src/*/*/.Source
#
+hostdepend/X86MAC64/
+
+#
*.o
*.debugo
*.debug
EOS_GIT_REPOSITRY_OTHERS= git.sourceforge.jp:/gitroot/eos/others.git
EOS_GIT_REPOSITRY_OTHERS_NOUSER=git://git.sourceforge.jp/gitroot/eos/others.git
+EOS_GIT_REPOSITRY_HOSTDEPEND=git.sourceforge.jp:/gitroot/eos/hostdepend
help::
@echo ">> Help"
git-add-all:: git-add git-add-data git-add-optional git-add-tutorial git-add-others
-git-add::
+git-add::
git add -v --all .
+git-add-hostdepend::
+ git subtree add --prefix=hostdepend/$${EOS_HOSTDIR} --squash $${EOS_GITUSER}@$(EOS_GIT_REPOSITRY_HOSTDEPEND)$${EOS_HOSTDIR}.git master
+
git-add-optional::
cd optional; git add -v --all .
git-push-all:: git-push git-push-data git-push-optional git-push-tutorial git-push-others
-git-push::
+git-push::git-push-hostdepend
# git push origin master --tags
@export DIRECTORYNAME=./; \
export ORIGINNAME=origin; \
make git-push-with-check;
+git-push-hostdepend::
+ git subtree push --prefix=hostdepend/$${EOS_HOSTDIR} --squash $${EOS_GITUSER}@$(EOS_GIT_REPOSITRY_HOSTDEPEND)$${EOS_HOSTDIR}.git master
+
git-push-optional::
# cd optional; git push optional master --tags
@export DIRECTORYNAME=optional; \
--- /dev/null
+../sbin/MachineIndependent
\ No newline at end of file
set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
+set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
set auto_index(sectionClear) [list source [file join $dir SectionUtil.wish]]
set auto_index(sectionChange) [list source [file join $dir SectionUtil.wish]]
set auto_index(unitCellRecreate) [list source [file join $dir UnitCell.wish]]
-set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
--- /dev/null
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/ctfEnvelopFunctionEstimate.h \
+ /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/File.h \
+ /Users/tacyas/Eos/include/Memory.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
+ /usr/include/limits.h /usr/include/machine/limits.h \
+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+ /usr/include/sys/syslimits.h
+ctfEnvelopFunctionEstimate.o: ctfEnvelopFunctionEstimate.c \
+ /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/ctfEnvelopFunctionEstimate.h \
+ /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/Memory.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
+ /usr/include/limits.h /usr/include/machine/limits.h \
+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+ /usr/include/sys/syslimits.h /Users/tacyas/Eos/include/ctfInfo.h \
+ /Users/tacyas/Eos/include/mrcImage.h \
+ /Users/tacyas/Eos/include/Matrix3D.h \
+ /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
+ /Users/tacyas/Eos/include/./lctfDetermination.h \
+ /Users/tacyas/Eos/include/./powerspectraTangentLine.h \
+ /Users/tacyas/Eos/include/./ctfInfoWrite2.h \
+ /Users/tacyas/Eos/include/./lmrcFSInfoScatteringAngularDistributionAverageSection.h
+init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/ctfEnvelopFunctionEstimate.h \
+ /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/File.h \
+ /Users/tacyas/Eos/include/Memory.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
+ /usr/include/limits.h /usr/include/machine/limits.h \
+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+ /usr/include/sys/syslimits.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ ../inc/config.h ../inc/../inc/ctfEnvelopFunctionEstimate.h
+util.o: util.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ ../inc/config.h ../inc/../inc/ctfEnvelopFunctionEstimate.h
--- /dev/null
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo
+
+MODULESCUDAGDB = \
+ $(OBJECTNAME).cudagdb.o \
+ init.cudagdb.o \
+ argCheck.cudagdb.o \
+ usage.cudagdb.o \
+ util.cudagdb.o
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+ @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+ then \
+ echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+ then \
+ echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+ then \
+ echo "MICO"; \
+ echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+ then \
+ echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ; \
+ $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ; \
+ fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+ @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+ then \
+ echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+ then \
+ echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+ then \
+ echo "MICO"; \
+ echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+ then \
+ echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+ echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+ $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64
\ No newline at end of file
--- /dev/null
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/mrcImageShapeSearch.h \
+ /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/File.h \
+ /Users/tacyas/Eos/include/Memory.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
+ /usr/include/limits.h /usr/include/machine/limits.h \
+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+ /usr/include/sys/syslimits.h
+init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/mrcImageShapeSearch.h \
+ /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/File.h \
+ /Users/tacyas/Eos/include/Memory.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
+ /usr/include/limits.h /usr/include/machine/limits.h \
+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+ /usr/include/sys/syslimits.h
+mrcImageShapeSearch.o: mrcImageShapeSearch.c /usr/include/stdio.h \
+ /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+ ../inc/../inc/mrcImageShapeSearch.h \
+ /Users/tacyas/Eos/include/genUtil.h \
+ /Users/tacyas/Eos/include/mrcImage.h \
+ /Users/tacyas/Eos/include/Matrix3D.h \
+ /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
+ /Users/tacyas/Eos/include/ctfInfo.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ ../inc/config.h ../inc/../inc/mrcImageShapeSearch.h
+util.o: util.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+ /usr/include/sys/_symbol_aliasing.h \
+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+ /usr/include/stdlib.h /usr/include/sys/wait.h \
+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+ /usr/include/mach/i386/_structs.h \
+ /usr/include/sys/_types/_sigaltstack.h \
+ /usr/include/sys/_types/_ucontext.h \
+ /usr/include/sys/_types/_pthread_attr_t.h \
+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+ /usr/include/sys/resource.h \
+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+ ../inc/config.h ../inc/../inc/mrcImageShapeSearch.h
--- /dev/null
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo
+
+MODULESCUDAGDB = \
+ $(OBJECTNAME).cudagdb.o \
+ init.cudagdb.o \
+ argCheck.cudagdb.o \
+ usage.cudagdb.o \
+ util.cudagdb.o
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+ @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+ then \
+ echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+ then \
+ echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+ then \
+ echo "MICO"; \
+ echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+ then \
+ echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ; \
+ $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ; \
+ fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+ @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+ then \
+ echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+ then \
+ echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+ then \
+ echo "MICO"; \
+ echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+ @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+ then \
+ echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
+ fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+ echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+ $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64
\ No newline at end of file
int nx;
int ny;
int nz;
- int radius; /* for Disk*/
+ int radius; /* for Disk/Sphere/Cylinder*/
/* SE feature */
int mode;
void lmrcImageMorphologyStructuringElement3DCross(mrcImage* out, int mode);
void lmrcImageMorphologyStructuringElement3DCubic(mrcImage* out, int mode);
void lmrcImageMorphologyStructuringElement3DSphere(mrcImage* out, int r, int n, int mode);
-void lmrcImageMorphologyStructuringElementSphere(mrcImage* out, int r, int n, int mode);
+void lmrcImageMorphologyStructuringElementSphere(mrcImage* out, int r, int nx, int ny, int nz, int mode);
+void lmrcImageMorphologyStructuringElement2DRectangle(mrcImage* out, int nx, int ny, int mode);
+void lmrcImageMorphologyStructuringElement3DCuboid(mrcImage* out, int nx, int ny, int nz, int mode);
+void lmrcImageMorphologyStructuringElement3DCylinder(mrcImage* out, int r, int nx, int ny, int nz, int mode);
/* lmrcImageErosion.c */
void lmrcImageErosion(mrcImage* dst, mrcImage* src, lmrcImageMorphologyInfo linfo, int mode);
ctfInfo* ini,
lctfDetermineInfo* linfo,
int mode);
+extern void TangentLinePrint(FILE* fpt, floatVector* spacing,
+ floatVector* scatter,
+ float** belowCoefficient,
+ float** aboveCoefficient,
+ lctfDetermineInfo* linfo,
+ int mode);
/*prototype end*/
void
-lctfDeterminationbyMinSquareMethods(ctfInfo* res, mrcImage* mrc, ctfInfo* ini,long* MaxThonRing,lctfDetermineInfo* linfo,floatVector* defocus,floatVector* Eres, long mode)
+lctfDeterminationbyMinSquareMethods(ctfInfo* res, mrcImage* mrc, ctfInfo* ini,long* MaxThonRing, lctfDetermineInfo* linfo, floatVector* defocus, floatVector* Eres, long mode)
{
floatVector* scatter;
floatVector* spacing;
Maximum75 = floatVectorInit(NULL,spacing->size);
Maximum77 = floatVectorInit(NULL,spacing->size);
- if(1 == mode){/*Noise Estimation*/
+ if(1 == mode){ /*Noise Estimation*/
TangentLine(spacing, scatter, belowCoefficient, aboveCoefficient, ini, linfo,-1);
for(i=(0+Differentialaround); i<(spacing->size-Differentialaround); i++){
Noise->data[i] = belowCoefficient[linfo->degree][0];
--- /dev/null
+/*
+# powerspectraTangentLine : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : powerspectraTangentLine
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+/* $Log$ */
+static char __sccs_id[] = "%Z%lctfDetermination ver%I%; Date:%D% %Z%";
+#include <stdio.h>
+#include <stdlib.h>
+#include <math.h>
+#include "./powerspectraTangentLine.h"
+#include "./ctfInfoWrite2.h"
+#define DEBUG
+#include "genUtil.h"
+#include "Vector.h"
+#include "nr2.h"
+#include "Memory.h"
+
+typedef struct stepInfo{
+ float min;
+ float max;
+ float step;
+ long Number;
+}stepInfo;
+
+typedef struct iterationInfo{
+ long degree;
+ long CutLowSize;
+ long CutHighSize;
+ float CutLine;
+ float Emin;
+ float Emax;
+}iterationInfo;
+
+
+double __power(double x,int a)
+{
+ int i;
+ double y = 1.0;
+
+ for(i=0 ; i<a ; i++){
+ y *= x;
+ }
+ return(y);
+}
+
+void __stepNumberCulc(stepInfo *sInfo, long degree)
+{
+ long i;
+ for(i=0 ; i<= degree ; i++){
+ sInfo[i].Number = (long) ((sInfo[i].max - sInfo[i].min )/ sInfo[i].step);
+ if(sInfo[i].Number < 1){
+ sInfo[i].Number = 1;
+ }
+ }
+}
+
+/*mode = 1 belowLine
+ = -1 aboveLine*/
+void
+__CoefficientDetermine(floatVector* spacing ,floatVector* Plog ,floatVector* tmpcoefficient ,stepInfo* sInfo,iterationInfo* iInfo, float mode)
+{
+ long i,j,k,l;
+ long AdvanceRatio = 1;
+ long Number[iInfo->degree+1];
+ unsigned long long int belowN;
+ unsigned long long int fewerN;
+ unsigned long n;
+ unsigned long long int sum = 1;
