculate.c:
+
+../src/lmrcImageSinogram.c:
+
+../src/lmrcImageSinogramCorrelation.c:
+
+../src/lmrcImageSinogramFFT.c:
+
+../src/lmrcImageSmoothing.c:
+
+../src/lmrcImageSobel.c:
+
+../src/lmrcImageSoftEdge.c:
+
+../src/lmrcImageSolventFlattening.c:
+
+../src/lmrcImageSpatialFrequencyFilter.c:
+
+../src/lmrcImageSphere.c:
+
+../src/lmrcImageSplit.c:
+
+../src/lmrcImageStack.c:
+
+../src/lmrcImageStudentCalculate.c:
+
+../src/lmrcImageSubtractionCalc.c:
+
+../src/lmrcImageSummationCalculate.c:
+
+../src/lmrcImageSurfaceAreaCalc.c:
+
+../src/lmrcImageSymmetryFind.c:
+
+../src/lmrcImageTfunction.c:
+
+../src/lmrcImageToneReversal.c:
+
+../src/lmrcImageTopHatTransform.c:
+
+../src/lmrcImageTrans.c:
+
+../src/lmrcImageTransformDescartesIntoPolar.c:
+
+../src/lmrcImageTranspose.c:
+
+../src/lmrcImageTriming.c:
+
+../src/lmrcImageUnsharpening.c:
+
+../src/lmrcImageVolumeCalc.c:
+
+../src/lmrcImageWindowing.c:
+
+../src/lmrcImagesFTest.c:
+
+../src/lmrcImagesStatDataGet.c:
+
+../src/lmrcImagesTTest.c:
+
+../src/lmrcImagesVarianceAnalysis.c:
+
+../src/lmrcImagesVarianceMap.c:
+
+../src/lmrcMultiFFTCentralSectionsCompare.c:
+
+../src/lmrcMultiFFTCentralSectionsSigma.c:
+
+../src/lmrcSinogramFET.c:
+
+../src/lmrcSinogramFETPCA.c:
+
+../src/lmrcSinogramFETcalcWeight.c:
+
+../src/lmrcSinogramFETcorrelationMap.c:
+
+../src/lmrcSinogramFETnormalizedMap.c:
+
+../src/lmrcSinogramFETreferredCorrelation.c:
+
+../src/lmrcSinogramFETsmoothParameterMatching.c:
+
+../src/mrcImageCheckFFT.c:
+
+../src/mrcImageCheckSameSize.c:
+
+../src/mrcImageCopy.c:
+
+../src/mrcImageDataSet.c:
+
+../src/mrcImageError.c:
+
+../src/mrcImageGet.c:
+
+../src/mrcImageGetPixels.c:
+
+../src/mrcImageInfo.c:
+
+../src/mrcImageInit.c:
+
+../src/mrcImageOperation.c:
+
+../src/mrcImagePVM.c:
+
+../src/mrcImagePrint.c:
+
+../src/mrcImageRead.c:
+
+../src/mrcImageSectionGet.c:
+
+../src/mrcImageSectionSet.c:
+
+../src/mrcImageSet.c:
+
+../src/mrcImageTailer.c:
+
+../src/mrcImageToIntImage.c:
+
+../src/mrcImageUtil.c:
+
+../src/mrcImageUtilityforVariance.c:
+
+../src/mrcImageWrite.c:
+
+../src/mrcImageWrite2.c:
+
+../src/mrcImagefuncmin.c:
+
+../src/mrcRefUtil.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/lmrcImageMeanFreePath.c:
+
+../src/lmrcImageShapeModePrint.c:
+
+../src/lmrcImageShapeSearch.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/lpdb2mrc2d.c:
+
+../src/lpdb2mrc3d.c:
+
+../src/lpdbCoord.c:
+
+../src/lpdbCoordInfo.c:
+
+../src/lpdbSelectedAtom.c:
+
+../src/lpdbSurface.c:
+
+../src/pdbFileRead.c:
+
+../src/pdbFileWrite.c:
+
+../src/pdbGet.c:
+
+../src/pdbInfoGet.c:
+
+../src/pdbRotation.c:
+
+../src/pdbSecondaryStructure.c:
+
+../src/pdbSet.c:
+
+../src/pdbTrans.c:
+
+../src/pdbUtil.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/rigakuImageRead.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/tgaFileInit.c:
+
+../src/tgaFilePrint.c:
+
+../src/tgaFileRead.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/lAllCommonLineCalculation.c:
+
+../src/lAngularWeightCalculation.c:
+
+../src/lCommonLineCalculation.c:
+
+../src/lCommonLineDataSetInPlaneRotation.c:
+
+../src/lCommonLinesDataSet.c:
+
+../src/lDescartesIntoPolar.c:
+
+../src/lEvaluateCorrelationMapwithCommonLine.c:
+
+../src/lFETOrientationSearchByAnnealing.c:
+
+../src/lFETOrientationSearchByFeatureAlignment.c:
+
+../src/lFETOrientationSearchByFeatureAlignmentInitSet.c:
+
+../src/lFETOrientationSearchByFeatureAlignmentSphere.c:
+
+../src/lFETmapOrientationSearchBySimultaneousFitting.c:
+
+../src/lFETsmallMapSetCreate_forSimultaneousMinimization.c:
+
+../src/lInitialDataFileRead.c:
+
+../src/lJcalulation.c:
+
+../src/lLcalculation.c:
+
+../src/lPlaneRotationAngleSet.c:
+
+../src/lllDataSeparationInfoPrint.c:
+
+../src/lllDataSeparationInfoRead.c:
+
+../src/lllDataSeparationInfoSet.c:
+
+../src/lllDatarMaxLimitForSeparation.c:
+
+../src/lllExtract.c:
+
+../src/lllExtractCtfinfFileCreate.c:
+
+../src/lllExtractWithSeparation.c:
+
+../src/lllExtractdYEstimate.c:
+
+../src/lmrc2Dto3D.c:
+
+../src/lmrc2Dto3DSIRT.c:
+
+../src/lmrc3Dto2D.c:
+
+../src/lmrc3Dto2DFFT.c:
+
+../src/lmrcImageFileListAndEulerAngleDataRead.c:
+
+../src/lmrcImageOneLineGet.c:
+
+../src/lmrcImageSinogramCorrelationAdditionalWeight.c:
+
+../src/lmrcImageToFFT.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/clusterLogAnalysis.c:
+
+../src/clusterLogInit.c:
+
+../src/clusterLogRead.c:
+
+../src/clusterLogUtil.c:
+
+../src/clusterLogWrite.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/crystalHelix.c:
+ $Revision: 1.1 $
+ $Date: 2002/02/14 10:18:46 $
+ $Author: tacyas $
+ $State: Exp $
+ $Log: crystalHelix.c,v $
+
+../src/crystalInfoFile.c:
+
+../src/crystalInit.c:
+
+../src/crystalUtil.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/map2DCoordGet.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/matrix3DEulerAngleGet.c:
+
+../src/matrix3DEulerAngleSet.c:
+
+../src/matrix3DEulerAngles.c:
+
+../src/matrix3DFile.c:
+
+../src/matrix3DInit.c:
+
+../src/matrix3DMultiply.c:
+
+../src/matrix3DMultiplyMatrix.c:
+
+../src/matrix3DMultiplyVector.c:
+
+../src/matrix3DRotation.c:
+
+../src/matrix3DTranslation.c:
+
+../src/matrix3DUtil.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/memoryAllocate.c:
+
+../src/memoryByteSwap.c:
+
+../src/memoryClear.c:
+
+../src/memoryCopy.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/pvmStart.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/randomNormal.c:
+
+../src/randomUniform.c:
+
+../src/srandom.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/socketClient.c:
+
+../src/socketServer.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/pow2nn.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/Vector.c:
+
+../src/VectorRead.c:
+
+../src/VectorScalarProduct.c:
+
+../src/lVectorSpline2D.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/eosBayesCondition.c:
+
+../src/eosBayesDistributionInit.c:
+
+../src/eosBayesDistributionInitialProbabilitySet.c:
+
+../src/eosBayesEstimation.c:
+
+../src/eosBayesFree.c:
+
+../src/eosBayesParameterOfMaxPosterior.c:
+
+../src/eosBayesRead.c:
+
+../src/eosBayesWrite.c:
+
+../src/eosBayesflag.c:
+
+../src/leosBayesInit.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/eosFunc.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/eosMathStatistics.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/eosPThread.c:
+
+../src/eosPThreadCreate.c:
+
+../src/eosPThreadInit.c:
+
+../src/eosPThreadJoin.c:
+
+../src/eosPThreadMutex.c:
</PRE>
<HR>
<A NAME="include">
<H2>Information from source codes</H2>
</A>
<PRE>
+../src/eosPointCopy.c:
+
+../src/eosPointProject.c:
+
+../src/eosPointRead.c:
+
+../src/eosPointRotate.c:
+
+../src/eosPointUtil.c:
+
+../src/eosPointWrite.c:
</PRE>
<HR>
<A NAME="include">
random \
rec3d \
simulation \
-test \
tiffFileUtil \
timeSeries \
transform \
ctfInfo \
database \
eosBayes \
+eosMath \
eosPoint \
filter \
hf2000 \
random \
rec3d \
simulation \
+test \
tiffFileUtil \
timeSeries \
transform \
WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-WORLDNAME=Tools