+ float coefficient[iInfo->degree+1];
+ float E;
+ float minTangent;
+ floatVector* Tangent;
+
+/* if(mode == 1.0){
+ fprintf(stderr,"BelowLineEstimation ");
+ }
+ else if(mode == -1.0){
+ fprintf(stderr,"AboveLineEstimation ");
+ }
+ else{
+ fprintf(stderr,"CoefficientDetermine don't support this mode\nprogram stop");
+ exit(1);
+ }
+
+ fprintf(stderr,"degree:%2ld\n",iInfo->degree);
+*/
+ Tangent = floatVectorInit(NULL,spacing->size);
+
+ iInfo-> Emax;
+ for(j=0 ; j<=iInfo->degree ; j++){
+ sum *= sInfo[j].Number;
+ //fprintf(stderr,"StepCondition[%2ld] Min: %+8.3lf Max: %+8.3lf StepSize: %6.3f StepNumber: %4ld\n",j,sInfo[j].min,sInfo[j].max,sInfo[j].step,sInfo[j].Number);
+ }
+ //fprintf(stderr,"sum:%llu\n",sum);
+
+ for(n=0 ; n< sum; n++){
+ E = 0.0;
+ minTangent = 0.0;
+ for(j=0 ; j<=iInfo->degree ; j++){
+ fewerN = 1;
+ for(k=0 ; k<j ; k++){
+ fewerN *= sInfo[k].Number;
+ }
+ belowN = fewerN * sInfo[j].Number;
+ coefficient[j] = (long)((n % belowN)/fewerN)* sInfo[j].step + sInfo[j].min;
+ minTangent += coefficient[j]*__power(spacing->data[iInfo->CutHighSize],j);
+ }
+
+ if(minTangent < iInfo->CutLine){
+ E = iInfo->Emax;
+ }
+
+ for(i=iInfo->CutLowSize ; i<=iInfo->CutHighSize ; i++){
+ Tangent->data[i] = coefficient[0];
+ for(j=1 ; j<=iInfo->degree ; j++){
+ Tangent->data[i] += coefficient[j]*__power(spacing->data[i],j);
+ }
+ E += fabs(Tangent->data[i] - Plog->data[i]);
+
+ if((Tangent->data[i] - Plog->data[i])*mode > 0 || Tangent->data[i] < iInfo->CutLine || E>iInfo->Emin){
+ E = iInfo->Emax;
+ break;
+ }
+ }
+
+
+ if(E <= iInfo->Emin){
+ for(j=0 ; j<=iInfo->degree ; j++){
+ tmpcoefficient->data[j] = coefficient[j];
+ //fprintf(stdout,"%2ld:%+10.3e ",j,tmpcoefficient->data[j]);
+ }
+ //fprintf(stdout,"E=%10.3e Emin=%10.3e \n",E,iInfo->Emin);
+ iInfo->Emin = E;
+ }
+ }
+/*
+ fprintf(stderr,"result: ");
+ for(j=0 ; j<=iInfo->degree ; j++){
+ fprintf(stderr,"%2ld: %+10.3e ",j,tmpcoefficient->data[j]);
+ }
+ fprintf(stderr,"Emin= %10.3e\n",iInfo->Emin);
+*/
+}
+
+/*mode 0 above & below
+ -1 below
+ 1 above*/
+void
+TangentLine(floatVector* spacing, floatVector* scatter, float** belowCoefficient, float** aboveCoefficient, ctfInfo* ini, lctfDetermineInfo* linfo, int mode)
+{
+ long i,j;
+ floatVector* tmpcoefficient;
+ float E;
+ float Pmax = 0.0;
+ float tmp;
+ float tmpEmin;
+ long CutLowSize = 0;
+ long CutHighSize = 0;
+ floatVector* Plog;
+ stepInfo sInfo[linfo->degree+1];
+ iterationInfo iInfo;
+
+ Plog = floatVectorInit(NULL,spacing->size);
+ iInfo.CutLine = 0.0;
+ iInfo.degree = linfo->degree;
+
+ for(i=0;i<=linfo->degree;i++){
+ sInfo[i].step = linfo->step;
+ sInfo[i].min = linfo->min;
+ sInfo[i].max = linfo->max;
+ }
+ __stepNumberCulc(sInfo,linfo->degree);
+
+ iInfo.CutLowSize = 0;
+ iInfo.CutHighSize =0;
+ iInfo.Emax = 0.0;
+
+ tmpcoefficient = floatVectorInit(NULL,linfo->degree);
+
+ for(i=0;i<spacing->size;i++){
+ Plog->data[i] = log10(scatter->data[i]);
+
+ if(Pmax < Plog->data[i]){
+ Pmax = Plog->data[i];
+ }
+
+ if(spacing->data[i] < ini->CutLow){
+ iInfo.CutLowSize = i+1;
+ }
+ if(spacing->data[i] < ini->CutHigh){
+ iInfo.CutHighSize = i;
+ }
+
+ if((spacing->data[i] > ini->CutLow) && (spacing->data[i] < ini->CutHigh)){
+ iInfo.Emax += Plog->data[i];
+ }
+ }
+ iInfo.Emin = iInfo.Emax;
+ tmpEmin = iInfo.Emin;
+
+
+/*below*/
+ if(0 == mode || -1 == mode){
+ fprintf(stdout,"below\n");
+ iInfo.degree = 0;
+ sInfo[0].step = 0.01;
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
+ belowCoefficient[0][0] = tmpcoefficient->data[0];
+ sInfo[0].step = linfo->step;
+ iInfo.CutLine = tmpcoefficient->data[0] -0.1;
+ fprintf(stdout,"%2ld: %10.3e \n",0,tmpcoefficient->data[0]);
+
+ if(linfo->degree > 0){
+ iInfo.degree = 1;
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
+ for(j=0 ; j<=iInfo.degree ; j++){
+ belowCoefficient[1][j] = tmpcoefficient->data[j];
+ fprintf(stdout,"%2ld: %10.3e ",j,tmpcoefficient->data[j]);
+ }
+ fprintf(stdout,"\n");
+ }
+ for(i=2 ; i<linfo->degree+1 ; i++){
+ iInfo.degree = i;
+ sInfo[i-1].step = sInfo[i-1].step * 100;
+ sInfo[i].step = sInfo[i].step * 100;
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
+
+ sInfo[i-2].min = tmpcoefficient->data[i-2];
+ sInfo[i-2].max = tmpcoefficient->data[i-2];
+ sInfo[i-1].step = sInfo[i-1].step/100;
+ sInfo[i].step = sInfo[i].step/100;
+
+ sInfo[i-1].min = tmpcoefficient->data[i-1] - 100*sInfo[i-1].step;
+ sInfo[i-1].max = tmpcoefficient->data[i-1] + 100*sInfo[i-1].step;
+ sInfo[i].min = tmpcoefficient->data[i] - 100*sInfo[i].step;
+ sInfo[i].max = tmpcoefficient->data[i] + 100*sInfo[i].step;
+
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
+ sInfo[i-1].min = linfo->min;
+ sInfo[i-1].max = linfo->max;
+ sInfo[i].min = linfo->min;
+ sInfo[i].max = linfo->max;
+ for(j=0 ; j<=i ; j++){
+ belowCoefficient[i][j] = tmpcoefficient->data[j];
+ fprintf(stdout,"%2ld: %10.3e ",j,tmpcoefficient->data[j]);
+ }
+ fprintf(stdout,"\n");
+ }
+ iInfo.CutLine = 0.0;
+ }
+/*below end*/
+/*above initial*/
+ if(0 == mode || 1 == mode){
+ for(i=0 ; i<=linfo->degree ; i++){
+ sInfo[i].step =linfo->step * 10;
+ sInfo[i].min = linfo->min * 10;
+ sInfo[i].max = linfo->max * 10;
+ }
+ tmpcoefficient = floatVectorInit(NULL,linfo->degree+1);
+ iInfo.Emin = tmpEmin;
+
+ /*subtract noise*/
+ /* for(i=iInfo.CutLowSize ; i<=iInfo.CutHighSize ; i++){
+ fprintf(stdout,"%10.3f %10.3f",spacing->data[i],Plog->data[i]);
+ for(j=0 ; j<=linfo->degree ; j++){
+ Plog->data[i] -= belowCoefficient[linfo->degree][j]*__power(spacing->data[i] ,j);
+ }
+ fprintf(stdout,"%10.3f\n",Plog->data[i]);
+ }
+ */
+ /*above start*/
+ /*above*/
+ fprintf(stdout,"above\n");
+ iInfo.degree = 0;
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,-1.0);
+ aboveCoefficient[0][0] = tmpcoefficient->data[0];
+ fprintf(stdout,"%2ld: %10.3e \n",0,tmpcoefficient->data[0]);
+
+ if(linfo->degree > 0){
+ iInfo.degree = 1;
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,-1.0);
+ aboveCoefficient[1][0] = tmpcoefficient->data[0];
+ aboveCoefficient[1][1] = tmpcoefficient->data[1];
+ for(i=0 ; i<iInfo.degree+1 ; i++){
+ fprintf(stdout,"%2ld: %10.3e ",i,tmpcoefficient->data[i]);
+ }
+ fprintf(stdout,"\n");
+ }
+
+ for(j= 2 ; j<=linfo->degree ; j++){
+ iInfo.degree = j;
+ sInfo[j].step = sInfo[j].step * 100;
+ sInfo[j-1].step = sInfo[j-1].step * 100;
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,-1.0);
+
+ sInfo[j-2].step = sInfo[j-2].step / 10;
+ sInfo[j-2].min = tmpcoefficient->data[j-2] - 1000*sInfo[j-2].step;
+ sInfo[j-2].max = tmpcoefficient->data[j-2] + 1000*sInfo[j-2].step;
+
+ sInfo[j-1].step = sInfo[j-1].step /10;
+ sInfo[j-1].min = tmpcoefficient->data[j-1] - 10*sInfo[j-1].step;
+ sInfo[j-1].max = tmpcoefficient->data[j-1] + 10*sInfo[j-1].step;
+
+ sInfo[j].step = sInfo[j].step /10;
+ sInfo[j].min = tmpcoefficient->data[j] - 10*sInfo[j].step;
+ sInfo[j].max = tmpcoefficient->data[j] + 10*sInfo[j].step;
+
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,-1.0);
+ sInfo[j-2].min = tmpcoefficient->data[j-2];
+ sInfo[j-2].max = tmpcoefficient->data[j-2];
+
+ sInfo[j-1].step = linfo->step;
+ sInfo[j-1].min = tmpcoefficient->data[j-1] - 100*sInfo[j-1].step;
+ sInfo[j-1].max = tmpcoefficient->data[j-1] + 100*sInfo[j-1].step;
+
+ sInfo[j].step = linfo->step;
+ sInfo[j].min = tmpcoefficient->data[j] - 100*sInfo[j].step;
+ sInfo[j].max = tmpcoefficient->data[j] + 100*sInfo[j].step;
+
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,-1.0);
+
+ sInfo[j-1].min = linfo->min;
+ sInfo[j-1].max = linfo->max;
+ sInfo[j-1].step = linfo->step;
+ sInfo[j].min = linfo->min;
+ sInfo[j].max = linfo->max;
+ sInfo[j].step = linfo->step;
+
+ for(i=0 ; i<=j ; i++){
+ aboveCoefficient[j][i] = tmpcoefficient->data[i];
+ fprintf(stdout,"%2ld: %10.3e ",i,tmpcoefficient->data[i]);
+ }
+ fprintf(stdout,"\n");
+ }
+ }
+/*above end*/
+/* for(i=0 ; i<=linfo->degree ; i++){
+ sInfo[i].step =linfo->step;
+ sInfo[i].min = linfo->min;
+ sInfo[i].max = linfo->max;
+ }
+ tmpcoefficient = floatVectorInit(NULL,linfo->degree+1);
+ iInfo.Emin = tmpEmin;
+*/
+/*below*/
+/* fprintf(stdout,"below\n");
+ iInfo.degree = 0;
+ sInfo[0].step = 0.01;
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
+ belowCoefficient[0][0] = tmpcoefficient->data[0];
+ sInfo[0].step = linfo->step;
+ iInfo.CutLine = tmpcoefficient->data[0] -0.1;
+ fprintf(stdout,"%2ld: %10.3e \n",0,tmpcoefficient->data[0]);
+
+ if(linfo->degree > 0){
+ iInfo.degree = 1;
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
+ for(j=0 ; j<=iInfo.degree ; j++){
+ belowCoefficient[1][j] = tmpcoefficient->data[j];
+ fprintf(stdout,"%2ld: %10.3e ",j,tmpcoefficient->data[j]);
+ }
+ fprintf(stdout,"\n");
+ }
+ for(i=2 ; i<linfo->degree+1 ; i++){
+ iInfo.degree = i;
+ sInfo[i-1].step = sInfo[i-1].step * 100;
+ sInfo[i].step = sInfo[i].step * 100;
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
+
+ sInfo[i-2].min = tmpcoefficient->data[i-2];
+ sInfo[i-2].max = tmpcoefficient->data[i-2];
+ sInfo[i-1].step = sInfo[i-1].step/100;
+ sInfo[i].step = sInfo[i].step/100;
+
+ sInfo[i-1].min = tmpcoefficient->data[i-1] - 100*sInfo[i-1].step;
+ sInfo[i-1].max = tmpcoefficient->data[i-1] + 100*sInfo[i-1].step;
+ sInfo[i].min = tmpcoefficient->data[i] - 100*sInfo[i].step;
+ sInfo[i].max = tmpcoefficient->data[i] + 100*sInfo[i].step;
+
+ __stepNumberCulc(sInfo,linfo->degree);
+ __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
+ sInfo[i-1].min = linfo->min;
+ sInfo[i-1].max = linfo->max;
+ sInfo[i].min = linfo->min;
+ sInfo[i].max = linfo->max;
+ for(j=0 ; j<=i ; j++){
+ belowCoefficient[i][j] = tmpcoefficient->data[j];
+ fprintf(stdout,"%2ld: %10.3e ",j,tmpcoefficient->data[j]);
+ }
+ fprintf(stdout,"\n");
+ }
+*/
+/*
+ fprintf(stdout,"degree : ");
+ for(i=0 ; i<=linfo->degree ; i++){
+ fprintf(stdout,"%8ld",i);
+ }
+ fprintf(stdout,"\n");
+
+ fprintf(stdout,"above\n");
+ for(i=0 ; i<=linfo->degree ; i++){
+ fprintf(stdout,"%6ld ",i);
+ for(j=0 ; j<=i ; j++){
+ fprintf(stdout,"%+7.3f ",aboveCoefficient[i][j]);
+ }
+ fprintf(stdout,"\n");
+ }
+
+ fprintf(stdout,"below\n");
+ for(i=0 ; i<=linfo->degree ; i++){
+ fprintf(stdout,"%6ld ",i);
+ for(j=0 ; j<=i ; j++){
+ fprintf(stdout,"%+7.3f ",belowCoefficient[i][j]);
+ }
+ fprintf(stdout,"\n");
+ }
+ fprintf(stdout,"\n");
+*/
+}
#include <math.h>
#include "./powerspectraTangentLine.h"
#include "./ctfInfoWrite2.h"
-#define DEBUG
+#undef DEBUG
+#define DEBUG2
#include "genUtil.h"
#include "Vector.h"
#include "nr2.h"
}
}
-/*mode = 1 belowLine
- = -1 aboveLine*/
+/*
+mode = 1 belowLine
+ = -1 aboveLine
+*/
void
__CoefficientDetermine(floatVector* spacing ,floatVector* Plog ,floatVector* tmpcoefficient ,stepInfo* sInfo,iterationInfo* iInfo, float mode)
{
float E;
float minTangent;
floatVector* Tangent;
-
-/* if(mode == 1.0){
- fprintf(stderr,"BelowLineEstimation ");
- }
- else if(mode == -1.0){
- fprintf(stderr,"AboveLineEstimation ");
- }
- else{
- fprintf(stderr,"CoefficientDetermine don't support this mode\nprogram stop");
+
+#ifdef DEBUG
+ if(mode == 1.0){
+ DEBUGPRINT("BelowLineEstimation ");
+ } else if(mode == -1.0){
+ DEBUGPRINT("AboveLineEstimation ");
+ } else{
+ DEBUGPRINT("CoefficientDetermine don't support this mode\nprogram stop");
exit(1);
}
-
- fprintf(stderr,"degree:%2ld\n",iInfo->degree);
-*/
+ DEBUGPRINT1("degree:%2ld\n",iInfo->degree);
+#endif
Tangent = floatVectorInit(NULL,spacing->size);
- iInfo-> Emax;
+ //iInfo->Emax;
for(j=0 ; j<=iInfo->degree ; j++){
sum *= sInfo[j].Number;