-/bin/bash: dcdCompareCA: No such file or directory
+/bin/bash: dcdCompareCA: そのようなファイルやディレクトリはありません
-/bin/bash: dcdDistanceAtomBetweenAtom: No such file or directory
+/bin/bash: dcdDistanceAtomBetweenAtom: そのようなファイルやディレクトリはありません
-/bin/bash: Display3: No such file or directory
+/bin/bash: Display3: そのようなファイルやディレクトリはありません
-/bin/bash: Eos: No such file or directory
+/bin/bash: Eos: そのようなファイルやディレクトリはありません
-/bin/bash: StereoDisplay: No such file or directory
+/bin/bash: StereoDisplay: そのようなファイルやディレクトリはありません
-/bin/bash: Visualmake: No such file or directory
+/bin/bash: Visualmake: そのようなファイルやディレクトリはありません
-/bin/bash: imagesClustering: No such file or directory
+/bin/bash: imagesClustering: そのようなファイルやディレクトリはありません
-/bin/bash: obj3Don2DImageView: No such file or directory
+/bin/bash: obj3Don2DImageView: そのようなファイルやディレクトリはありません
-/bin/bash: smolet: No such file or directory
+/bin/bash: smolet: そのようなファイルやディレクトリはありません
-<<<<<<< HEAD
-<HTML>
-<HEAD>
-<TITLE>crystalGetLatticeVolume</TITLE>
-</HEAD>
-<BODY>
-<H1>crystalGetLatticeVolume</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: crystalGetLatticeVolume
-Options:
- [-i[nput] In (stdin ).as(inFile ) ] :Optional :Input:
- [-a[Axis] ax (2 ).as(Real )
- ay (3 ).as(Real )
- az (0 ).as(Real ) ] :Optional :Input:
- [-b[Axis] bx (2 ).as(Real )
- by (3 ).as(Real )
- bz (0 ).as(Real ) ] :Optional :Input:
- [-c[Axis] cx (2 ).as(Real )
- cy (3 ).as(Real )
- cz (1 ).as(Real ) ] :Optional :Input:
- [-o[utput] Out (stdout ).as(outFile ) ] :Optional :Output:
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Additional Usage -----
-> crystaInfo
-aAxis %15.6g %15.6g %15.6g
-bAxis %15.6g %15.6g %15.6g
-cAxis %15.6g %15.6g %15.6g
-CellLength %15.6g %15.6g %15.6g
-Origin %15.6g %15.6g %15.6g
-N %15d %15d %15d
-StartN %15d %15d %15d
-SpaceGroup %15d
-HelixInfo %10d %10d %10d
-### Attention ###
-Parameter Order is important: Dependent between CellLength and a|b|cAxis.
- Because each of aAxis, bAxis, cAxis must be a unit vector.
-HelixInfo t u n
-</PRE>
-</BODY>
-</HTML>
-=======
/bin/bash: crystalGetLatticeVolume: そのようなファイルやディレクトリはありません
->>>>>>> 05144f7ae9b3e43a94f011609484b025af01d7ae
-<<<<<<< HEAD
-<HTML>
-<HEAD>
-<TITLE>crystalGetReciprocalLattice</TITLE>
-</HEAD>
-<BODY>
-<H1>crystalGetReciprocalLattice</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: crystalGetReciprocalLattice
-Options:
- [-i[nput] In (stdin ).as(inFile::ASCII ) ] :Optional :Input
- [-a[Axis] ax (1 ).as(Real )
- ay (0 ).as(Real )
- az (0 ).as(Real ) ] :Optional :Asix[A]
- [-b[Axis] bx (0 ).as(Real )
- by (1 ).as(Real )
- bz (0 ).as(Real ) ] :Optional :Asix[A]
- [-c[Axis] cx (0 ).as(Real )
- cy (0 ).as(Real )
- cz (1 ).as(Real ) ] :Optional :Asix[A]
- [-o[utput] Out (stdout ).as(outFile::ASCII ) ] :Optional :Output
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Additional Usage -----
-</PRE>
-</BODY>
-</HTML>
-=======
/bin/bash: crystalGetReciprocalLattice: そのようなファイルやディレクトリはありません
->>>>>>> 05144f7ae9b3e43a94f011609484b025af01d7ae
-<HTML>
-<HEAD>
-<TITLE>ctfDeterminationByBayes</TITLE>
-</HEAD>
-<BODY>
-<H1>ctfDeterminationByBayes</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: ctfDeterminationByBayes
-Options:
- [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
- [-i[nput]2 In2 (NULL ).as(inFile ) ] :Essential :InputDataFile
- [-i[nput]3 In3 (NULL ).as(inFile ) ] :Essential :InputDataFile
- [-i[nput]4 In4 (NULL ).as(inFileListNoOpen ) ] :Essential :InputDataFile
- [-n[um] numDistribution (3 ).as(Integer )
- numLikelihood (3 ).as(Integer ) ] :Essential :Integer
- [-rmax rmax (250 ).as(Real ) ] :Optional :rmax[1/A]
- [-rintermediate rintermediate (250 ).as(Real ) ] :Optional :rintermediate[1/A]
- [-rfiestpeak rfirstpeak (0.001 ).as(Real ) ] :Optional :rfirstpeak[1/A]
- [-rmin rmin (0 ).as(Real ) ] :Optional :rmin[1/A]
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
- [-MTFmode MTFmode (0 ).as(Integer ) ] :Optional :MTFmode
- [-Ainmode Ainmode (0 ).as(Integer ) ] :Optional :Ainmode
- [-Intensitymode Intensitymode (0 ).as(Integer ) ] :Optional :Intensitymode
------ Additional Usage -----
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: ctfDeterminationByBayes: そのようなファイルやディレクトリはありません
-/bin/bash: ctfDeterminationFromPhaseComparison: No such file or directory
+/bin/bash: ctfDeterminationFromPhaseComparison: そのようなファイルやディレクトリはありません
-/bin/bash: ctfDeterminationFromThonRing: No such file or directory
+/bin/bash: ctfDeterminationFromThonRing: そのようなファイルやディレクトリはありません
-/bin/bash: ctfFunctionServer: No such file or directory
+/bin/bash: ctfFunctionServer: そのようなファイルやディレクトリはありません
-/bin/bash: ctfMultiFunction: No such file or directory
+/bin/bash: ctfMultiFunction: そのようなファイルやディレクトリはありません
-/bin/bash: ctfZeroPoint: No such file or directory
+/bin/bash: ctfZeroPoint: そのようなファイルやディレクトリはありません
-/bin/bash: defocusDeterminationFromThonRing: No such file or directory
+/bin/bash: defocusDeterminationFromThonRing: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>tiltInfoDetermine</TITLE>
-</HEAD>
-<BODY>
-<H1>tiltInfoDetermine</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: tiltInfoDetermine
-Options:
- [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
- [-defocusIn[put] defocus (NULL ).as(inFile ) ] :Essential :InputDataFile
- [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
- [-M[ag] mag (2.4 ).as(Real ) ] :Optional :Mag
------ Additional Usage -----
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: tiltInfoDetermine: そのようなファイルやディレクトリはありません
-/bin/bash: homology2PG: No such file or directory
+/bin/bash: homology2PG: そのようなファイルやディレクトリはありません
-/bin/bash: pgDataBaseSelectServer: No such file or directory
+/bin/bash: pgDataBaseSelectServer: そのようなファイルやディレクトリはありません
-/bin/bash: pgJournalSelect: No such file or directory
+/bin/bash: pgJournalSelect: そのようなファイルやディレクトリはありません
-/bin/bash: pgJournalSelectCORBAClient: No such file or directory
+/bin/bash: pgJournalSelectCORBAClient: そのようなファイルやディレクトリはありません
-/bin/bash: pgJournalSelectCORBAServer: No such file or directory
+/bin/bash: pgJournalSelectCORBAServer: そのようなファイルやディレクトリはありません
-/bin/bash: pgMemoSelectCORBAServer: No such file or directory
+/bin/bash: pgMemoSelectCORBAServer: そのようなファイルやディレクトリはありません
-/bin/bash: pgSelect: No such file or directory
+/bin/bash: pgSelect: そのようなファイルやディレクトリはありません
-/bin/bash: eosBayesInit: No such file or directory
+/bin/bash: eosBayesInit: そのようなファイルやディレクトリはありません
-m 0 : Average
-m 1 : WeightedAverage
-m 0 -trim xx: Trimming
+-m 1 -trim xx: Trimming
</PRE>
</BODY>
</HTML>
-/bin/bash: eosPointCurvatureInfo: No such file or directory
+/bin/bash: eosPointCurvatureInfo: そのようなファイルやディレクトリはありません
-/bin/bash: eosPointProjector: No such file or directory
+/bin/bash: eosPointProjector: そのようなファイルやディレクトリはありません
-/bin/bash: eosPointRotation: No such file or directory
+/bin/bash: eosPointRotation: そのようなファイルやディレクトリはありません
mrc2bild \
mrc2fld \
mrc2gif \
+mrc2hdf \
mrc2lattice \
mrc2mrc \
mrc2png \
-/bin/bash: moi2mrc: No such file or directory
+/bin/bash: moi2mrc: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>mrc2gif</TITLE>
-</HEAD>
-<BODY>
-<H1>mrc2gif</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrc2gif
-Options:
- [-i[nput] inFile (NULL ).as(inFile ) ] :Essential :InputDataFile
- [-o[utput] outFile (NULL ).as(outFile ) ] :Essential :OutputDataFile
- [-H[igh] High (0 ).as(Real ) ] :Optional :HighThreshold
- [-L[ow] Low (0 ).as(Real ) ] :Optional :LowThreshold
- [-I[nverse] ] :Optional :Inverse(Black is white)
- [-z[Section] Z (0 ).as(Integer ) ] :Optional :z-section
- [-e[xtention] format (%s.%04d ).as(String ) ] :Optional :SerialSection Format
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode:
- 0 (8bits), 1(16bits)
-
--z
- -1: Serial Files
- z(>0): Section at z
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: mrc2gif: そのようなファイルやディレクトリはありません
--- /dev/null
+../../../../../hostdepend/X86LINUX64/src/Tools/filter/mrc2hdf/src/X86LINUX64
\ No newline at end of file
--- /dev/null
+/bin/bash: mrc2hdf: そのようなファイルやディレクトリはありません
-/bin/bash: mrc2lattice: No such file or directory
+/bin/bash: mrc2lattice: そのようなファイルやディレクトリはありません
-/bin/bash: mrc2pov: No such file or directory
+/bin/bash: mrc2pov: そのようなファイルやディレクトリはありません
-/bin/bash: mrc2viff: No such file or directory
+/bin/bash: mrc2viff: そのようなファイルやディレクトリはありません
-/bin/bash: hf2000Init: No such file or directory
+/bin/bash: hf2000Init: そのようなファイルやディレクトリはありません
-/bin/bash: hf2000LenzCurrent: No such file or directory
+/bin/bash: hf2000LenzCurrent: そのようなファイルやディレクトリはありません
-/bin/bash: hf2000SpecimenPosition: No such file or directory
+/bin/bash: hf2000SpecimenPosition: そのようなファイルやディレクトリはありません
-/bin/bash: khorosFilterGenerate: No such file or directory
+/bin/bash: khorosFilterGenerate: そのようなファイルやディレクトリはありません
-/bin/bash: llDataAxisSearch: No such file or directory
+/bin/bash: llDataAxisSearch: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>llDataCTFCompensate</TITLE>
-</HEAD>
-<BODY>
-<H1>llDataCTFCompensate</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: llDataCTFCompensate
-Options:
- [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
- [-I[nput] In1 (NULL ).as(inFile ) ] :Optional :InputCTFInformation
- [-I2[nput] In2 (NULL ).as(inFile ) ] :Optional :InputCTFInformation2
- [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
- [-t[ruePitch] truePitch (430.0 ).as(Real ) ] :Essential :truePitch[A]
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
------ CTFInformation file 1 -----
-RR0 F0 PHI0 : If R.lt.RR0, F0=0; If RR0.le.R.lt.RR1, Linear Interpolation F0, F1
-RR1 F1 PHI1 : If RR1.le.R <RR2,
-.................................................
-RRn Fn PHIn : If RRn<= R , F*0 PHI = 0
------ Control File -----
-In[inFile:NULL] #InputDataFile
-In1[inFile:NULL] #InputCTFInformation
-Out[outFile:NULL] #OutputDataFile
-truePitch[Real:100.0] #truePitch[A]
-mode[Integer:0] #Mode
------ CTFInformation file 2 -----
-dF[A] Cs[mm] Acc[kV] ratioOfAmpToPhase
------ How to make file 1 or file 2 -----
-llExtractCtfinfFileCreate make these files.
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: llDataCTFCompensate: そのようなファイルやディレクトリはありません
-/bin/bash: llDataFitServer: No such file or directory
+/bin/bash: llDataFitServer: そのようなファイルやディレクトリはありません
-/bin/bash: llDataMultiCTFCompensation: No such file or directory
+/bin/bash: llDataMultiCTFCompensation: そのようなファイルやディレクトリはありません
-<<<<<<< HEAD
-/bin/bash: llDataPrint: No such file or directory
-=======
<HTML>
<HEAD>
<TITLE>llDataPrint</TITLE>
</PRE>
</BODY>
</HTML>
->>>>>>> 05144f7ae9b3e43a94f011609484b025af01d7ae
-/bin/bash: llDataRotation: No such file or directory
+/bin/bash: llDataRotation: そのようなファイルやディレクトリはありません
-/bin/bash: llDataSeparate: No such file or directory
+/bin/bash: llDataSeparate: そのようなファイルやディレクトリはありません
-/bin/bash: matrix3DEulerAngleTransform: No such file or directory
+/bin/bash: matrix3DEulerAngleTransform: そのようなファイルやディレクトリはありません
-/bin/bash: matrix3DFromEulerAngle: No such file or directory
+/bin/bash: matrix3DFromEulerAngle: そのようなファイルやディレクトリはありません
-/bin/bash: matrix3DInverse: No such file or directory
+/bin/bash: matrix3DInverse: そのようなファイルやディレクトリはありません
mrcImageStreamLine \
mrcImageSubtraction \
mrcImageSuperResolution \
+mrcImageSuperResolutionByOpticalFlow \
mrcImageSurfaceAreaCalc \
mrcImageSurfaceCalc \
mrcImageSymmetryAverage \
-/bin/bash: fft2d: No such file or directory
+/bin/bash: fft2d: そのようなファイルやディレクトリはありません
-/bin/bash: mrc2dsn6: No such file or directory
+/bin/bash: mrc2dsn6: そのようなファイルやディレクトリはありません
-/bin/bash: mrc2hdf: No such file or directory
+/bin/bash: mrc2hdf: そのようなファイルやディレクトリはありません
-/bin/bash: mrcFFTCTFCompensation: No such file or directory
+/bin/bash: mrcFFTCTFCompensation: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>mrcFFTCentralSection</TITLE>
-</HEAD>
-<BODY>
-<H1>mrcFFTCentralSection</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrcFFTCentralSection
-Options:
- [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input: mrc(3D)
- [-t[emplate] Template (NULL ).as(inFile::mrcImage ) ] :Optional :Input: mrcFFT(2D)
- [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output: mrcFFT(2D)
- [-o[utput]I[mage] OutImage (NULL ).as(outFile::mrcImage ) ] :Optional :Output: mrcImage(2D)
- [-E[uler]A[ngle] EAMode (YOYS ).as(String )
- Rot1 (0.0 ).as(Real )
- Rot2 (0.0 ).as(Real )
- Rot3 (0.0 ).as(Real ) ] :Optional :EulerAngle
- [-trans[late] TransX (0.0 ).as(Real )
- TransY (0.0 ).as(Real ) ] :Optional :Traslation(2D)
- [-InterpMode InterpMode (0 ).as(Integer ) ] :Optional :Interpolation Mode
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Additional Usage -----
--t[emplate] : If not set, the size of out (Nx, Ny) is set as the size of in (Nx, Ny).</PRE>
-</BODY>
-</HTML>
+/bin/bash: mrcFFTCentralSection: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>mrcFFTCentralSectionCompare</TITLE>
-</HEAD>
-<BODY>
-<H1>mrcFFTCentralSectionCompare</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrcFFTCentralSectionCompare
-Options:
- [-i[nput] In2D (NULL ).as(inFile::mrcImage ) ] :Essential :Input: 2D(FFT)
- [-i[nput]3d In3D (NULL ).as(inFile::mrcImage ) ] :Essential :Input: 3D(FFT)
- [-E[uler]A[ngle] EAMode (YOYS ).as(String )
- Rot1 (0.0 ).as(Real )
- Rot2 (0.0 ).as(Real )
- Rot3 (0.0 ).as(Real ) ] :Optional :Input: EulerAngle
- [-trans[late] TransX (0.0 ).as(Real )
- TransY (0.0 ).as(Real ) ] :Optional :Input: Translation
- [-InterpMode InterpMode (0 ).as(Integer ) ] :Optional :Interpolation Mode
- [-o[utput] Out (stdout ).as(outFile ) ] :Optional :Output:Likelihood
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Additional Usage -----
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: mrcFFTCentralSectionCompare: そのようなファイルやディレクトリはありません
-/bin/bash: mrcFFTIQEstimation: No such file or directory
+/bin/bash: mrcFFTIQEstimation: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImage1dCutAverage: No such file or directory
+/bin/bash: mrcImage1dCutAverage: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImage3DCTFObservation: No such file or directory
+/bin/bash: mrcImage3DCTFObservation: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImage3DPeakGet: No such file or directory