- //fprintf(stderr,"StepCondition[%2ld] Min: %+8.3lf Max: %+8.3lf StepSize: %6.3f StepNumber: %4ld\n",j,sInfo[j].min,sInfo[j].max,sInfo[j].step,sInfo[j].Number);
+ DEBUGPRINT5("StepCondition[%2ld] Min: %+8.3lf Max: %+8.3lf StepSize: %6.3f StepNumber: %4ld\n",j,sInfo[j].min,sInfo[j].max,sInfo[j].step,sInfo[j].Number);
}
- //fprintf(stderr,"sum:%llu\n",sum);
+ DEBUGPRINT1("sum:%llu\n",sum);
for(n=0 ; n< sum; n++){
E = 0.0;
minTangent = 0.0;
- for(j=0 ; j<=iInfo->degree ; j++){
+ for(j=0 ; j<=iInfo->degree; j++){
fewerN = 1;
for(k=0 ; k<j ; k++){
fewerN *= sInfo[k].Number;
if(E <= iInfo->Emin){
for(j=0 ; j<=iInfo->degree ; j++){
tmpcoefficient->data[j] = coefficient[j];
- //fprintf(stdout,"%2ld:%+10.3e ",j,tmpcoefficient->data[j]);
+ DEBUGPRINT2("%2ld:%+10.3e ",j,tmpcoefficient->data[j]);
}
- //fprintf(stdout,"E=%10.3e Emin=%10.3e \n",E,iInfo->Emin);
+ DEBUGPRINT2("E=%10.3e Emin=%10.3e \n",E,iInfo->Emin);
iInfo->Emin = E;
}
}
-/*
- fprintf(stderr,"result: ");
+ DEBUGPRINT("result: ");
+#ifdef DEBUG
for(j=0 ; j<=iInfo->degree ; j++){
- fprintf(stderr,"%2ld: %+10.3e ",j,tmpcoefficient->data[j]);
+ DEBUGPRINT2("%2ld: %+10.3e ",j,tmpcoefficient->data[j]);
}
- fprintf(stderr,"Emin= %10.3e\n",iInfo->Emin);
-*/
+#endif
+ DEBUGPRINT1("Emin= %10.3e\n",iInfo->Emin);
}
/*mode 0 above & below
-1 below
1 above*/
void
-TangentLine(floatVector* spacing, floatVector* scatter,float** belowCoefficient,float** aboveCoefficient ,ctfInfo* ini,lctfDetermineInfo* linfo,int mode)
+TangentLine(floatVector* spacing, floatVector* scatter, float** belowCoefficient, float** aboveCoefficient, ctfInfo* ini, lctfDetermineInfo* linfo, int mode)
{
long i,j;
floatVector* tmpcoefficient;
/*below*/
if(0 == mode || -1 == mode){
- fprintf(stdout,"below\n");
+ DEBUGPRINT("below\n");
iInfo.degree = 0;
sInfo[0].step = 0.01;
__stepNumberCulc(sInfo,linfo->degree);
belowCoefficient[0][0] = tmpcoefficient->data[0];
sInfo[0].step = linfo->step;
iInfo.CutLine = tmpcoefficient->data[0] -0.1;
- fprintf(stdout,"%2ld: %10.3e \n",0,tmpcoefficient->data[0]);
+ DEBUGPRINT2("%2d: %10.3e \n", 0, tmpcoefficient->data[0]);
if(linfo->degree > 0){
iInfo.degree = 1;
__CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
for(j=0 ; j<=iInfo.degree ; j++){
belowCoefficient[1][j] = tmpcoefficient->data[j];
- fprintf(stdout,"%2ld: %10.3e ",j,tmpcoefficient->data[j]);
+ DEBUGPRINT2("%2ld: %10.3e ",j,tmpcoefficient->data[j]);
}
- fprintf(stdout,"\n");
+ DEBUGPRINT("\n");
}
for(i=2 ; i<linfo->degree+1 ; i++){
iInfo.degree = i;
sInfo[i].max = linfo->max;
for(j=0 ; j<=i ; j++){
belowCoefficient[i][j] = tmpcoefficient->data[j];
- fprintf(stdout,"%2ld: %10.3e ",j,tmpcoefficient->data[j]);
+ DEBUGPRINT2("%2d: %10.3e ", j, tmpcoefficient->data[j]);
}
- fprintf(stdout,"\n");
+ DEBUGPRINT("\n");
}
iInfo.CutLine = 0.0;
}
__stepNumberCulc(sInfo,linfo->degree);
__CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,-1.0);
aboveCoefficient[0][0] = tmpcoefficient->data[0];
- fprintf(stdout,"%2ld: %10.3e \n",0,tmpcoefficient->data[0]);
+ DEBUGPRINT2("%2d: %10.3e \n", 0, tmpcoefficient->data[0]);
if(linfo->degree > 0){
iInfo.degree = 1;
for(i=0 ; i<=j ; i++){
aboveCoefficient[j][i] = tmpcoefficient->data[i];
- fprintf(stdout,"%2ld: %10.3e ",i,tmpcoefficient->data[i]);
+ DEBUGPRINT2("%2ld: %10.3e ",i,tmpcoefficient->data[i]);
}
- fprintf(stdout,"\n");
+ DEBUGPRINT("\n");
}
}
/*above end*/
-/* for(i=0 ; i<=linfo->degree ; i++){
- sInfo[i].step =linfo->step;
- sInfo[i].min = linfo->min;
- sInfo[i].max = linfo->max;
- }
- tmpcoefficient = floatVectorInit(NULL,linfo->degree+1);
- iInfo.Emin = tmpEmin;
-*/
-/*below*/
-/* fprintf(stdout,"below\n");
- iInfo.degree = 0;
- sInfo[0].step = 0.01;
- __stepNumberCulc(sInfo,linfo->degree);
- __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
- belowCoefficient[0][0] = tmpcoefficient->data[0];
- sInfo[0].step = linfo->step;
- iInfo.CutLine = tmpcoefficient->data[0] -0.1;
- fprintf(stdout,"%2ld: %10.3e \n",0,tmpcoefficient->data[0]);
-
- if(linfo->degree > 0){
- iInfo.degree = 1;
- __stepNumberCulc(sInfo,linfo->degree);
- __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
- for(j=0 ; j<=iInfo.degree ; j++){
- belowCoefficient[1][j] = tmpcoefficient->data[j];
- fprintf(stdout,"%2ld: %10.3e ",j,tmpcoefficient->data[j]);
- }
- fprintf(stdout,"\n");
- }
- for(i=2 ; i<linfo->degree+1 ; i++){
- iInfo.degree = i;
- sInfo[i-1].step = sInfo[i-1].step * 100;
- sInfo[i].step = sInfo[i].step * 100;
- __stepNumberCulc(sInfo,linfo->degree);
- __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
-
- sInfo[i-2].min = tmpcoefficient->data[i-2];
- sInfo[i-2].max = tmpcoefficient->data[i-2];
- sInfo[i-1].step = sInfo[i-1].step/100;
- sInfo[i].step = sInfo[i].step/100;
+#ifdef DEBUG2
+ TangentLinePrint(stderr, spacing, scatter, belowCoefficient, aboveCoefficient, linfo, mode);
+#endif
+}
- sInfo[i-1].min = tmpcoefficient->data[i-1] - 100*sInfo[i-1].step;
- sInfo[i-1].max = tmpcoefficient->data[i-1] + 100*sInfo[i-1].step;
- sInfo[i].min = tmpcoefficient->data[i] - 100*sInfo[i].step;
- sInfo[i].max = tmpcoefficient->data[i] + 100*sInfo[i].step;
-
- __stepNumberCulc(sInfo,linfo->degree);
- __CoefficientDetermine(spacing,Plog,tmpcoefficient,sInfo,&iInfo,1.0);
- sInfo[i-1].min = linfo->min;
- sInfo[i-1].max = linfo->max;
- sInfo[i].min = linfo->min;
- sInfo[i].max = linfo->max;
- for(j=0 ; j<=i ; j++){
- belowCoefficient[i][j] = tmpcoefficient->data[j];
- fprintf(stdout,"%2ld: %10.3e ",j,tmpcoefficient->data[j]);
- }
- fprintf(stdout,"\n");
- }
-*/
-/*
- fprintf(stdout,"degree : ");
+void
+TangentLinePrint(FILE* fpt, floatVector* spacing, floatVector* scatter, float** belowCoefficient, float** aboveCoefficient, lctfDetermineInfo* linfo, int mode)
+{
+ int i, j;
+
+ fprintf(fpt,"degree : ");
for(i=0 ; i<=linfo->degree ; i++){
- fprintf(stdout,"%8ld",i);
+ fprintf(fpt,"%8d",i);
}
- fprintf(stdout,"\n");
+ fprintf(fpt,"\n");
- fprintf(stdout,"above\n");
+ fprintf(fpt,"above\n");
for(i=0 ; i<=linfo->degree ; i++){
- fprintf(stdout,"%6ld ",i);
+ fprintf(fpt,"%6d ",i);
for(j=0 ; j<=i ; j++){
- fprintf(stdout,"%+7.3f ",aboveCoefficient[i][j]);
+ fprintf(fpt,"%+7.3f ",aboveCoefficient[i][j]);
}
- fprintf(stdout,"\n");
+ fprintf(fpt,"\n");
}
- fprintf(stdout,"below\n");
+ fprintf(fpt,"below\n");
for(i=0 ; i<=linfo->degree ; i++){
- fprintf(stdout,"%6ld ",i);
+ fprintf(fpt,"%6d ",i);
for(j=0 ; j<=i ; j++){
- fprintf(stdout,"%+7.3f ",belowCoefficient[i][j]);
+ fprintf(fpt,"%+7.3f ",belowCoefficient[i][j]);
}
- fprintf(stdout,"\n");
+ fprintf(fpt,"\n");
}
- fprintf(stdout,"\n");
-*/
+ fprintf(fpt,"\n");
}
ctfInfo* ini,
lctfDetermineInfo* linfo,
int mode);
+extern void TangentLinePrint(FILE* fpt, floatVector* spacing,
+ floatVector* scatter,
+ float** belowCoefficient,
+ float** aboveCoefficient,
+ lctfDetermineInfo* linfo,
+ int mode);
/*prototype end*/
+++ /dev/null
-../lctfDetermination.c:96: warning: `/*' within comment
-../lctfDetermination.c:97: parse error before `:'
-../lctfDetermination.c:114: warning: type defaults to `int' in declaration of `R'
-../lctfDetermination.c:114: `x' undeclared here (not in a function)
-../lctfDetermination.c:114: warning: data definition has no type or storage class
-../lctfDetermination.c:115: warning: type defaults to `int' in declaration of `I0'
-../lctfDetermination.c:115: `p' undeclared here (not in a function)
-../lctfDetermination.c:115: warning: data definition has no type or storage class
-../lctfDetermination.c:116: warning: type defaults to `int' in declaration of `dF'
-../lctfDetermination.c:116: `p' undeclared here (not in a function)
-../lctfDetermination.c:116: warning: data definition has no type or storage class
-../lctfDetermination.c:117: warning: type defaults to `int' in declaration of `Cs'
-../lctfDetermination.c:117: `p' undeclared here (not in a function)
-../lctfDetermination.c:117: warning: data definition has no type or storage class
-../lctfDetermination.c:118: warning: type defaults to `int' in declaration of `a'
-../lctfDetermination.c:118: `p' undeclared here (not in a function)
-../lctfDetermination.c:118: warning: data definition has no type or storage class
-../lctfDetermination.c:119: warning: type defaults to `int' in declaration of `Ai'
-../lctfDetermination.c:119: `p' undeclared here (not in a function)
-../lctfDetermination.c:119: warning: data definition has no type or storage class
-../lctfDetermination.c:120: warning: type defaults to `int' in declaration of `Cc'
-../lctfDetermination.c:120: `p' undeclared here (not in a function)
-../lctfDetermination.c:120: warning: data definition has no type or storage class
-../lctfDetermination.c:121: warning: type defaults to `int' in declaration of `dE'
-../lctfDetermination.c:121: `p' undeclared here (not in a function)
-../lctfDetermination.c:121: warning: data definition has no type or storage class
-../lctfDetermination.c:122: warning: type defaults to `int' in declaration of `V'
-../lctfDetermination.c:122: `p' undeclared here (not in a function)
-../lctfDetermination.c:122: warning: data definition has no type or storage class
-../lctfDetermination.c:123: warning: type defaults to `int' in declaration of `White'
-../lctfDetermination.c:123: `p' undeclared here (not in a function)
-../lctfDetermination.c:123: warning: data definition has no type or storage class
-../lctfDetermination.c:124: warning: type defaults to `int' in declaration of `White2'
-../lctfDetermination.c:124: `p' undeclared here (not in a function)
-../lctfDetermination.c:124: warning: data definition has no type or storage class
-../lctfDetermination.c:125: warning: type defaults to `int' in declaration of `B'
-../lctfDetermination.c:125: `p' undeclared here (not in a function)
-../lctfDetermination.c:125: warning: data definition has no type or storage class
-../lctfDetermination.c:127: warning: type defaults to `int' in declaration of `E'
-../lctfDetermination.c:127: `p' undeclared here (not in a function)
-../lctfDetermination.c:127: warning: data definition has no type or storage class
-../lctfDetermination.c:128: warning: type defaults to `int' in declaration of `E0'
-../lctfDetermination.c:128: `p' undeclared here (not in a function)
-../lctfDetermination.c:128: warning: data definition has no type or storage class
-../lctfDetermination.c:129: warning: type defaults to `int' in declaration of `lambda'
-../lctfDetermination.c:129: `p' undeclared here (not in a function)
-../lctfDetermination.c:129: warning: data definition has no type or storage class
-../lctfDetermination.c:130: warning: type defaults to `int' in declaration of `Me'
-../lctfDetermination.c:130: `p' undeclared here (not in a function)
-../lctfDetermination.c:130: warning: data definition has no type or storage class
-../lctfDetermination.c:133: warning: type defaults to `int' in declaration of `chi'
-../lctfDetermination.c:133: initializer element is not constant
-../lctfDetermination.c:133: warning: data definition has no type or storage class
-../lctfDetermination.c:134: warning: type defaults to `int' in declaration of `dchi'
-../lctfDetermination.c:134: initializer element is not constant
-../lctfDetermination.c:134: warning: data definition has no type or storage class
-../lctfDetermination.c:135: warning: type defaults to `int' in declaration of `spread'
-../lctfDetermination.c:135: conflicting types for `spread'
-../lctfDetermination.c:108: previous declaration of `spread'