+/bin/bash: mrcImage3DPeakGet: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageAutoFilamentExtract: No such file or directory
+/bin/bash: mrcImageAutoFilamentExtract: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageAutoRotationCorrelationResultPrint: No such file or directory
+/bin/bash: mrcImageAutoRotationCorrelationResultPrint: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageAutoTriming: No such file or directory
+/bin/bash: mrcImageAutoTriming: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageBilateralFilter: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>mrcImageBilateralFilter</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageBilateralFilter</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageBilateralFilter
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
+ [-s[igma]D[ensity] SigmaDensity (2.0 ).as(Real ) ] :Optional :SigmaDensity
+ [-k[ernal]T[type]D[ensity]KernelTypeDensity (0 ).as(Integer ) ] :Optional :KernelTypeForDensity
+ [-s[igma]S[pace] SigmaSpace (1.0 ).as(Real ) ] :Optional :SigmaSpace
+ [-s[igma]S[pace]3 SigmaSpaceX (1.0 ).as(Real )
+ SigmaSpaceY (1.0 ).as(Real )
+ SigmaSpaceZ (1.0 ).as(Real ) ] :Optional :SigmaSpace(3D)
+ [-k[ernel]T[ype]S[pace]KernelTypeSpace (0 ).as(Integer ) ] :Optional :KernelTypeForSpace
+ [-k[ernel]S[ize] KernelSize (5 ).as(Integer ) ] :Optional :KernelSize
+ [-k[ernel]S[ize]3 KernelSizeX (5 ).as(Integer )
+ KernelSizeY (5 ).as(Integer )
+ KernelSizeZ (5 ).as(Real ) ] :Optional :KernelSize(3D)
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+Bilateral Filter
+ by Tomashi and Manduchi
+ C. Tomasi and R. Manduchi, Bilateral Filtering for Gray and Color Images, Proceedings of the 1998 IEEE International Conference on Computer Vision, Bombay, India
+ fi = Sigma_j(W(i,j)*Ij)/ Sigma_j(Wj)
+ ,where W(i,j)=W_x(xi,xj)*W_I(Ii,Ij)
+------- linfo.mode : 0
+ W_x(xi,xj) = exp(-|xi-xj|^2/2 sigmaSpace^2 )
+ W_I(Ii,Ij) = exp(-|Ii-Ij|^2/2 sigmaDensity^2)
+------- linfo.mode : 1
+ W_x(xi,xj) = 1/(1+|xi-xj|^2/sigmaSpace^2 )
+ W_I(Ii,Ij) = 1/(1+|Ii-Ij|^2/sigmaDensity^2)
+</PRE>
+</BODY>
+</HTML>
-/bin/bash: mrcImageCTFCompensation: No such file or directory
+/bin/bash: mrcImageCTFCompensation: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>mrcImageCTFCompensationForTiltImage</TITLE>
-</HEAD>
-<BODY>
-<H1>mrcImageCTFCompensationForTiltImage</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrcImageCTFCompensationForTiltImage
-Options:
- [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
- [-I[nformation] Info (NULL ).as(inFile ) ] :Essential :Infomation
- [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [cut[Back] cut (6 ).as(Integer ) ] :Optional :Cut
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Additional Usage -----
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: mrcImageCTFCompensationForTiltImage: そのようなファイルやディレクトリはありません
-<<<<<<< HEAD
-/bin/bash: mrcImageChainCodeCalc: No such file or directory
-=======
/bin/bash: mrcImageChainCodeCalc: そのようなファイルやディレクトリはありません
->>>>>>> 05144f7ae9b3e43a94f011609484b025af01d7ae
-<HTML>
-<HEAD>
-<TITLE>mrcImageColoring</TITLE>
-</HEAD>
-<BODY>
-<H1>mrcImageColoring</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrcImageColoring
-Options:
- [-r[ed] rIn (NULL ).as(inFile ) ] :Optional :Red:InputDataFile
- [-g[reen] gIn (NULL ).as(inFile ) ] :Optional :Green:InputDataFile
- [-b[lue] bIn (NULL ).as(inFile ) ] :Optional :Blue:InputDataFile
- [-rH[ight] rHigh (1 ).as(Real ) ] :Optional :Red:HighThres
- [-rL[ow] rLow (0 ).as(Real ) ] :Optional :Red:LowThres
- [-gH[ight] gHigh (1 ).as(Real ) ] :Optional :Green:HighThres
- [-gL[ow] gLow (0 ).as(Real ) ] :Optional :Green:LowThres
- [-bH[ibht] bHigh (1 ).as(Real ) ] :Optional :Blue:HibhThres
- [-bL[ow] bLow (0 ).as(Real ) ] :Optional :BLue:LowThres
- [-o[utput] Out (NULL ).as(outFile ) ] :Optional :gif:OutputDataFile
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: mrcImageColoring: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageConvolution: No such file or directory
+/bin/bash: mrcImageConvolution: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageCoreImageCalc: No such file or directory
+/bin/bash: mrcImageCoreImageCalc: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageCorrelationServer: No such file or directory
+/bin/bash: mrcImageCorrelationServer: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageCorrelationWithCTFCompensation: No such file or directory
+/bin/bash: mrcImageCorrelationWithCTFCompensation: そのようなファイルやディレクトリはありません
-<<<<<<< HEAD
-/bin/bash: mrcImageCrystalDeform: No such file or directory
-=======
/bin/bash: mrcImageCrystalDeform: そのようなファイルやディレクトリはありません
->>>>>>> 05144f7ae9b3e43a94f011609484b025af01d7ae
--- /dev/null
+../../../../../hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageCurl/src/X86LINUX64
\ No newline at end of file
-/bin/bash: mrcImageCutAndSetInArray: No such file or directory
+/bin/bash: mrcImageCutAndSetInArray: そのようなファイルやディレクトリはありません
Options:
[-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
[-o[utput] Out (stdout ).as(outFile ) ] :Optional :OutputDataFile
- [-C[ontour] Contour (10 ).as(Real ) ] :Optional :ContourLevel: 10 9.881313e-324ach
+ [-C[ontour] Contour (10 ).as(Real ) ] :Optional :ContourLevel: 10 5.533535e-322ach
[-log Log (NULL ).as(appendFile ) ] :Optional :OutputDataFile
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
--- /dev/null
+../../../../../hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageDivergence/src/X86LINUX64
\ No newline at end of file
-/bin/bash: mrcImageEdgeImageGet: No such file or directory
+/bin/bash: mrcImageEdgeImageGet: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageEnhancementWithFuzzySets: No such file or directory
+/bin/bash: mrcImageEnhancementWithFuzzySets: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageFFTLayerLineExtraction: No such file or directory
+/bin/bash: mrcImageFFTLayerLineExtraction: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageFOMCalc: No such file or directory
+/bin/bash: mrcImageFOMCalc: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageFOMCalc: No such file or directory
+/bin/bash: mrcImageFOMCalc: そのようなファイルやディレクトリはありません
-<<<<<<< HEAD
-<HTML>
-<HEAD>
-<TITLE>mrcImageFeatureCalc</TITLE>
-</HEAD>
-<BODY>
-<H1>mrcImageFeatureCalc</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrcImageFeatureCalc
-Options:
- [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:binary(BandW)
- [-r[erencence] Ref (NULL ).as(inFile::mrcImage ) ] :Optional :Input:reference(density)
- [-o[utput] Out (stdout ).as(outFile::ASCII ) ] :Optional :Output:
- [-o[utput]GC OutGC (NULL ).as(outFile::mrcImage ) ] :Optional :Output:gc
- [-o[utput]L[abel] OutLabel (NULL ).as(outFile::mrcImage ) ] :Optional :Output:Label
- [-o[utput]P[eprimeter]OutPerimeter (NULL ).as(outFile::mrcImage ) ] :Optional :Output:Label
- [-o[utput]S[urfaceArea]OutSurfaceArea (NULL ).as(outFile::mrcImage ) ] :Optional :Output:SurfaceArea
- [-n[eighbor] neighbor (0 ).as(Integer ) ] :Optional :Neighbor: [4(0)|8 or 6(0)|18|26]
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Additional Usage -----
-Mode
-</PRE>
-</BODY>
-</HTML>
-=======
/bin/bash: mrcImageFeatureCalc: そのようなファイルやディレクトリはありません
->>>>>>> 05144f7ae9b3e43a94f011609484b025af01d7ae
-/bin/bash: mrcImageFilamentSearch: No such file or directory
+/bin/bash: mrcImageFilamentSearch: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageFractalFrourierShellCorrelation: No such file or directory
+/bin/bash: mrcImageFractalFrourierShellCorrelation: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageGaussSphere: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>mrcImageGaussSphere</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageGaussSphere</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageGaussSphere
+Options:
+ [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
+ [-E[uler]A[ngle] EA (YOYS ).as(String )
+ Rot1 (0.0 ).as(Real )
+ Rot2 (0.0 ).as(Real )
+ Rot3 (0.0 ).as(Real ) ] :Optional :Input: Gauss Sphere: Rotation
+ [-centre ShiftX (0.0 ).as(Real )
+ ShiftY (0.0 ).as(Real )
+ ShiftZ (0.0 ).as(Real ) ] :Optional :Input: Gauss Sphere: Centre
+ [-sigmax sigmax (10 ).as(Real ) ] :Optional :sigmax[A]
+ [-sigmay sigmay (20 ).as(Real ) ] :Optional :sigmay[A]
+ [-sigmaz sigmaz (30 ).as(Real ) ] :Optional :sigmaz[A]
+ [-sigma_range sigma_range (3 ).as(Real ) ] :Optional :x times
+ [-weight weight (10 ).as(Real ) ] :Optional :weight
+ [-size size (5 ).as(Real ) ] :Optional :Pixel Size[A]
+ [-W[idth] Width (0 ).as(Real ) ] :Optional :Width[A]
+ [-H[ight] Height (0 ).as(Real ) ] :Optional :Height[A]
+ [-S[ection] Section (0 ).as(Real ) ] :Optional :Section[A]
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (2 ).as(Integer ) ] :Optional :Mode
+Gauss Sphere is cutted at sigma_range*sigma
+Gauss Sphere = weight * exp ( - ((x^2 / sigmax^2)+(y^2 / sigmay^2)+(z^2 / sigmaz^2))
+mrcImageFileSize is (sigma_range*sigmax*2) x (sigma_range*sigmay*2) x (sigma_range*sigmaz*2)
+-----------------------------------------------------------------------------------
+-EA: for rotation
+-----------------------------------------------------------------------------------
+mode 0 char
+mode 2 float
+</PRE>
+</BODY>
+</HTML>
--- /dev/null
+../../../../../hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageGradient/src/X86LINUX64
\ No newline at end of file
-/bin/bash: mrcImageHelicalConvolution: No such file or directory
+/bin/bash: mrcImageHelicalConvolution: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageMergeFFT: No such file or directory
+/bin/bash: mrcImageMergeFFT: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageMultiCTFCompensation: No such file or directory
+/bin/bash: mrcImageMultiCTFCompensation: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageMultiCTFDetermination: No such file or directory
+/bin/bash: mrcImageMultiCTFDetermination: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageNLMeansFilter: No such file or directory
+/bin/bash: mrcImageNLMeansFilter: そのようなファイルやディレクトリはありません
--- /dev/null
+../../../../../hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageOpticalFlow/src/X86LINUX64
\ No newline at end of file
-<HTML>
-<HEAD>
-<TITLE>mrcImagePad</TITLE>
-</HEAD>
-<BODY>
-<H1>mrcImagePad</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrcImagePad
-Options:
- [-i[nput] In (NULL ).as(inFile ) ] :Essential :Input DataFile
- [-o[utput] Out (NULL ).as(outFile ) ] :Essential :Output DataFile
- [-W[idth] Width (0 ).as(Integer ) ] :Optional :Width[pixel]
- [-H[eight] Height (0 ).as(Integer ) ] :Optional :Height[pixel]
- [-V[alue] Value (0.0 ).as(Real ) ] :Optional :Padding Value(float on avgrage density)
- [-E[xpected]V[alue] ExpectedValue (0.0 ).as(Real ) ] :Optional :Expected Value for Background
- [-AW AvgWnd (2000.0 ).as(Real ) ] :Optional :Averaging Window Size [A]
- [-AWMin AWMin (20 ).as(Real ) ] :Optional :Averaging Window Size[pixel]
- [-AWMax AWMax (22 ).as(Real ) ] :Optional :Averaging Window Size[pixel]
- [-Tilt TiltAxisAngle (0 ).as(Real )
- TiltAngle (0 ).as(Real ) ] :Optional :TiltImage: TiltAxisAngle TiltAngle
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :Configuration File
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Mode -----
-0: Pad average density(Image Center)
-1: Pad average density of x=0 and x=MAX(x)(Image Center)
-2: Pad dynamic average density of x=0 and x=MAX(x)(Image Center)
-3: Pad average density of x=0,MAX(x) and y=0,MAX(y), (Image Center)
-4: Pad average density of bottom left
-5: Pad value (Image Center):Image Value(No Change)
-6: Pad value of bottom left:Image Value(No Change)
-7: Pad value estimated from outside circle
-8: Pad value estimated from outside ring: -AWMin -AMax
-9: Pad value is Value (Currently the same as 5)
-10: Periphery Masking Using ExpectedValue
-11: Normalized Padding using (I(x,y)-avg(bg))/avg(bg))
-12: Normalized Padding using (I(x,y)-avg(I))/sqrt(var(I)))
-13: Normalized Padding using (I(x,y)-avg(bg))/sqrt(var(bg)))
-14: Normalized Padding using (I(x,y)-avg(bg))/(avg(I)-avg(bg))
-15: Tilted Image Circle Average: Need two values of TiltAxisAngle TiltAngle
-16: Pad dynamic average density of x=0,MAX(x) and y=0,Max(y)(Image Center)
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: mrcImagePad: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImagePanoramaCreate: No such file or directory
+/bin/bash: mrcImagePanoramaCreate: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImagePeakSearch: No such file or directory
+/bin/bash: mrcImagePeakSearch: そのようなファイルやディレクトリはありません
-<<<<<<< HEAD
-/bin/bash: mrcImagePerimeterCalc: No such file or directory
-=======
/bin/bash: mrcImagePerimeterCalc: そのようなファイルやディレクトリはありません
->>>>>>> 05144f7ae9b3e43a94f011609484b025af01d7ae
-/bin/bash: mrcImagePrint: No such file or directory
+/bin/bash: mrcImagePrint: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImagePrint3D: No such file or directory
+/bin/bash: mrcImagePrint3D: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImagePut3D: No such file or directory
+/bin/bash: mrcImagePut3D: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>mrcImageROIs</TITLE>
-</HEAD>
-<BODY>
-<H1>mrcImageROIs</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrcImageROIs
-Options:
- [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
- [-I[nformation] Info (NULL ).as(inFile ) ] :Essential :Information
- [-o[utput] Out (NULL ).as(outFile ) ] :Optional :MontageFile
- [-S[hrink] Shrink (NULL ).as(Integer ) ] :Optional :When inputimage was shrunk
- [-width Width (0.0 ).as(Real ) ] :Optional :Width
- [-height Height (0.0 ).as(Real ) ] :Optional :Height
- [-NonPeriodic ] :Optional :Zero Outof Range
- [-PadMode PadMode (0 ).as(Integer ) ] :Optional :PadMode(refer to mrcImagePad)
- [-M[ode] Mode (2 ).as(Integer ) ] :Optional :ImageType:0 byte 1 short 2 float
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Additional Usage -----
------ Mode -----
-0: Nearest
-1: Bilinear
-2: CubicConvolution
------ Information File Format -----
-Shape ShapeInfo1 ... [Additional AdditionalInfo1 ...]
-...............