-../lctfDetermination.c:135: initializer element is not constant
-../lctfDetermination.c:135: warning: data definition has no type or storage class
-../lctfDetermination.c:136: warning: type defaults to `int' in declaration of `CTF'
-../lctfDetermination.c:136: conflicting types for `CTF'
-../lctfDetermination.c:108: previous declaration of `CTF'
-../lctfDetermination.c:136: initializer element is not constant
-../lctfDetermination.c:136: warning: data definition has no type or storage class
-../lctfDetermination.c:137: warning: type defaults to `int' in declaration of `Env1'
-../lctfDetermination.c:137: conflicting types for `Env1'
-../lctfDetermination.c:108: previous declaration of `Env1'
-../lctfDetermination.c:137: `Ain' undeclared here (not in a function)
-../lctfDetermination.c:137: `Ain' undeclared here (not in a function)
-../lctfDetermination.c:137: initializer element is not constant
-../lctfDetermination.c:137: warning: data definition has no type or storage class
-../lctfDetermination.c:138: warning: type defaults to `int' in declaration of `Env2'
-../lctfDetermination.c:138: conflicting types for `Env2'
-../lctfDetermination.c:108: previous declaration of `Env2'
-../lctfDetermination.c:138: initializer element is not constant
-../lctfDetermination.c:138: warning: data definition has no type or storage class
-../lctfDetermination.c:139: warning: type defaults to `int' in declaration of `Env'
-../lctfDetermination.c:139: conflicting types for `Env'
-../lctfDetermination.c:108: previous declaration of `Env'
-../lctfDetermination.c:139: initializer element is not constant
-../lctfDetermination.c:139: warning: data definition has no type or storage class
-../lctfDetermination.c:140: warning: type defaults to `int' in declaration of `Vib'
-../lctfDetermination.c:140: conflicting types for `Vib'
-../lctfDetermination.c:108: previous declaration of `Vib'
-../lctfDetermination.c:140: initializer element is not constant
-../lctfDetermination.c:140: warning: data definition has no type or storage class
-../lctfDetermination.c:141: warning: type defaults to `int' in declaration of `MTF'
-../lctfDetermination.c:141: conflicting types for `MTF'
-../lctfDetermination.c:108: previous declaration of `MTF'
-../lctfDetermination.c:141: initializer element is not constant
-../lctfDetermination.c:141: warning: data definition has no type or storage class
-../lctfDetermination.c:143: warning: type defaults to `int' in declaration of `S'
-../lctfDetermination.c:143: conflicting types for `S'
-../lctfDetermination.c:109: previous declaration of `S'
-../lctfDetermination.c:143: initializer element is not constant
-../lctfDetermination.c:143: warning: data definition has no type or storage class
-../lctfDetermination.c:144: warning: type defaults to `int' in declaration of `N'
-../lctfDetermination.c:144: conflicting types for `N'
-../lctfDetermination.c:110: previous declaration of `N'
-../lctfDetermination.c:144: initializer element is not constant
-../lctfDetermination.c:144: warning: data definition has no type or storage class
-../lctfDetermination.c:145: warning: type defaults to `int' in declaration of `N2'
-../lctfDetermination.c:145: conflicting types for `N2'
-../lctfDetermination.c:111: previous declaration of `N2'
-../lctfDetermination.c:145: initializer element is not constant
-../lctfDetermination.c:145: warning: data definition has no type or storage class
-../lctfDetermination.c:147: warning: type defaults to `int' in declaration of `F'
-../lctfDetermination.c:147: conflicting types for `F'
-../lctfDetermination.c:112: previous declaration of `F'
-../lctfDetermination.c:147: initializer element is not constant
-../lctfDetermination.c:147: warning: data definition has no type or storage class
-../lctfDetermination.c:148: warning: type defaults to `int' in declaration of `y'
-../lctfDetermination.c:148: warning: initialization makes pointer from integer without a cast
-../lctfDetermination.c:148: initializer element is not constant
-../lctfDetermination.c:148: warning: data definition has no type or storage class
-../lctfDetermination.c:151: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:151: called object is not a function
-../lctfDetermination.c:151: array initialized from non-constant array expression
-../lctfDetermination.c:151: warning: data definition has no type or storage class
-../lctfDetermination.c:152: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:152: conflicting types for `dyda'
-../lctfDetermination.c:151: previous declaration of `dyda'
-../lctfDetermination.c:153: `Ain' undeclared here (not in a function)
-../lctfDetermination.c:153: `Ain' undeclared here (not in a function)
-../lctfDetermination.c:153: array initialized from non-constant array expression
-../lctfDetermination.c:153: warning: data definition has no type or storage class
-../lctfDetermination.c:154: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:154: conflicting types for `dyda'
-../lctfDetermination.c:152: previous declaration of `dyda'
-../lctfDetermination.c:154: called object is not a function
-../lctfDetermination.c:155: `Ain' undeclared here (not in a function)
-../lctfDetermination.c:155: `Ain' undeclared here (not in a function)
-../lctfDetermination.c:155: array initialized from non-constant array expression
-../lctfDetermination.c:155: warning: data definition has no type or storage class
-../lctfDetermination.c:156: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:156: conflicting types for `dyda'
-../lctfDetermination.c:154: previous declaration of `dyda'
-../lctfDetermination.c:156: `Kai' undeclared here (not in a function)
-../lctfDetermination.c:156: invalid initializer
-../lctfDetermination.c:156: warning: data definition has no type or storage class
-../lctfDetermination.c:157: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:157: conflicting types for `dyda'
-../lctfDetermination.c:156: previous declaration of `dyda'
-../lctfDetermination.c:157: `Ain' undeclared here (not in a function)
-../lctfDetermination.c:157: array initialized from non-constant array expression
-../lctfDetermination.c:157: warning: data definition has no type or storage class
-../lctfDetermination.c:158: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:158: conflicting types for `dyda'
-../lctfDetermination.c:157: previous declaration of `dyda'
-../lctfDetermination.c:158: invalid initializer
-../lctfDetermination.c:158: warning: data definition has no type or storage class
-../lctfDetermination.c:159: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:159: conflicting types for `dyda'
-../lctfDetermination.c:158: previous declaration of `dyda'
-../lctfDetermination.c:159: invalid initializer
-../lctfDetermination.c:159: warning: data definition has no type or storage class
-../lctfDetermination.c:160: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:160: conflicting types for `dyda'
-../lctfDetermination.c:159: previous declaration of `dyda'
-../lctfDetermination.c:160: invalid initializer
-../lctfDetermination.c:160: warning: data definition has no type or storage class
-../lctfDetermination.c:161: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:161: conflicting types for `dyda'
-../lctfDetermination.c:160: previous declaration of `dyda'
-../lctfDetermination.c:161: invalid initializer
-../lctfDetermination.c:161: warning: data definition has no type or storage class
-../lctfDetermination.c:162: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:162: conflicting types for `dyda'
-../lctfDetermination.c:161: previous declaration of `dyda'
-../lctfDetermination.c:162: invalid initializer
-../lctfDetermination.c:162: warning: data definition has no type or storage class
-../lctfDetermination.c:163: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:163: conflicting types for `dyda'
-../lctfDetermination.c:162: previous declaration of `dyda'
-../lctfDetermination.c:163: invalid initializer
-../lctfDetermination.c:163: warning: data definition has no type or storage class
-../lctfDetermination.c:165: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:165: conflicting types for `dyda'
-../lctfDetermination.c:163: previous declaration of `dyda'
-../lctfDetermination.c:165: invalid initializer
-../lctfDetermination.c:165: warning: data definition has no type or storage class
-../lctfDetermination.c:166: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:166: conflicting types for `dyda'
-../lctfDetermination.c:165: previous declaration of `dyda'
-../lctfDetermination.c:166: invalid initializer
-../lctfDetermination.c:166: warning: data definition has no type or storage class
-../lctfDetermination.c:167: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:167: conflicting types for `dyda'
-../lctfDetermination.c:166: previous declaration of `dyda'
-../lctfDetermination.c:167: invalid initializer
-../lctfDetermination.c:167: warning: data definition has no type or storage class
-../lctfDetermination.c:168: warning: type defaults to `int' in declaration of `dyda'
-../lctfDetermination.c:168: conflicting types for `dyda'
-../lctfDetermination.c:167: previous declaration of `dyda'
-../lctfDetermination.c:168: parse error before `;'
-../lctfDetermination.c:168: warning: data definition has no type or storage class
-../lctfDetermination.c: In function `lctfDeterminationbyFittingMethods':
-../lctfDetermination.c:180: warning: unused variable `maxE'
-../lctfDetermination.c:180: warning: unused variable `E'
-../lctfDetermination.c:179: warning: unused variable `flag'
-../lctfDetermination.c: At top level:
-../lctfDetermination.c:12: warning: `__sccs_id' defined but not used
-/home/people/tkys/Eos/include/nr2.h:3: warning: `maxarg1' defined but not used
-/home/people/tkys/Eos/include/nr2.h:4: warning: `maxarg2' defined but not used
-make[1]: [lctfDetermination.o] Error 1 (ignored)
FILE* fptLogIn;
int previousFileNumber;
+ int flagLogBinary;
+ FILE* fptLogBinary; /* Binary Log */
+
int flagLog;
FILE* fptLog; /* All Log */
lmrcImageMorphologyStructuringElement3DSphere(&linfo->SE, linfo->radius, linfo->n, mode);
break;
}
+ case 6: {
+ lmrcImageMorphologyStructuringElement2DRectangle(&linfo->SE, linfo->nx, linfo->ny, mode);
+ break;
+ }
+ case 7: {
+ lmrcImageMorphologyStructuringElement3DCuboid(&linfo->SE, linfo->nx, linfo->ny, linfo->nz, mode);
+ break;
+ }
+ case 8: {
+ lmrcImageMorphologyStructuringElement3DCylinder(&linfo->SE, linfo->radius, linfo->nx, linfo->ny, linfo->nz, mode);
+ break;
+ }
default: {
fprintf(stderr, "Not supported mode in lmrcImageMorphologyStructuringElementSet: %d", linfo->mode);
exit(EXIT_FAILURE);
fprintf(fpt, "3: 3D Cross3x3x3: 6-neighbour\n");
fprintf(fpt, "4: 3D Cubic3x3x3: 26-neighbour\n");
fprintf(fpt, "5: 3D Sphere, need (radius, n(cubic size))\n");
+ fprintf(fpt, "6: 2D Rectangle, need nx, ny\n");
+ fprintf(fpt, "7: 3D Cuboid, need nx, ny, nz\n");
+ fprintf(fpt, "8: 3D Cylindar, need r, nx, ny, nz\n");
fprintf(fpt, "-----\n");
fprintf(fpt, "Dilation: Max for image : Or for binary image \n");
void
-lmrcImageMorphologyStructuringElementSphere(mrcImage* out, int r, int n, int mode)
+lmrcImageMorphologyStructuringElementSphere(mrcImage* out, int r, int nx, int ny, int nz, int mode)
{
int x, y, z;
int rx, ry, rz;
double data;
mrcDefaultHeaderValueSet(out);
- out->HeaderN.x = n;
- out->HeaderN.y = n;
- out->HeaderN.z = 1;
- out->HeaderStartN.x = -n/2;
- out->HeaderStartN.y = -n/2;
- out->HeaderStartN.z = 0;
+ out->HeaderN.x = nx;
+ out->HeaderN.y = ny;
+ out->HeaderN.z = nz;
+ out->HeaderStartN.x = -nx/2;
+ out->HeaderStartN.y = -ny/2;
+ out->HeaderStartN.z = -nz/2;
out->HeaderMode = mrcCharImage;
mrcInit(out, NULL);
}
void
+lmrcImageMorphologyStructuringElement3DCylinder(mrcImage* out, int r, int nx, int ny, int nz, int mode)
+{
+ int x, y, z;
+ int rx, ry, rz;
+ double rr, r2;
+ double data;
+
+ mrcDefaultHeaderValueSet(out);
+ out->HeaderN.x = nx;
+ out->HeaderN.y = ny;
+ out->HeaderN.z = nz;
+ out->HeaderStartN.x = -nx/2;
+ out->HeaderStartN.y = -ny/2;
+ out->HeaderStartN.z = -nz/2;
+ out->HeaderMode = mrcCharImage;
+ mrcInit(out, NULL);
+
+ r2 = r*r;
+ for(z=0; z<out->HeaderN.z; z++) {
+ rz = z + out->HeaderStartN.z;
+ for(y=0; y<out->HeaderN.y; y++) {
+ ry = y + out->HeaderStartN.y;
+ for(x=0; x<out->HeaderN.x; x++) {
+ rx = x + out->HeaderStartN.x;
+ rr = rx*rx + ry*ry;
+ if(rr <= r2) {
+ mrcPixelDataSet(out, x, y, z, 1, mrcPixelRePart);
+ } else {
+ mrcPixelDataSet(out, x, y, z, 0, mrcPixelRePart);
+ }
+ }
+ }
+ }
+}
+
+void
lmrcImageMorphologyStructuringElement2DDisk(mrcImage* out, int r, int n, int mode)
{
- lmrcImageMorphologyStructuringElementSphere(out, r, n, mode);
+ lmrcImageMorphologyStructuringElementSphere(out, r, n, n, 1, mode);
}
void
mrcDefaultHeaderValueSet(out);
out->HeaderN.x = 3;
out->HeaderN.y = 3;
- out->HeaderN.z = 1;
+ out->HeaderN.z = 3;
out->HeaderStartN.x = -1;
out->HeaderStartN.y = -1;
out->HeaderStartN.z = 0;
mrcDefaultHeaderValueSet(out);
out->HeaderN.x = 3;
out->HeaderN.y = 3;
- out->HeaderN.z = 1;
+ out->HeaderN.z = 3;
out->HeaderStartN.x = -1;
out->HeaderStartN.y = -1;
out->HeaderStartN.z = 0;
}
}
+void
+lmrcImageMorphologyStructuringElement3DCuboid(mrcImage* out, int nx, int ny, int nz, int mode)
+{
+ float x, y, z;
+
+ mrcDefaultHeaderValueSet(out);
+ out->HeaderN.x = nx;
+ out->HeaderN.y = ny;
+ out->HeaderN.z = nz;
+ out->HeaderStartN.x = -nx/2;
+ out->HeaderStartN.y = -ny/2;
+ out->HeaderStartN.z = -nz/2;
+ out->HeaderMode = mrcCharImage;
+ mrcInit(out, NULL);
+ for(z=0; z<nz; z++) {
+ for(y=0; y<ny; y++) {
+ for(x=0; x<nx; x++) {
+ mrcPixelDataSet(out, x, y, z, 1, mrcPixelRePart);
+ }
+ }
+ }
+}
+
+void
+lmrcImageMorphologyStructuringElement2DRectangle(mrcImage* out, int nx, int ny, int mode)
+{
+ float x, y, z;
+
+ mrcDefaultHeaderValueSet(out);
+ out->HeaderN.x = nx;
+ out->HeaderN.y = ny;
+ out->HeaderN.z = 1;
+ out->HeaderStartN.x = -1;
+ out->HeaderStartN.y = -1;
+ out->HeaderStartN.z = 0;
+ out->HeaderMode = mrcCharImage;
+ mrcInit(out, NULL);
+ for(y=0; y<ny; y++) {
+ for(x=0; x<nx; x++) {
+ mrcPixelDataSet(out, x, y, z, 1, mrcPixelRePart);
+ }
+ }
+}
+
void
lmrcImageMorphologyStructuringElement3DSphere(mrcImage* out, int r, int n, int mode)
{
- lmrcImageMorphologyStructuringElementSphere(out, r, n, mode);
+ lmrcImageMorphologyStructuringElementSphere(out, r, n, n, n, mode);
}
int nx;
int ny;
int nz;
- int radius; /* for Disk*/
+ int radius; /* for Disk/Sphere/Cylinder*/
/* SE feature */
int mode;
void lmrcImageMorphologyStructuringElement3DCross(mrcImage* out, int mode);
void lmrcImageMorphologyStructuringElement3DCubic(mrcImage* out, int mode);
void lmrcImageMorphologyStructuringElement3DSphere(mrcImage* out, int r, int n, int mode);
-void lmrcImageMorphologyStructuringElementSphere(mrcImage* out, int r, int n, int mode);
+void lmrcImageMorphologyStructuringElementSphere(mrcImage* out, int r, int nx, int ny, int nz, int mode);
+void lmrcImageMorphologyStructuringElement2DRectangle(mrcImage* out, int nx, int ny, int mode);
+void lmrcImageMorphologyStructuringElement3DCuboid(mrcImage* out, int nx, int ny, int nz, int mode);
+void lmrcImageMorphologyStructuringElement3DCylinder(mrcImage* out, int r, int nx, int ny, int nz, int mode);
/* lmrcImageErosion.c */
void lmrcImageErosion(mrcImage* dst, mrcImage* src, lmrcImageMorphologyInfo linfo, int mode);
extern clusterLogOneRecord* clusterLogWriteAllBinary(clusterLog* cluster, char* basename, int mode);
extern clusterLogOneRecord* clusterLogWrite(clusterLog* cluster, FILE* fpt, int mode);
+extern clusterLogOneRecord* clusterLogWriteBinary2(clusterLog* cluster, FILE* fpt, int mode);
extern clusterLogOneRecord* clusterLogWriteOneRecord(clusterLogOneRecord* cluster, FILE* fpt, int mode);
+extern clusterLogOneRecord* clusterLogWriteOneRecordBinary2(clusterLogOneRecord* cluster, FILE* fpt, int mode);
extern clusterLogOneRecord* clusterLogWriteAll(clusterLog* cluster, FILE* fpt, int mode);
+extern clusterLogOneRecord* clusterLogWriteAllBinary2(clusterLog* cluster, FILE* fpt, int mode);
extern clusterLogOneRecord* clusterLogWriteClusterOnly(clusterLog* cluster, FILE* fpt, int mode);
extern void clusterLogWritePS(clusterLog* cluster, clusterTreeInfo* linfo, FILE* fpt, int mode);
}
clusterLogOneRecord*
+clusterLogWriteBinary2(clusterLog* in, FILE* fpt, int mode)
+{
+ char s[1024];
+ char* stmp;
+ clusterLogOneRecord * cluster;
+
+ cluster = in->current;
+ return clusterLogWriteOneRecord(cluster, fpt, mode);
+}
+
+clusterLogOneRecord*
clusterLogWriteOneRecord(clusterLogOneRecord* cluster, FILE* fpt, int mode)
{
if(NULL!=cluster) {
}
clusterLogOneRecord*
+clusterLogWriteOneRecordBinary2(clusterLogOneRecord* cluster, FILE* fpt, int mode)
+{
+ clusterTypeInteger N, M;
+
+ if(NULL!=cluster) {
+ switch(mode) {
+ case 0: {
+ fwrite(&cluster->N, sizeof(cluster->N), 1, fpt);
+ fwrite(&cluster->M, sizeof(cluster->M), 1, fpt);
+ fwrite(&cluster->prevN, sizeof(cluster->prevN), 1, fpt);
+ fwrite(&cluster->prevM, sizeof(cluster->prevM), 1, fpt);
+ fwrite(&cluster->distance, sizeof(cluster->distance), 1, fpt);
+ break;
+ }
+ case 1: {
+ if(NULL!=cluster->belowLayer) {
+
+ fwrite(&cluster->N, sizeof(cluster->N), 1, fpt);
+ fwrite(&cluster->M, sizeof(cluster->M), 1, fpt);
+ fwrite(&cluster->distance, sizeof(cluster->distance), 1, fpt);
+ fwrite(&cluster->clusterNumber, sizeof(cluster->clusterNumber), 1, fpt);
+ fwrite(&cluster->prevN, sizeof(cluster->prevN), 1, fpt);
+ fwrite(&cluster->prevM, sizeof(cluster->prevM), 1, fpt);
+ fwrite(&cluster->belowLayer->N, sizeof(cluster->belowLayer->N), 1, fpt);
+ fwrite(&cluster->belowLayer->M, sizeof(cluster->belowLayer->M), 1, fpt);
+ } else {
+ clusterLogWriteOneRecordBinary2(cluster, fpt, 0);
+ }
+ break;
+ }
+ case 2: {
+ if(NULL!=cluster->belowLayer) {
+ fwrite(&cluster->N, sizeof(cluster->N), 1, fpt);
+ fwrite(&cluster->M, sizeof(cluster->M), 1, fpt);
+ fwrite(&cluster->prevN, sizeof(cluster->prevN), 1, fpt);
+ fwrite(&cluster->prevM, sizeof(cluster->prevM), 1, fpt);
+ fwrite(&cluster->distance, sizeof(cluster->distance), 1, fpt);
+ fwrite(&cluster->belowLayer->N, sizeof(cluster->belowLayer->N), 1, fpt);
+ fwrite(&cluster->belowLayer->M, sizeof(cluster->belowLayer->M), 1, fpt);
+ } else {
+ clusterLogWriteOneRecordBinary2(cluster, fpt, 0);
+ }
+
+ if(NULL!=cluster->belowLayerForN) {
+ fwrite(&cluster->belowLayerForN->N, sizeof(cluster->belowLayerForN->N), 1, fpt);
+ fwrite(&cluster->belowLayerForN->M, sizeof(cluster->belowLayerForN->M), 1, fpt);
+ } else {
+ N = -1;
+ M = -1;
+ fwrite(&N, sizeof(N), 1, fpt);
+ fwrite(&M, sizeof(M), 1, fpt);
+ }
+ if(NULL!=cluster->belowLayerForM) {
+ fwrite(&cluster->belowLayerForM->N, sizeof(cluster->belowLayerForM->N), 1, fpt);
+ fwrite(&cluster->belowLayerForM->M, sizeof(cluster->belowLayerForM->M), 1, fpt);
+ } else {
+ N = -1;
+ M = -1;
+ fwrite(&N, sizeof(N), 1, fpt);
+ fwrite(&M, sizeof(M), 1, fpt);
+ }
+ break;
+ }
+ case 3: {
+ fwrite(&cluster->N, sizeof(cluster->N), 1, fpt);
+ fwrite(&cluster->M, sizeof(cluster->M), 1, fpt);
+ fwrite(&cluster->prevN, sizeof(cluster->prevN), 1, fpt);
+ fwrite(&cluster->prevM, sizeof(cluster->prevM), 1, fpt);
+ fwrite(&cluster->distance, sizeof(cluster->distance), 1, fpt);
+ fwrite(&cluster->firstN, sizeof(cluster->firstN), 1, fpt);
+ fwrite(&cluster->firstM, sizeof(cluster->firstM), 1, fpt);
+ fwrite(&cluster->originalN, sizeof(cluster->originalN), 1, fpt);
+ fwrite(&cluster->originalM, sizeof(cluster->originalM), 1, fpt);
+
+ if(0<cluster->clusterSize){
+ fwrite(&cluster->clusterSize, sizeof(cluster->clusterSize), 1, fpt);
+ } else {
+ N = -1;
+ fwrite(&N, sizeof(N), 1, fpt);
+ }
+ if(cluster->belowLayerForN != NULL) {
+ fwrite(&cluster->belowLayerForN->clusterSize, sizeof(cluster->belowLayerForN->clusterSize), 1, fpt);
+ } else {
+ N = 1;
+ fwrite(&N, sizeof(N), 1, fpt);
+ }
+ if(cluster->belowLayerForM != NULL) {
+ fwrite(&cluster->belowLayerForM->clusterSize, sizeof(cluster->belowLayerForM->clusterSize), 1, fpt);
+ } else {
+ M = 1;
+ fwrite(&M, sizeof(M), 1, fpt);
+ }
+
+ if(0<cluster->clusterNumber){
+ fwrite(&cluster->clusterNumber, sizeof(cluster->clusterNumber), 1, fpt);
+ } else {
+ N = -1;
+ fwrite(&N, sizeof(N), 1, fpt);
+ }
+ break;
+ }
+ case 4: {
+ clusterLogOneRecord* tmp;
+ for(tmp=cluster; tmp!=NULL; tmp=tmp->belowLayer) {
+ while(tmp->belowLayerForN==NULL || tmp->belowLayerForM == NULL) {
+ if(tmp->prev!=NULL) {
+ tmp = tmp->prev;
+ } else {
+ exit(EXIT_FAILURE);
+ }
+ }
+
+ fwrite(&cluster->N, sizeof(cluster->N), 1, fpt);
+ fwrite(&cluster->M, sizeof(cluster->M), 1, fpt);
+ fwrite(&cluster->prevN, sizeof(cluster->prevN), 1, fpt);
+ fwrite(&cluster->prevM, sizeof(cluster->prevM), 1, fpt);
+ fwrite(&cluster->distance, sizeof(cluster->distance), 1, fpt);
+ fwrite(&tmp->belowLayerForN->N, sizeof(cluster->belowLayerForN->N), 1, fpt);
+ fwrite(&tmp->belowLayerForN->M, sizeof(cluster->belowLayerForN->M), 1, fpt);
+ }
+ break;
+ }
+ default: {
+ break;
+ }
+ }
+ }
+ return cluster;
+}
+
+clusterLogOneRecord*
clusterLogWriteAll(clusterLog* cluster, FILE* fpt, int mode)
{
clusterLogOneRecord* last=NULL;
}
clusterLogOneRecord*
+clusterLogWriteAllBinary2(clusterLog* cluster, FILE* fpt, int mode)
+{
+ clusterLogOneRecord* last=NULL;
+
+ cluster->current = cluster->top;
+ if(NULL==cluster->current) {
+ fprintf(stderr, "No Cluster\n");
+ exit(EXIT_FAILURE);
+ }
+ while(NULL!=clusterLogWriteBinary2(cluster, fpt, mode)) {
+ last = cluster->current;
+ cluster->current = cluster->current->next;
+ }
+ return last;
+}
+
+clusterLogOneRecord*
clusterLogWriteAllBinary(clusterLog* in, char* basename, int mode)
{
clusterLogOneRecord* last = NULL;
WORLDNAME=Tools
WORLDNAME=Tools
WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+WORLDNAME=Tools
+++ /dev/null
-include ../Config/Define.inc
-include Config/Define.inc
-include .Source
-
-include Config/Target.inc
--- /dev/null
+/Users/tacyas/Eos/src/Config/Template/ToolsHomeTemplate.Dir/Makefile
\ No newline at end of file
ctfDeterminationFromThonRing \
ctfDetermine \
ctfEnvelopFunction \
+ctfEnvelopFunctionEstimate \
ctfFunction \
ctfFunctionServer \
ctfInfoSet \
break;
}
}
+
+ ctfInfoWrite(info.fptOut, result, "", 0);
return 0;
}
--- /dev/null
+OBJECTNAME = ctfEnvelopFunctionEstimate
+EXTRA_LIB =
+EXTRA_CCOPTS =
+EXTRA_INC =
--- /dev/null
+# OptionControlFile
+# FileFormat
+"-i","-i[nput]","Input:","Essential","1","1","In","inFile::mrcImage","NULL"
+"-o","-o[utput]","Output:","Optional","1","1","Out","outFile::ASCII","stdout"
+"-degree","-degree","[dim]","Optional","1","1","degree","Integer","6"
+"-Range","-Range","[/A]","Optional","2","1","CutLow","Real","0.01","2","CutHigh","Real","0.2"
+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
--- /dev/null
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+include Config/Define.inc
+
+all:
+ cd src; make all; cd ..