-Shape: OutFileName Rect blx bly brx bry trx try tlx tly
-Shape: OutFileName TiltRect blx bly brx bry trx try tlx tly
-Shape: OutFileName Rect2 centerx centery width height
-Shape: OutFileName Circle centerx centery radius
-Shape: OutFileName Line startx starty endx endy
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: mrcImageROIs: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageRadialDistribution: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>mrcImageRadialDistribution</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageRadialDistribution</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageRadialDistribution
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-o[utput] Out (stdout ).as(outFile ) ] :Optional :Output: ASCII
+ [-O[utputMRC] Out2 (NULL ).as(outFile ) ] :Optional :Output: MRC
+ [-centre Cx (0.0 ).as(Real )
+ Cy (0.0 ).as(Real ) ] :Optional :[pixel]
+ [-Cs[phere] Csx (0.0 ).as(Real )
+ Csy (0.0 ).as(Real )
+ Csz (0.0 ).as(Real ) ] :Optional :[pixel]
+ [-Avg ] :Optional :flagAvg: Averaged Intensity
+ [-Inv ] :Optional :flagInv: Inversed Intensity
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+>> Mode
+ 0: 2D or 3D(Cylindrical Coordinates)
+ 1: 2D or 3D(Spherical Coordinates)
+</PRE>
+</BODY>
+</HTML>
-/bin/bash: mrcImageSNEstimate: No such file or directory
+/bin/bash: mrcImageSNEstimate: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageShapePCA: No such file or directory
+/bin/bash: mrcImageShapePCA: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageShapePCAFit: No such file or directory
+/bin/bash: mrcImageShapePCAFit: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageShapeRelaxation: No such file or directory
+/bin/bash: mrcImageShapeRelaxation: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageShapeSearch: No such file or directory
+/bin/bash: mrcImageShapeSearch: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageSimilarityEstimate: No such file or directory
+/bin/bash: mrcImageSimilarityEstimate: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageSpatialFrequencyFilter: No such file or directory
+/bin/bash: mrcImageSpatialFrequencyFilter: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageSphereCheck: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>mrcImageSphereCheck</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageSphereCheck</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageSphereCheck
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-o[utput] Out (stdout ).as(outFile ) ] :Optional :Output:
+ [-n[ormalized] OutNOr (NULL ).as(outFile ) ] :Optional :Output: NormalizedImage
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+</PRE>
+</BODY>
+</HTML>
--- /dev/null
+../../../../../hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageStreamLine/src/X86LINUX64
\ No newline at end of file
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Essential :RealSpaceCalculating
[-LabelingMode labelingmode (0 ).as(Integer ) ] :Optional :LabelingMode
- [-max[value] max (800 ).as(Integer ) ] :Optional :Density Max value:Support Constraint()
- [-min[value] min (200 ).as(Integer ) ] :Optional :Density Min value:Support Constraint()
+ [-max[value] max (800 ).as(Integer ) ] :Optional :Density Max value:Support Constraint(%)
+ [-min[value] min (200 ).as(Integer ) ] :Optional :Density Min value:Support Constraint(%)
[-sh[ape] shape (0 ).as(Integer ) ] :Optional :Shape:0(Rectangule),1(Globe)
[-h[alf]v[alue]p[oint]hvp (0.0 ).as(Real ) ] :Optional :Half value point(/[A])
[-Inverse ] :Optional :Inverse
--- /dev/null
+../../../../../hostdepend/X86LINUX64/src/Tools/mrcImage/mrcImageSuperResolutionByOpticalFlow/src/X86LINUX64
\ No newline at end of file
-<<<<<<< HEAD
-/bin/bash: mrcImageSurfaceAreaCalc: No such file or directory
-=======
/bin/bash: mrcImageSurfaceAreaCalc: そのようなファイルやディレクトリはありません
->>>>>>> 05144f7ae9b3e43a94f011609484b025af01d7ae
-/bin/bash: mrcImageTiltAxisSearchHelp: No such file or directory
+/bin/bash: mrcImageTiltAxisSearchHelp: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageUnbentROI: No such file or directory
+/bin/bash: mrcImageUnbentROI: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageUnsharpening: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>mrcImageUnsharpening</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageUnsharpening</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageUnsharpening
+Options:
+ [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input: mrcImage
+ [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output: mrcImage
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+--UnsharpeningMode--
+0: 0 -1 0
+ -1 5 -1
+ 0 -1 0
+1:-1 -1 -1
+ -1 9 -1
+ -1 -1 -1
+2: 1 -2 1
+ -2 5 -2
+ 1 -2 1
+</PRE>
+</BODY>
+</HTML>
-/bin/bash: mrcImageVarianceAnalysis: No such file or directory
+/bin/bash: mrcImageVarianceAnalysis: そのようなファイルやディレクトリはありません
[-D[elta] Delta (5.0 ).as(Real ) ] :Optional :Delta[A]
[-R[ange] MinVol (0.0 ).as(Real )
MaxVol (200.0 ).as(Real )
- DeltaVol (10.0 ).as(Real ) ] :Optional :vol
+ DeltaVol (10.0 ).as(Real ) ] :Optional :vol%
[-I[nverse] ] :Optional :Inverse
[-format Format (ContourLevel(%3g): %g %lu).as(StringAll ) ] :Optional :Format
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
-/bin/bash: mrcMultiFFTCentralSectionsSigmaCalc: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>mrcMultiFFTCentralSectionsSigmaCalc</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcMultiFFTCentralSectionsSigmaCalc</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcMultiFFTCentralSectionsSigmaCalc
+Options:
+ [-i[nput] In (NULL ).as(inFileNoOpen::mrcImage)
+ PathIn (./ ).as(String ) ] :Essential :Input:2DFT
+ [-i[nput]L[ikelihood]InLikelihood (NULL ).as(inFileListNoOpen )
+ PathL (./ ).as(String ) ] :Essential :Input: LikelihoodList
+ [-i[nput]3d[SectionList]In3D (NULL ).as(inFileListNoOpen )
+ Path3D (./ ).as(String ) ] :Essential :Input: CentralSectionList
+ [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output: 2DSigma
+ [-EulerMode EulerMode (YOYS ).as(String ) ] :Optional :Input: EulerMode
+ [-Rot1 Rot1Start (0.0 ).as(Real )
+ Rot1End (360.0 ).as(Real )
+ Rot1Delta (10 ).as(Real ) ] :Optional :OutputDataFile
+ [-Rot2 Rot2Start (0.0 ).as(Real )
+ Rot2End (360.0 ).as(Real )
+ Rot2Delta (10 ).as(Real ) ] :Optional :OutputDataFile
+ [-Rot3 Rot3Start (0.0 ).as(Real )
+ Rot3End (360.0 ).as(Real )
+ Rot3Delta (10 ).as(Real ) ] :Optional :OutputDataFile
+ [-trans[late] TransX (0.0 ).as(Real )
+ TransY (0.0 ).as(Real ) ] :Optional :Input: Translation
+ [-InterpMode InterpMode (0 ).as(Integer ) ] :Optional :Interpolation Mode
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+</PRE>
+</BODY>
+</HTML>
-/bin/bash: mrcRefNormalizing: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>mrcRefNormalizing</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcRefNormalizing</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcRefNormalizing
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+</PRE>
+</BODY>
+</HTML>
-/bin/bash: mrcView: No such file or directory
+/bin/bash: mrcView: そのようなファイルやディレクトリはありません
-/bin/bash: molvieMrcViewer: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>molvieMrcViewer</TITLE>
+</HEAD>
+<BODY>
+<H1>molvieMrcViewer</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: molvieMrcViewer
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
+ [-o[utput] Out (NULL ).as(outFile ) ] :Optional :OutputDataFile
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+</PRE>
+</BODY>
+</HTML>
-/bin/bash: pdbAtomSection: No such file or directory
+/bin/bash: pdbAtomSection: そのようなファイルやディレクトリはありません
-/bin/bash: pdbHomologySearch: No such file or directory
+/bin/bash: pdbHomologySearch: そのようなファイルやディレクトリはありません
-/bin/bash: pdbRhoFit: No such file or directory
+/bin/bash: pdbRhoFit: そのようなファイルやディレクトリはありません
-/bin/bash: pdbRhoFitTm: No such file or directory
+/bin/bash: pdbRhoFitTm: そのようなファイルやディレクトリはありません
-/bin/bash: pdbTempFactorSet: No such file or directory
+/bin/bash: pdbTempFactorSet: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>pdbTrans</TITLE>
-</HEAD>
-<BODY>
-<H1>pdbTrans</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: pdbTrans
-Options:
- [-i[nput] inFile (NULL ).as(inFile ) ] :Essential :Input: DataFile
- [-o[utput] outFile (NULL ).as(outFile ) ] :Essential :Output: DataFile
- [-M[atrix] matFile (NULL ).as(inFile ) ] :Optional :Input: MatrixFile[4][4]
- [-E[uler]A[ngle] RotMode (YOYS ).as(String )
- Rot1 (0.0 ).as(Real )
- Rot2 (0.0 ).as(Real )
- Rot3 (0.0 ).as(Real ) ] :Optional :Input:
- [-cuda cudaDeviceID (0 ).as(Integer ) ] :Optional :cuda
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
->>> Matrix3D File Format y = Ax + b<<<
-a11 a21 a31 : Rotation Array : y=Ax
-a12 a22 a32
-a13 a23 a33
-b1 b2 b3 : Translation Array : y = x + b
---- Attention ---
-If both options of -M and -EA are set,
- first, translation and rotation by -M will be performed
- then, rotation by -EA will be done.
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: pdbTrans: そのようなファイルやディレクトリはありません
-/bin/bash: pdbView: No such file or directory
+/bin/bash: pdbView: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageNeuralNetParticleExtraction: No such file or directory
+/bin/bash: mrcImageNeuralNetParticleExtraction: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageNeuralNetParticleLearning: No such file or directory
+/bin/bash: mrcImageNeuralNetParticleLearning: そのようなファイルやディレクトリはありません
-/bin/bash: CheckCommonLineData: No such file or directory
+/bin/bash: CheckCommonLineData: そのようなファイルやディレクトリはありません
-/bin/bash: CheckOfOrientation: No such file or directory
+/bin/bash: CheckOfOrientation: そのようなファイルやディレクトリはありません
-/bin/bash: CheckOrientationByDegree: No such file or directory
+/bin/bash: CheckOrientationByDegree: そのようなファイルやディレクトリはありません
-/bin/bash: CommonLineCalculation: No such file or directory
+/bin/bash: CommonLineCalculation: そのようなファイルやディレクトリはありません
-/bin/bash: LCalculationForOrientationSearch: No such file or directory
+/bin/bash: LCalculationForOrientationSearch: そのようなファイルやディレクトリはありません
-/bin/bash: ProjectionDirectionMapCreate: No such file or directory
+/bin/bash: ProjectionDirectionMapCreate: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>WeightCalculationOfCommonLineSearch</TITLE>
-</HEAD>
-<BODY>
-<H1>WeightCalculationOfCommonLineSearch</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: WeightCalculationOfCommonLineSearch
-Options:
- [-I[nput] In (NULL ).as(inFileList ) ] :Essential :InputDataFileList
- [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
- [-L[ength]T[hreshold]M[ode]LengthThresholdMode (0 ).as(Integer ) ] :Essential :Length threshold mode in LengthCorrelation
- [-L[ength]T[hreshold]R[atio]LengthThresholdRatio(0.25 ).as(Real ) ] :Optional :Length threshold ratio in LengthCorrelation : -LTM=0
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
-
------ Mode -----
--m :
- 0 : Addition weight
- 1 : Multiplication weight
-
------ input file format -----
-filename(sin) rotationalmode angle angle angle
- . . . . .
- . . . . .
- . . . . .
- . . . . .
-
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: WeightCalculationOfCommonLineSearch: そのようなファイルやディレクトリはありません
-/bin/bash: WeightCalculationOfCommonLineSearchByAllSinogram: No such file or directory
+/bin/bash: WeightCalculationOfCommonLineSearchByAllSinogram: そのようなファイルやディレクトリはありません
-/bin/bash: calcCommonLine: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>calcCommonLine</TITLE>
+</HEAD>
+<BODY>
+<H1>calcCommonLine</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: calcCommonLine
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Optional :InputEulerAnglesList
+ [-R[ot]1 EMode1 (YOYS ).as(String )
+ Rot1_1 (0.0 ).as(Real )
+ Rot1_2 (0.0 ).as(Real )
+ Rot1_3 (0.0 ).as(Real ) ] :Optional :Input: RotAngle1[degree]
+ [-R[ot]2 EMode2 (YOYS ).as(String )
+ Rot2_1 (0.0 ).as(Real )
+ Rot2_2 (0.0 ).as(Real )
+ Rot2_3 (0.0 ).as(Real ) ] :Optional :Input: RotAngle2[degree]
+ [-o[utput] Out (stdout ).as(outFile ) ] :Optional :Output:Degrees
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+</PRE>
+</BODY>
+</HTML>
-/bin/bash: commonLinesSearchByVoting: No such file or directory
+<HTML>
+<HEAD>
+<TITLE>commonLinesSearchByVoting</TITLE>
+</HEAD>
+<BODY>
+<H1>commonLinesSearchByVoting</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: commonLinesSearchByVoting
+Options:
+ [-i[nput] In (NULL ).as(inFile ) ] :Optional :InputCorrelationMapList
+ [-i[nput]c[ommonLines]InC (NULL ).as(inFile ) ] :Optional :InputCommonLinesList
+ [-i[nput]c[orrect]c[ommonLines]InCC (NULL ).as(inFile ) ] :Optional :InputCorrectCommonLinesList
+ [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputFilteredCommonLinesList
+ [-o[utput]a[ll] OutA (NULL ).as(outFile ) ] :Optional :OutputAllCommonLinesList
+ [-o[utput]d[etecting]r[ate]OutDR (NULL ).as(outFile ) ] :Optional :OutputDetectingRate
+ [-o[utput]d[etecting]r[ate]a[ll]OutDRA (NULL ).as(outFile ) ] :Optional :OutputDetectingRateALL
+ [-o[utput]p[eaks]h[istgram]OutPH (NULL ).as(outFile ) ] :Optional :OutputPeaksHistgram
+ [-e[stimation]n[umber]en (1 ).as(Integer ) ] :Optional :EstimationNumber
+ [-th[resholdLevel] th (1 ).as(Integer ) ] :Optional :ThresholdLevel
+ [-histgramCreate[Flag] ] :Optional :HistgramCreateFlag
+ [-extend[VotingFlag] ] :Optional :ExtendVotingFlag
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+Common lines are filtered only top G*100/sqrt(N) %, where N is the number of projections.
+-extend Option
+ Execute extended voting.
+-m Option
+ 0: normal
+ 1: self voting (each angle histgram peak is multiplyed by its correlation value)
+-th Option
+ :
+ -1: G = 2^(-1)
+ 0: G = 2^0
+ 1: G = 2^1
+ 2: G = 2^2
+ :
+-en Option
+ Estimation number of common line in a map.
+ Running time is proportional to this number.
+ Default; 1: the largest value in a correlation map is detected as common line.
+MapList Format
+ numOfProjection1 numOfProjection2 mapFileName
+ : : :
+CLinesList Format
+ numOfProjection1 numOfProjection2 [ degOfProjection1 degOfProjection2 degDiff cor ] mapFileName
+ : : : : : : :
+Voting Algorithm by Amit Singer et al (2010),
+"Detecting consistent common lines in cryo-EM by voting " (doi:10.1016/j.jsb.2009.11.003)
+----------------------------
+</PRE>
+</BODY>
+</HTML>
-<HTML>
-<HEAD>
-<TITLE>ll2ltlg</TITLE>
-</HEAD>
-<BODY>
-<H1>ll2ltlg</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: ll2ltlg
-Options:
- [-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
- [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-t[itle] Title (NULL ).as(String ) ] :Optional :Title
- [-l[lMax] llMax (1 ).as(Integer ) ] :Optional :llMax
- [-D[elRInv] delRInv (1.0 ).as(Real ) ] :Optional :delRInv[A]
- [-R[MaxInv] RMaxInv (1.0 ).as(Real ) ] :Optional :RMaxInv[A]
- [-d[elr] delr (1.0 ).as(Real ) ] :Optional :delr[A]
- [-r[Max] rMax (1.0 ).as(Real ) ] :Optional :rMax[A]
- [-f[lagOutputInfo] flagOutputInfo (0 ).as(Integer ) ] :Optional :flagOutputInfo
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
->> controlFile Format : replaced by other options which are definitely shown.
-
-Title [char*80]
-InFile [char*80]
-OutFile[char*80]
-InveseOfllDataSamplingSize[Angstrom] llMax llDataMuxiumResolution[Angstrom]
-ltlgDataSamplingSize[Angstrom] ltlgDataMaximumRadius[Angstrom]
-IList(mode)
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: ll2ltlg: そのようなファイルやディレクトリはありません
-/bin/bash: llExtract: No such file or directory
+/bin/bash: llExtract: そのようなファイルやディレクトリはありません
-/bin/bash: llExtractWithLayerSeparation: No such file or directory
+/bin/bash: llExtractWithLayerSeparation: そのようなファイルやディレクトリはありません
-/bin/bash: llExtractWithLayerSeparationServer: No such file or directory
+/bin/bash: llExtractWithLayerSeparationServer: そのようなファイルやディレクトリはありません
-/bin/bash: llExtractWithLayerSeparationSingle: No such file or directory
+/bin/bash: llExtractWithLayerSeparationSingle: そのようなファイルやディレクトリはありません
-/bin/bash: ltlg2mrc: No such file or directory
+/bin/bash: ltlg2mrc: そのようなファイルやディレクトリはありません
-/bin/bash: ltlg2ps: No such file or directory
+/bin/bash: ltlg2ps: そのようなファイルやディレクトリはありません
-/bin/bash: marker2Dto3DEstimator: No such file or directory
+/bin/bash: marker2Dto3DEstimator: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>mrc2Dto3D</TITLE>
-</HEAD>
-<BODY>
-<H1>mrc2Dto3D</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrc2Dto3D
-Options:
- [-i[nput] In (NULL ).as(inFile ) ] :Optional :InputDataFile
- [-I[nput] In2 (NULL ).as(inFileListNoOpen ) ] :Optional :InputDataFile
- [-each ] :Optional :Read each projection file if necessary, not at once.