+
+install:
+ cd src; make install; cd ..
+
+
+putSF:
+ if [ -f private ] ; \
+ then \
+ echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
+ else \
+ cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
+ fi
+
+put:
+ cd src; make put; cd ..
+
+clean:
+ cd src; make clean; cd ..
+
+depend:
+ cd src; make depend; cd ..
+
+check:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; make depend
+
+update:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; echo "Y" | make update
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+backup:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+backup-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+distribute:
+ cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+distribute-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+eosintroduce:
+ ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./
+
+include Config/Target.inc
--- /dev/null
+install:
+ cd ../src; make install-doc; cd ../doc
--- /dev/null
+#ifndef CONFIG_H
+#define CONFIG_H
+
+#include "../inc/ctfEnvelopFunctionEstimate.h"
+
+#endif /* CONFIG_H */
--- /dev/null
+#ifndef CTFENVELOPFUNCTIONESTIMATE_H
+#define CTFENVELOPFUNCTIONESTIMATE_H
+#include <stdio.h>
+#include <stdlib.h>
+
+#define OPTION_FLAG '-'
+#define OPTION_FLAG_POS (0)
+#define OPTION_POS (1)
+
+
+
+
+typedef struct ctfEnvelopFunctionEstimateInfo {
+ long flagRedirect;
+
+ long flagIn;
+ char* In;
+ FILE* fptIn;
+
+ long flagOut;
+ char* Out;
+ FILE* fptOut;
+
+ long flagdegree;
+ long degree;
+
+ long flagCutLow;
+ float CutLow;
+
+ long flagCutHigh;
+ float CutHigh;
+
+ long flagconfigFile;
+ char* configFile;
+ FILE* fptconfigFile;
+
+ long flagmode;
+ long mode;
+
+} ctfEnvelopFunctionEstimateInfo;
+#ifdef __cplusplus
+extern "C" {
+#endif
+extern void argCheck(ctfEnvelopFunctionEstimateInfo* info, int argc, char* avgv[]);
+extern void khorosInit(int argc, char* avgv[]);
+extern void init0(ctfEnvelopFunctionEstimateInfo* info);
+extern void init1(ctfEnvelopFunctionEstimateInfo* info);
+extern void usage(char* usage);
+extern void additionalUsage(void);
+extern void htmlBeforeUsage(char* usage);
+extern void htmlAfterUsage(char* usage);
+#ifdef __cplusplus
+};
+#endif
+#endif /* CTFENVELOPFUNCTIONESTIMATE_H */
--- /dev/null
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+EOSHOME=../../../../../
+DSTDIR=$(EOSHOME)/bin
+DSTDOC=$(EOSHOME)/doc
+DSTTAR=$(EOSHOME)/tar
+
+INCFILES =
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c \
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc \
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o \
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo \
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+all: $(OSTYPE)/$(OBJECTNAME)
+ if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+
+debug: $(OSTYPE)/$(OBJECTNAME).debug
+
+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
+
+
+$(OSTYPE)/$(OBJECTNAME)::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).debug::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).cudagdb::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+edit:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsEdit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsEdit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsEdit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsEdit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsEdit OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+unedit:
+ @if [ -w $(OBJECTNAME).c ]; \
+ then \
+ sccsUnedit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are not editable"; \
+ fi
+ @if [ -w wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsUnedit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are not editable."; \
+ fi
+ @if [ -w ruby/$(OBJECTNAME).rb]; \
+ then \
+ cd ruby; sccsUnedit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsUnedit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsUnedit OptionControlFile; \
+ else \
+ echo "OptionControlFile are not editable."; \
+ fi
+
+report:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsReport $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsReport $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsReport $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ] ; \
+ then \
+ cd perl; sccsReport $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsReport OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+clean :
+ rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
+ $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
+ $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
+ $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
+ $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
+ *.bak *.$(OSTYPE) core
+
+install: install-bin install-doc install-wish install-ruby install-shell install-perl
+ @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
+ then \
+ if [ -x $(KHOROS_KGENOBJ) ] ; \
+ then \
+ make install-khoros ; \
+ fi; \
+ fi
+
+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+
+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
+ @echo ---- Installing to bin
+ @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+ @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
+ then \
+ mkdir $(DSTDIR)/$(OSTYPE); \
+ fi
+ @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
+ then \
+ echo "Compilation is complete"; \
+ $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
+ $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ else \
+ echo "Compilation is incomplete. $(OBJECTNAME)"; \
+ fi
+ @echo ---- end of bin
+
+install-wish:
+ @if [ -d wish ]; \
+ then \
+ echo "---- Tcl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
+ touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ echo "---- Tcl/Tk file Installed";\
+ fi
+
+install-ruby:
+ @if [ -d ruby ]; \
+ then \
+ echo "---- Ruby/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
+ echo "---- Ruby/Tk file Installed"; \
+ fi
+
+install-perl:
+ @if [ -d perl ]; \
+ then \
+ echo "---- Perl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
+ fi; \
+ $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
+ echo "---- Perl/Tk file Installed"; \
+ fi
+
+install-shell:
+ @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi
+ @if [ -d shell ]; \
+ then \
+ echo "---- Shell file Install"; \
+ if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
+ echo "---- Shell file Installed"; \
+ fi
+
+install-khoros:
+ @echo Installing to khoros
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
+ then \
+ echo kgenobj;\
+ $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
+ fi
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
+ fi
+ @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
+ if [ $? ] ; \
+ then \
+ echo "-- setting khoros ---" ; \
+ if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
+ then \
+ $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
+ $(RM) -f $(OBJECTNAME).pane ; \
+ $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
+ $(CD) ../../ ; \
+ $(CHMOD) -R 555 $(OBJECTNAME); \
+ else \
+ echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
+ fi ; \
+ else \
+ echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
+ fi ; \
+ echo "-- end of khoros-installing"; \
+ fi
+
+install-doc: html
+ @if [ ! -d $(DSTDOC)/SmallTools ]; \
+ then \
+ mkdir $(DSTDOC)/SmallTools ;\
+ fi
+ @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
+ then \
+ $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
+ fi
+ @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f ../doc/*.html ]; \
+ then \
+ $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
+ fi
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
+ then \
+ cd $(DSTDOC)/SmallTools; $(MAKE); \
+ fi
+
+html: $(OBJECTNAME).html
+
+configFileRead:
+ @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
+
+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
+ @echo creating html
+ @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
+ @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
+ @$(RM) $(OBJECTNAME).html.tmp
+
+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
+ @ln -s -f ../sbin/MachineIndependent $@
+
+depend::
+ @echo dependency checking now
+ @if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+ rm -f $(OSTYPE)/.Depend
+ #echo C
+ @if [ -f $(OBJECTNAME).c ] ; \
+ then \
+ echo "dependency: *.c"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
+ fi
+ #echo CC
+ @if [ -f $(OBJECTNAME).cc ] ; \
+ then \
+ echo "dependency: *.cc"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).ccm ] ; \
+ then \
+ echo "dependency: *.ccm"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).cu ] ; \
+ then \
+ echo "dependency: *.cu"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
+ fi
+
+update:../Config/OptionControlFile
+ maketool $(CLASSNAME) $(OBJECTNAME) update
+
+changeName::
+
+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
+ @if [ -f test/Makefile ] ; \
+ then \
+ cd test; make ; \
+ else \
+ echo "No test Makefile"; \
+ fi
+
+TestDir::
+ @if [ ! -d test ] ; \
+ then \
+ echo "Creating test dir"; \
+ mkdir test; \
+ fi
+ @if [ ! -f test/Makefile ] ; \
+ then \
+ echo "Creating Makefile"; \
+ cd test; \
+ protoTestMakefileCreate; \
+ fi
+ @if [ ! -d test/data ]; \
+ then \
+ mkdir $(EOSHOME)/data/$(OBJECTNAME); \
+ cd test; \
+ ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
+ fi
+
+tar::
+ cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
+ ../bin/*/$(OBJECTNAME).* \
+ ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
+ ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
+
+-include $(OSTYPE)/.Depend
+-include ../Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64
\ No newline at end of file
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+argCheck(ctfEnvelopFunctionEstimateInfo* info, int argc, char* argv[])
+{
+ long i;
+ char s[1024];
+ FILE* fpt;
+
+ if(NULL==(fpt=fopen(".EosLog", "a+"))) {
+
+ } else {
+ for(i=0; i<argc; i++) {
+ fprintf(fpt, "%s ", argv[i]);
+ }
+ fprintf(fpt, "\n");
+ fclose(fpt);
+ }
+ for(i=1; i<argc; i++) {
+ if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
+ SSWITCH(argv[i]+OPTION_POS)
+ SCASE("i") {
+ if(i+1<argc) {
+ info->In = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagIn++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("o") {
+ if(i+1<argc) {
+ info->Out = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOut++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("degree") {
+ if(i+1<argc) {
+ info->degree = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagdegree++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("Range") {
+ if(i+2<argc) {
+ info->CutLow = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagCutLow++;
+ info->CutHigh = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagCutHigh++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("c") {
+ if(i+1<argc) {
+ info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagconfigFile++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("m") {
+ if(i+1<argc) {
+ info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmode++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("h") {
+ usage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SCASE("html") {
+ htmlBeforeUsage(argv[0]);
+ usage(argv[0]);