- [-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
- [-O[utput] Out2 (NULL ).as(outFile ) ] :Optional :OutputDataFile[2DMulti]
- [-Rmax Rmax (1.0 ).as(Real ) ] :Optional :Rmax: High Cut [/A]
- [-single single (1 ).as(Integer ) ] :Optional :SingleTiltMode
- [-singleFilter singleFilter (0 ).as(Integer ) ] :Optional :SingleFilterMode
- [-InterpolationMode InterpolationMode (1 ).as(Integer ) ] :Optional :InterpolationMode
- [-Double ] :Optional :DoubleTiltMode
- [-DoubleCounter DoubleCounter (NULL ).as(outFile ) ] :Optional :DoubleCounter
- [-CounterThreshold CounterThreshold (1e-6 ).as(Real ) ] :Optional :CounterThreshold
- [-CounterThresholdModeCounterThresholdMode(0 ).as(Integer ) ] :Optional :CounterThresholdMode
- [-WeightMode WeightMode (0 ).as(Integer ) ] :Optional :WeightMode
- [-thicknessWeight ] :Optional :ThicknessWeight
- [-Sub[Sampling] SubSampling (1 ).as(Integer ) ] :Optional :SubSampling: [pixel]
- [-PlusXrot ] :Optional :plus x-rotation by 180 for rasmol.
- [-N Nx (0 ).as(Integer )
- Ny (0 ).as(Integer )
- Nz (0 ).as(Integer ) ] :Optional :OutputSize
- [-SIRT ] :Optional :by SIRT
- [-max[Iter] maxIter (30 ).as(Integer ) ] :Optional :MaxIteration for SIRT
- [-rms rms (1.0 ).as(Real ) ] :Optional :Ending Conditions: rms for SIRT
- [-CTF[Info] CTFInfo (NULL ).as(inFileList ) ] :Optional :CTFInfo: for SIRT
- [-pthread pthreadMax (1 ).as(Integer ) ] :Optional :pthread: max
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Additional Usage -----
--m Option
- 0:SimpleBackProjection
- 1:FilteredBackProjection(Fourier Space)
- 2:WeightedBackProjection(Real Space)
--single 0|1
- 0: tilt axis is parallel to x-axis
- 1: tilt axis is parallel to y-axis
--singleFilter 0|1|2
- 0: simple rho filter
- 1: Ram-Lak Filter
- 2: Shepp-Logan Filter
--Double
- Double Tilt
--WeightMode
- 1 : RealSpace: Circle(same density)
- 2 : RealSpace: Circle(weighted density)
- 3 : RealSpace: Square(weighted density)
- 4 : Fourier Space : Plane(same density) -CounterThreshold 0.5
- 5 : Fourier Space : Plane(Linear Gradient)-CounterThreshold 0.5
- 6 : Fourier Space : Plane(Cosine Gradient) Current Recommende using -CounterThreshold 0.5
--------------------------------
--I Option file format
-filename0 RotationOrder0 rot1 rot2 rot3
-filename1 RotationOrder1 rot1 rot2 rot3
-.......................................
->>> RotationOrder : Eular Angle Expression <<<
-Example: YOYS : RotY(rot3)RotX(rot2)RotY(rot1)*v
-First Rotation : y-axis : Y: Y : [X|Y|Z] Axis used initially
-Second Rotation : x-axis : O: Odd : [O|E] Parity of axis permutation
-Last Rotation : z-axis : Y: Yes : [Y|N] Repetition of initial axis as last
-v1 = A v0 : S: Staic : [S|R] Frame from which axes are taken
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: mrc2Dto3D: そのようなファイルやディレクトリはありません
-/bin/bash: mrc2Dto3DforVariation: No such file or directory
+/bin/bash: mrc2Dto3DforVariation: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageOrientationSearch: No such file or directory
+/bin/bash: mrcImageOrientationSearch: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageOrientationSearchByHigherSelection: No such file or directory
+/bin/bash: mrcImageOrientationSearchByHigherSelection: そのようなファイルやディレクトリはありません
-/bin/bash: mrcImageOrientationSearchByHybridization: No such file or directory
+/bin/bash: mrcImageOrientationSearchByHybridization: そのようなファイルやディレクトリはありません
-<HTML>
-<HEAD>
-<TITLE>mrcImageOrientationSearchBySimultaneousMinimization</TITLE>
-</HEAD>
-<BODY>
-<H1>mrcImageOrientationSearchBySimultaneousMinimization</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: mrcImageOrientationSearchBySimultaneousMinimization
-Options:
- [-I[nputFileList] In (NULL ).as(inFileListNoOpen ) ] :Essential :InputDataFileList
- [-o[utput] Out (NULL ).as(outFileNoOpen ) ] :Essential :OutputDataFile
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
- [-dt[heta] dtheta (1 ).as(Real ) ] :Optional :dtheta
- [-dp[si] dpsi (1 ).as(Real ) ] :Optional :dpsi
- [-m[odeof]s[election]ms (0 ).as(Integer ) ] :Optional :modeofselection
- [-i[nitial]r[andom]d[ata]ird (1 ).as(Integer ) ] :Optional :InitialRandomData
- [-M[ax]C[ount] MC (100 ).as(Integer ) ] :Optional :MaxCount
- [-F[ileName]H[eader] FileNameHeader (EulerAngle).as(String ) ] :Optional :FileNameHeader
- [-m[odeof]i[nitial]d[ada]mid (0 ).as(Integer ) ] :Optional :modeofinitialdata
- [-i[nputFile]i[nitial]d[ata]InInitial (NULL ).as(inFile ) ] :Optional :InputDataFileOfInitialData
- [-m[odeof]s[tart]p[oint]msp (0 ).as(Integer ) ] :Optional :mode of start point
- [-m[odeof]a[ngular]a[rea]maa (0 ).as(Integer ) ] :Optional :mode of angular area
- [-p[revious]dt[heta] pdtheta (0 ).as(Integer ) ] :Optional :previous dtheta
- [-p[revious]dp[si] pdpsi (0 ).as(Integer ) ] :Optional :previous dpsi
- [-m[ode]L[calculation]modeL (0 ).as(Integer ) ] :Optional :Mode of L calculation
- [-m[ode]T[hreshold]A[ngularweight]modeTA (0 ).as(Integer ) ] :Optional :Mode of Threshold of AngularWeight
- [-m[ode]c[alculation]a[rea]modeCA (0 ).as(Integer ) ] :Optional :mode of Lvalue of calculation area
- [-t[hreshold]c[alculation]a[rea]TCA (0 ).as(Real ) ] :Optional :Threshold of Lvalue of calculation area
- [-m[ode]f[ix] modeF (0 ).as(Integer ) ] :Optional :mode of fix
-
------ ModeSelection -----
--ms : 0 : random
- : 1 : myself (-ird)
-
------ Mode --------------
--m : 0 : input data --> sinogram
- : 1 : --> sinogramFT
-
------ Angle -------------
--dt : DEGREE
--dp : DEGREE
--pdt : DEGREE
--pdp : DEGREE
-
------ ModeOfInitialData -------------
--mid : 0 : There is not initial data
- 1 : There is initial data (-iid)
-
------ ModeOfLcalculation -------------
--mL : 0 : differential of length
- 1 : differential of phase
- 2 : addition to derivation1D (multiply)
- 3 : addition to derivation1D (difference)
-
------ ModeOfThresholdAngularWeight -------------
--mTA : 0 : 1.0e-4
- 1 : 1 degree
- 2 : dpsi
-
------ ModeOfStartPoint -------------
--msp : 0 : origin
- 1 : initial data (-iid)
-
------ ModeOfAngularArea -------------
--maa : 0 : all area
- 1 : aroud previous delta (-pdt -pdp)
-
------ ModeOfCalculationArea -------------
--mca : 0 : all area
- 1 : cut under -tca(1/angstrom)
-
------ ModeOfFix -------------
--mf : 0 : don't fix one plane
- 1 : fix one plane (first file is fixed)
-
-</PRE>
-</BODY>
-</HTML>
+/bin/bash: mrcImageOrientationSearchBySimultaneousMinimization: そのようなファイルやディレクトリはありません
-/bin/bash: mrcRadon2Dto3D: No such file or directory
+/bin/bash: mrcRadon2Dto3D: そのようなファイルやディレクトリはありません
-/bin/bash: energyTransferModelCheck: No such file or directory
+/bin/bash: energyTransferModelCheck: そのようなファイルやディレクトリはありません
-/bin/bash: muscleSimulation: No such file or directory
+/bin/bash: muscleSimulation: そのようなファイルやディレクトリはありません
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