+ htmlAfterUsage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SDEFAULT {
+ fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ break;
+ }
+ SSWITCHEND;
+ }
+ }
+}
--- /dev/null
+/*
+# ctfEnvelopFunctionEstimate : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : ctfEnvelopFunctionEstimate
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#define GLOBAL_DECLARATION
+#include "../inc/config.h"
+
+#define DEBUG
+#include "genUtil.h"
+#include "Memory.h"
+#include "ctfInfo.h"
+#include "mrcImage.h"
+
+#include "./lctfDetermination.h"
+#include "./powerspectraTangentLine.h"
+#include "./ctfInfoWrite2.h"
+#include "./lmrcFSInfoScatteringAngularDistributionAverageSection.h"
+
+
+/*
+Example:
+typedef struct lctfEnvelopFunctionEstimateInfo {
+ float a;
+ int b;
+} lctfEnvelopFunctionEstimateInfo;
+
+typedef enum lctfEnvelopFunctionEstimateMode {
+ a=0,
+ b=1
+} lctfEnvelopFunctionEstimateMode;
+*/
+
+int
+main(int argc, char* argv[])
+{
+ ctfEnvelopFunctionEstimateInfo info;
+ mrcImage in;
+ floatVector* spacing;
+ floatVector* scatter;
+ float** belowCoefficient;
+ float** aboveCoefficient;
+ ctfInfo ini;
+ lctfDetermineInfo linfo;
+ int i;
+
+ init0(&info);
+ argCheck(&info, argc, argv);
+ init1(&info);
+
+ DEBUGPRINT("Program Start\n");
+
+ linfo.degree = info.degree;
+ ini.CutLow = info.CutLow;
+ ini.CutHigh = info.CutHigh;
+
+ mrcFileRead(&in, info.In, "in main", 0);
+ scatter = lmrcFSInfoScatteringAngularDistributionAverage(&in);
+ spacing = lmrcFSInfoSpacing(&in);
+
+ belowCoefficient = MemoryAllocate(float*, linfo.degree+1, "in lctfDeterminationByTangent");
+ for(i=0; i<linfo.degree+1; i++) {
+ belowCoefficient[i] = MemoryAllocate(float, i+1, "in lctfDeterminationByTangent");
+ }
+ aboveCoefficient = MemoryAllocate(float*, linfo.degree+1, "in lctfDeterminationByTangent");
+ for(i=0; i<linfo.degree+1; i++) {
+ aboveCoefficient[i] = MemoryAllocate(float, i+1, "in lctfDeterminationByTangent");
+ }
+
+ TangentLine(spacing, scatter, belowCoefficient, aboveCoefficient, &ini, &linfo, info.mode);
+ TangentLinePrint(info.fptOut, spacing, scatter, belowCoefficient, aboveCoefficient, &linfo, info.mode);
+
+ exit(EXIT_SUCCESS);
+}
+
+void
+additionalUsage()
+{
+ fprintf(stderr, "----- Additional Usage -----\n");
+}
--- /dev/null
+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
+ -M 1 1 52x1+0+0 +1+0 ' ' subform
+ -P 1 0 52x1+0+1 +0+0 ' ' ctfEnvelopFunctionEstimate
+ -D 1 0 9x1+0+0 'Options' _gui_options
+ -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
+ -E
+ -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/ctfEnvelopFunctionEstimate
+ -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/doc/ctfEnvelopFunctionEstimate.doc help
+ -Q 1 0 5.25x1+47+0 'Close'
+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'Input:' i
+ -O 1 0 1 0 0 1 -1x1+1+3.000000 ' ' 'Out' 'Output:' o
+ -i 1 0 1 0 0 -1x1+1+4.500000 0 0 6 0 0 'degree' '[dim]' degree
+ -I 1 0 0 1 0 1 -1x1+1+6 ' ' '0.01' 'CutLow' [/A]
+ -I 1 0 1 0 0 1 -1x1+1+7.500000 ' ' 'configFile' 'ConfigurationFile' c
+ -i 1 0 1 0 0 -1x1+1+9.000000 0 0 0 0 0 'mode' 'Mode' m
+ -E
+ -E
+-E
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+init0(ctfEnvelopFunctionEstimateInfo* info)
+{
+ info->fptIn = NULL; info->flagIn = 0;
+ info->fptOut = stdout; info->flagOut = 0;
+ info->degree = 6; info->flagdegree = 0;
+ info->CutLow = 0.01; info->flagCutLow = 0;
+ info->CutHigh = 0.2; info->flagCutHigh = 0;
+ info->fptconfigFile = NULL; info->flagconfigFile = 0;
+ info->mode = 0; info->flagmode = 0;
+}
+
+void
+init1(ctfEnvelopFunctionEstimateInfo* info)
+{
+ char s[1024];
+ int i;
+ if(!info->flagIn) {
+ stringGetFromFile(s, "In", stdin, stdout, 0);
+ info->In = stringGetNthWord(s, 1, " ,\t");
+ info->flagIn++;
+ }
+ if(info->flagIn) {
+ info->fptIn = fileOpen(info->In, "r");
+ }
+
+ if(info->flagOut) {
+ info->fptOut = fileOpen(info->Out, "w");
+ }
+
+ if(info->flagdegree) {
+ }
+
+ if(info->flagCutLow) {
+ }
+
+ if(info->flagCutHigh) {
+ }
+
+ if(info->flagconfigFile) {
+ info->fptconfigFile = fileOpen(info->configFile, "r");
+ }
+
+ if(info->flagmode) {
+ }
+
+}
+#ifdef KHOROS
+#include <stdio.h>
+#include "bootstrap.h"
+#include "dataserv.h"
+#include "datamanip.h"
+extern void func_usage_additions(void);
+extern void func_free_args(kexit_status status, kaddr client_data);
+extern void func_get_args(kform* pane);
+
+void
+func_usage_additions(void)
+{
+}
+void
+func_free_args(kexit_status status, kaddr client_data)
+{
+}
+void
+func_get_args(kform* pane)
+{
+}
+void
+khorosInit(int argc, char* argv[])
+{
+ char* eospath;
+ char panepath[1024];
+ FILE* fpt;
+
+ eospath = getenv("EOS_HOME");
+ sprintf(panepath, "%s/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/ctfEnvelopFunctionEstimate.pane", eospath);
+ khoros_initialize(argc, argv, "EOS");
+ fpt = fopen(panepath, "r"); if(NULL!=fpt) {
+ fclose(fpt);
+ kclui_initialize(panepath, KGEN_NONE, "EOS", "ctfEnvelopFunctionEstimate",
+ func_usage_additions,
+ func_get_args,
+ func_free_args);
+ }
+}
+#endif /* KHOROS */
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
+void
+usage(char* thisProgram)
+{
+ fprintf(stderr, "Usage: %s\n", thisProgram);
+ fprintf(stderr, "Options:\n");
+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:\n");
+ fprintf(stderr, " [-o[utput] Out (stdout ).as(outFile::ASCII ) ] :Optional :Output:\n");
+ fprintf(stderr, " [-degree degree (6 ).as(Integer ) ] :Optional :[dim]\n");
+ fprintf(stderr, " [-Range CutLow (0.01 ).as(Real ) \n CutHigh (0.2 ).as(Real ) ] :Optional :[/A]\n");
+ fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
+ fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
+ additionalUsage();
+}
+
+void
+htmlBeforeUsage(char* thisProgram)
+{
+ fprintf(stderr, "<HTML>\n");
+ fprintf(stderr, "<HEAD>\n");
+ fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
+ fprintf(stderr, "</HEAD>\n");
+ fprintf(stderr, "<BODY>\n");
+ fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
+ fprintf(stderr, "<H2>Usage</H2>\n");
+ fprintf(stderr, "<PRE>\n");
+}
+
+void
+htmlAfterUsage(char* thisProgram)
+{
+ fprintf(stderr, "</PRE>\n");
+ fprintf(stderr, "</BODY>\n");
+ fprintf(stderr, "</HTML>\n");
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
mrcImageShapeOrientation \
mrcImageShapePCA \
mrcImageShapePCAFit \
+mrcImageShapeSearch \
mrcImageShift \
mrcImageShiftFollowingGC \
mrcImageShrink \
3: 3D Cross3x3x3: 6-neighbour
4: 3D Cubic3x3x3: 26-neighbour
5: 3D Sphere, need (radius, n(cubic size))
+6: 2D Rectangle, need nx, ny
+7: 3D Cuboid, need nx, ny, nz
+8: 3D Cylindar, need r, nx, ny, nz
-----
Dilation: Max for image : Or for binary image
Erosion: Min for image : And for binary image
3: 3D Cross3x3x3: 6-neighbour
4: 3D Cubic3x3x3: 26-neighbour
5: 3D Sphere, need (radius, n(cubic size))
+6: 2D Rectangle, need nx, ny
+7: 3D Cuboid, need nx, ny, nz
+8: 3D Cylindar, need r, nx, ny, nz
-----
Dilation: Max for image : Or for binary image
Erosion: Min for image : And for binary image
# OptionControlFile
# FileFormat
-"-i","-i[nput]","Input: MRC","Essential","1","1","In","inFile","NULL"
-"-o","-o[utput]","Output: MRC","Essential","1","1","Out","outFile","NULL"
-"-oSE","-o[utput]SE","Output: MRC(SE)","Optional","1","1","OutSE","outFile","NULL"
+"-i","-i[nput]","Input: MRC","Essential","1","1","In","inFile::mrcImage","NULL"
+"-o","-o[utput]","Output: MRC","Essential","1","1","Out","outFile::mrcImage","NULL"
+"-oSE","-o[utput]SE","Output: MRC(SE)","Optional","1","1","OutSE","outFile::mrcImage","NULL"
"-SE","-S[tructuring]E[lement]","StructuringElement","Optional","1","1","SEmode","Integer","0"
"-r","-r[adius]","Radius","Optional","1","1","radius","Integer","2"
"-n","-n","size","Optional","1","1","n","Integer","5"
<PRE>
Usage: mrcImageErosion
Options:
- [-i[nput] In (NULL ).as(inFile ) ] :Essential :Input: MRC
- [-o[utput] Out (NULL ).as(outFile ) ] :Essential :Output: MRC
- [-o[utput]SE OutSE (NULL ).as(outFile ) ] :Optional :Output: MRC(SE)
+ [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input: MRC
+ [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output: MRC
+ [-o[utput]SE OutSE (NULL ).as(outFile::mrcImage ) ] :Optional :Output: MRC(SE)
[-S[tructuring]E[lement]SEmode (0 ).as(Integer ) ] :Optional :StructuringElement
[-r[adius] radius (2 ).as(Integer ) ] :Optional :Radius
[-n n (5 ).as(Integer ) ] :Optional :size
3: 3D Cross3x3x3: 6-neighbour
4: 3D Cubic3x3x3: 26-neighbour
5: 3D Sphere, need (radius, n(cubic size))
+6: 2D Rectangle, need nx, ny
+7: 3D Cuboid, need nx, ny, nz
+8: 3D Cylindar, need r, nx, ny, nz
-----
Dilation: Max for image : Or for binary image
Erosion: Min for image : And for binary image
{
fprintf(stderr, "Usage: %s\n", thisProgram);
fprintf(stderr, "Options:\n");
- fprintf(stderr, " [-i[nput] In (NULL ).as(inFile ) ] :Essential :Input: MRC\n");
- fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile ) ] :Essential :Output: MRC\n");
- fprintf(stderr, " [-o[utput]SE OutSE (NULL ).as(outFile ) ] :Optional :Output: MRC(SE)\n");
+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input: MRC\n");
+ fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output: MRC\n");
+ fprintf(stderr, " [-o[utput]SE OutSE (NULL ).as(outFile::mrcImage ) ] :Optional :Output: MRC(SE)\n");
fprintf(stderr, " [-S[tructuring]E[lement]SEmode (0 ).as(Integer ) ] :Optional :StructuringElement\n");
fprintf(stderr, " [-r[adius] radius (2 ).as(Integer ) ] :Optional :Radius\n");
fprintf(stderr, " [-n n (5 ).as(Integer ) ] :Optional :size\n");
3: 3D Cross3x3x3: 6-neighbour
4: 3D Cubic3x3x3: 26-neighbour
5: 3D Sphere, need (radius, n(cubic size))
+6: 2D Rectangle, need nx, ny
+7: 3D Cuboid, need nx, ny, nz
+8: 3D Cylindar, need r, nx, ny, nz
-----
Dilation: Max for image : Or for binary image
Erosion: Min for image : And for binary image
--- /dev/null
+OBJECTNAME = mrcImageShapeSearch
+EXTRA_LIB =
+EXTRA_CCOPTS =
+EXTRA_INC =
--- /dev/null
+# OptionControlFile
+# FileFormat
+"-i","-i[nput]","Input","Essential","1","1","In","inFile::mrcImage","NULL"
+"-o","-o[utput]","Output","Essential","1","1","Out","outFile::mrcImage","NULL"
+"-Shape","-Shape","Output","Essential","1","1","Shape","outFile::mrcImage","NULL"
+"-r","-r[adius]","Radius[pixel]","Optional","2","1","minR","Integer","3","2","maxR","Integer","5"
+"-l","-l[ength]","Length[pixel]","Optional","2","1","minL","Integer","3","2","maxL","Integer","5"
+"-Phi","-Phi","around z-axis[degree]","Optional","3","1","minPhi","Real","0.0","2","maxPhi","Real","359.0","3","delPhi","Real","1.0"
+"-Theta","-Theta","around x-axis[degree]","Optional","3","1","minTheta","Real","0.0","2","maxTheta","Real","359.0","3","delTheta","Real","1.0"
+"-Psi","-Psi","around x-axis[degree]","Optional","3","1","minPsi","Real","0.0","2","maxPsi","Real","359.0","3","delPsi","Real","1.0"
+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
--- /dev/null
+include ../../../Config/Define.inc
+include ../../Config/Define.inc
+include ../Config/Define.inc
+include Config/Define.inc
+
+all:
+ cd src; make all; cd ..
+
+install:
+ cd src; make install; cd ..
+
+
+putSF:
+ if [ -f private ] ; \
+ then \
+ echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
+ else \
+ cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
+ fi
+
+put:
+ cd src; make put; cd ..
+
+clean:
+ cd src; make clean; cd ..
+
+depend:
+ cd src; make depend; cd ..
+
+check:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; make depend
+
+update:
+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
+ echo making directory; \
+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
+ fi
+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
+ @$(RM) src/Makefile
+ @echo "New src/Makefile"
+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
+ @cd src; touch $(OSTYPE)/.Depend; echo "Y" | make update
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+backup:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+backup-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
+
+distribute:
+ cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+distribute-all:
+ @cd ../../../..; \
+ echo $(OBJECTNAME) ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
+
+eosintroduce:
+ ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./
+
+include Config/Target.inc
--- /dev/null
+install:
+ cd ../src; make install-doc; cd ../doc
--- /dev/null
+#ifndef CONFIG_H
+#define CONFIG_H
+
+#include "../inc/mrcImageShapeSearch.h"
+
+#endif /* CONFIG_H */
--- /dev/null
+#ifndef MRCIMAGESHAPESEARCH_H
+#define MRCIMAGESHAPESEARCH_H
+#include <stdio.h>
+#include <stdlib.h>
+
+#define OPTION_FLAG '-'
+#define OPTION_FLAG_POS (0)
+#define OPTION_POS (1)
+
+
+
+
+typedef struct mrcImageShapeSearchInfo {
+ long flagRedirect;
+
+ long flagIn;
+ char* In;
+ FILE* fptIn;
+
+ long flagOut;
+ char* Out;
+ FILE* fptOut;
+
+ long flagShape;
+ char* Shape;
+ FILE* fptShape;
+
+ long flagminR;
+ long minR;
+
+ long flagmaxR;
+ long maxR;
+
+ long flagminL;
+ long minL;
+
+ long flagmaxL;
+ long maxL;
+
+ long flagminPhi;
+ float minPhi;
+
+ long flagmaxPhi;
+ float maxPhi;
+
+ long flagdelPhi;
+ float delPhi;
+
+ long flagminTheta;
+ float minTheta;
+
+ long flagmaxTheta;
+ float maxTheta;
+
+ long flagdelTheta;
+ float delTheta;
+
+ long flagconfigFile;
+ char* configFile;
+ FILE* fptconfigFile;
+
+ long flagmode;
+ long mode;
+
+} mrcImageShapeSearchInfo;
+#ifdef __cplusplus
+extern "C" {
+#endif
+extern void argCheck(mrcImageShapeSearchInfo* info, int argc, char* avgv[]);
+extern void khorosInit(int argc, char* avgv[]);
+extern void init0(mrcImageShapeSearchInfo* info);
+extern void init1(mrcImageShapeSearchInfo* info);
+extern void usage(char* usage);
+extern void additionalUsage(void);
+extern void htmlBeforeUsage(char* usage);
+extern void htmlAfterUsage(char* usage);
+#ifdef __cplusplus
+};
+#endif
+#endif /* MRCIMAGESHAPESEARCH_H */
--- /dev/null
+include ../Config/Define.inc
+include ../../Config/Define.inc
+include ../../../Config/Define.inc
+include ../../../../Config/Define.inc
+
+EOSHOME=../../../../../
+DSTDIR=$(EOSHOME)/bin
+DSTDOC=$(EOSHOME)/doc
+DSTTAR=$(EOSHOME)/tar
+
+INCFILES =
+
+LIBFILES = \
+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
+
+LIBFILESDEBUG = \
+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
+
+SRCC = \
+ $(OBJECTNAME).c \
+ init.c \
+ argCheck.c \
+ usage.c \
+ util.c \
+
+SRCCXX = \
+ $(OBJECTNAME).cc \
+ init.cc \
+ argCheck.cc \
+ usage.cc \
+ util.cc \
+
+MODULES = \
+ $(OBJECTNAME).o \
+ init.o \
+ argCheck.o \
+ usage.o \
+ util.o \
+
+REALMODULES = \
+ $(OSTYPE)/$(OBJECTNAME).o \
+ $(OSTYPE)/init.o \
+ $(OSTYPE)/argCheck.o \
+ $(OSTYPE)/usage.o \
+ $(OSTYPE)/util.o
+
+MODULESDEBUG = \
+ $(OBJECTNAME).debugo \
+ init.debugo \
+ argCheck.debugo \
+ usage.debugo \
+ util.debugo \
+
+REALMODULESDEBUG = \
+ $(OSTYPE)/$(OBJECTNAME).debugo \
+ $(OSTYPE)/init.debugo \
+ $(OSTYPE)/argCheck.debugo \
+ $(OSTYPE)/usage.debugo \
+ $(OSTYPE)/util.debugo
+
+
+all: $(OSTYPE)/$(OBJECTNAME)
+ if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+
+debug: $(OSTYPE)/$(OBJECTNAME).debug
+
+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
+
+
+$(OSTYPE)/$(OBJECTNAME)::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).debug::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+$(OSTYPE)/$(OBJECTNAME).cudagdb::
+ @$(RM) -f $(OSTYPE)/Makefile ; \
+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
+ cd $(OSTYPE); \
+ $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
+
+cvsupdate::
+ cvs -d $(EOS_CVSROOT) update -d
+
+cvscommit::
+ cvs -d $(EOS_CVSROOT) commit
+
+edit:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsEdit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsEdit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsEdit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsEdit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsEdit OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+unedit:
+ @if [ -w $(OBJECTNAME).c ]; \
+ then \
+ sccsUnedit $(OBJECTNAME).c; \
+ else \
+ echo "Source files are not editable"; \
+ fi
+ @if [ -w wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsUnedit $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are not editable."; \
+ fi
+ @if [ -w ruby/$(OBJECTNAME).rb]; \
+ then \
+ cd ruby; sccsUnedit $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w perl/$(OBJECTNAME).pl ]; \
+ then \
+ cd perl; sccsUnedit $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (ruby) are not editable."; \
+ fi
+ @if [ -w ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsUnedit OptionControlFile; \
+ else \
+ echo "OptionControlFile are not editable."; \
+ fi
+
+report:
+ @if [ -r $(OBJECTNAME).c ]; \
+ then \
+ sccsReport $(OBJECTNAME).c; \
+ else \
+ echo "Source files are already editable"; \
+ fi
+ @if [ -r wish/$(OBJECTNAME).wish ]; \
+ then \
+ cd wish; sccsReport $(OBJECTNAME).wish; \
+ else \
+ echo "Source files (wish) are already editable."; \
+ fi
+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
+ then \
+ cd ruby; sccsReport $(OBJECTNAME).rb; \
+ else \
+ echo "Source files (ruby) are already editable."; \
+ fi
+ @if [ -r perl/$(OBJECTNAME).pl ] ; \
+ then \
+ cd perl; sccsReport $(OBJECTNAME).pl ; \
+ else \
+ echo "Source files (perl) are already editable."; \
+ fi
+ @if [ -r ../Config/OptionControlFile ]; \
+ then \
+ cd ../Config; sccsReport OptionControlFile; \
+ else \
+ echo "OptionControlFile are already editable."; \
+ fi
+
+clean :
+ rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
+ $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
+ $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
+ $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
+ $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
+ *.bak *.$(OSTYPE) core
+
+install: install-bin install-doc install-wish install-ruby install-shell install-perl
+ @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
+ then \
+ if [ -x $(KHOROS_KGENOBJ) ] ; \
+ then \
+ make install-khoros ; \
+ fi; \
+ fi
+
+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+
+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
+ @echo ---- Installing to bin
+ @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
+ @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
+ then \
+ mkdir $(DSTDIR)/$(OSTYPE); \
+ fi
+ @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
+ then \
+ echo "Compilation is complete"; \
+ $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
+ $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
+ else \
+ echo "Compilation is incomplete. $(OBJECTNAME)"; \
+ fi
+ @echo ---- end of bin
+
+install-wish:
+ @if [ -d wish ]; \
+ then \
+ echo "---- Tcl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
+ touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
+ echo "---- Tcl/Tk file Installed";\
+ fi
+
+install-ruby:
+ @if [ -d ruby ]; \
+ then \
+ echo "---- Ruby/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
+ echo "---- Ruby/Tk file Installed"; \
+ fi
+
+install-perl:
+ @if [ -d perl ]; \
+ then \
+ echo "---- Perl/Tk file Install"; \
+ if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
+ fi; \
+ $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
+ echo "---- Perl/Tk file Installed"; \
+ fi
+
+install-shell:
+ @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi
+ @if [ -d shell ]; \
+ then \
+ echo "---- Shell file Install"; \
+ if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
+ then \
+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
+ fi ; \
+ $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
+ $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
+ echo "---- Shell file Installed"; \
+ fi
+
+install-khoros:
+ @echo Installing to khoros
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
+ then \
+ echo kgenobj;\
+ $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
+ fi
+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
+ fi
+ @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
+ then \
+ $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
+ if [ $? ] ; \
+ then \
+ echo "-- setting khoros ---" ; \
+ if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
+ then \
+ $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
+ $(RM) -f $(OBJECTNAME).pane ; \
+ $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
+ $(CD) ../../ ; \
+ $(CHMOD) -R 555 $(OBJECTNAME); \
+ else \
+ echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
+ fi ; \
+ else \
+ echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
+ fi ; \
+ echo "-- end of khoros-installing"; \
+ fi
+
+install-doc: html
+ @if [ ! -d $(DSTDOC)/SmallTools ]; \
+ then \
+ mkdir $(DSTDOC)/SmallTools ;\
+ fi
+ @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
+ then \
+ $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
+ fi
+ @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f ../doc/*.html ]; \
+ then \
+ $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
+ fi
+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
+ @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
+ then \
+ cd $(DSTDOC)/SmallTools; $(MAKE); \
+ fi
+
+html: $(OBJECTNAME).html
+
+configFileRead:
+ @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
+
+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
+ @echo creating html
+ @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
+ @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
+ @$(RM) $(OBJECTNAME).html.tmp
+
+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
+ @ln -s -f ../sbin/MachineIndependent $@
+
+depend::
+ @echo dependency checking now
+ @if [ ! -L $(OSTYPE) ] ; then \
+ moveHostdependent; \
+ fi
+ rm -f $(OSTYPE)/.Depend
+ #echo C
+ @if [ -f $(OBJECTNAME).c ] ; \
+ then \
+ echo "dependency: *.c"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
+ fi
+ #echo CC
+ @if [ -f $(OBJECTNAME).cc ] ; \
+ then \
+ echo "dependency: *.cc"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).ccm ] ; \
+ then \
+ echo "dependency: *.ccm"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
+ fi
+ @if [ -f $(OBJECTNAME).cu ] ; \
+ then \
+ echo "dependency: *.cu"; \
+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
+ fi
+
+update:../Config/OptionControlFile
+ maketool $(CLASSNAME) $(OBJECTNAME) update
+
+changeName::
+
+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
+ @if [ -f test/Makefile ] ; \
+ then \
+ cd test; make ; \
+ else \
+ echo "No test Makefile"; \
+ fi
+
+TestDir::
+ @if [ ! -d test ] ; \
+ then \
+ echo "Creating test dir"; \
+ mkdir test; \
+ fi
+ @if [ ! -f test/Makefile ] ; \
+ then \
+ echo "Creating Makefile"; \
+ cd test; \
+ protoTestMakefileCreate; \
+ fi
+ @if [ ! -d test/data ]; \
+ then \
+ mkdir $(EOSHOME)/data/$(OBJECTNAME); \
+ cd test; \
+ ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
+ fi
+
+tar::
+ cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
+ ../bin/*/$(OBJECTNAME).* \
+ ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
+ ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
+
+-include $(OSTYPE)/.Depend
+-include ../Config/Target.inc
--- /dev/null
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64
\ No newline at end of file
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+argCheck(mrcImageShapeSearchInfo* info, int argc, char* argv[])
+{
+ long i;
+ char s[1024];
+ FILE* fpt;
+
+ if(NULL==(fpt=fopen(".EosLog", "a+"))) {
+
+ } else {
+ for(i=0; i<argc; i++) {
+ fprintf(fpt, "%s ", argv[i]);
+ }
+ fprintf(fpt, "\n");
+ fclose(fpt);
+ }
+ for(i=1; i<argc; i++) {
+ if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
+ SSWITCH(argv[i]+OPTION_POS)
+ SCASE("i") {
+ if(i+1<argc) {
+ info->In = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagIn++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("o") {
+ if(i+1<argc) {
+ info->Out = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagOut++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("Shape") {
+ if(i+1<argc) {
+ info->Shape = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagShape++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("r") {
+ if(i+2<argc) {
+ info->minR = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagminR++;
+ info->maxR = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmaxR++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("l") {
+ if(i+2<argc) {
+ info->minL = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagminL++;
+ info->maxL = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmaxL++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("Phi") {
+ if(i+3<argc) {
+ info->minPhi = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagminPhi++;
+ info->maxPhi = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmaxPhi++;
+ info->delPhi = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagdelPhi++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("Theta") {
+ if(i+3<argc) {
+ info->minTheta = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagminTheta++;
+ info->maxTheta = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmaxTheta++;
+ info->delTheta = stringGetNthRealData(argv[i+1], 1, " ,");
+ i++;
+ info->flagdelTheta++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("c") {
+ if(i+1<argc) {
+ info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
+ i++;
+ info->flagconfigFile++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("m") {
+ if(i+1<argc) {
+ info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
+ i++;
+ info->flagmode++;
+ } else {
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ }
+ SBREAK;
+ }
+ SCASE("h") {
+ usage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SCASE("html") {
+ htmlBeforeUsage(argv[0]);
+ usage(argv[0]);
+ htmlAfterUsage(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
+ }
+ SDEFAULT {
+ fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
+ usage(argv[0]);
+ exit(EXIT_FAILURE);
+ break;
+ }
+ SSWITCHEND;
+ }
+ }
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "../inc/config.h"
+#include "genUtil.h"
+#include "String.h"
+#include "File.h"
+#include "Memory.h"
+
+
+void
+init0(mrcImageShapeSearchInfo* info)
+{
+ info->fptIn = NULL; info->flagIn = 0;
+ info->fptOut = NULL; info->flagOut = 0;
+ info->fptShape = NULL; info->flagShape = 0;
+ info->minR = 3; info->flagminR = 0;
+ info->maxR = 5; info->flagmaxR = 0;
+ info->minL = 3; info->flagminL = 0;
+ info->maxL = 5; info->flagmaxL = 0;
+ info->minPhi = 0.0; info->flagminPhi = 0;
+ info->maxPhi = 359.0; info->flagmaxPhi = 0;
+ info->delPhi = 1.0; info->flagdelPhi = 0;
+ info->minTheta = 0.0; info->flagminTheta = 0;
+ info->maxTheta = 359.0; info->flagmaxTheta = 0;
+ info->delTheta = 1.0; info->flagdelTheta = 0;
+ info->fptconfigFile = NULL; info->flagconfigFile = 0;
+ info->mode = 0; info->flagmode = 0;
+}
+
+void
+init1(mrcImageShapeSearchInfo* info)
+{
+ char s[1024];
+ int i;
+ if(!info->flagIn) {
+ stringGetFromFile(s, "In", stdin, stdout, 0);
+ info->In = stringGetNthWord(s, 1, " ,\t");
+ info->flagIn++;
+ }
+ if(info->flagIn) {
+ info->fptIn = fileOpen(info->In, "r");
+ }
+
+ if(!info->flagOut) {
+ stringGetFromFile(s, "Out", stdin, stdout, 0);
+ info->Out = stringGetNthWord(s, 1, " ,\t");
+ info->flagOut++;
+ }
+ if(info->flagOut) {
+ info->fptOut = fileOpen(info->Out, "w");
+ }
+
+ if(!info->flagShape) {
+ stringGetFromFile(s, "Shape", stdin, stdout, 0);
+ info->Shape = stringGetNthWord(s, 1, " ,\t");
+ info->flagShape++;
+ }
+ if(info->flagShape) {
+ info->fptShape = fileOpen(info->Shape, "w");
+ }
+
+ if(info->flagminR) {
+ }
+
+ if(info->flagmaxR) {
+ }
+
+ if(info->flagminL) {
+ }
+
+ if(info->flagmaxL) {
+ }
+
+ if(info->flagminPhi) {
+ }
+
+ if(info->flagmaxPhi) {
+ }
+
+ if(info->flagdelPhi) {
+ }
+
+ if(info->flagminTheta) {
+ }
+
+ if(info->flagmaxTheta) {
+ }
+
+ if(info->flagdelTheta) {
+ }
+
+ if(info->flagconfigFile) {
+ info->fptconfigFile = fileOpen(info->configFile, "r");
+ }
+
+ if(info->flagmode) {
+ }
+
+}
+#ifdef KHOROS
+#include <stdio.h>
+#include "bootstrap.h"
+#include "dataserv.h"
+#include "datamanip.h"
+extern void func_usage_additions(void);
+extern void func_free_args(kexit_status status, kaddr client_data);
+extern void func_get_args(kform* pane);
+
+void
+func_usage_additions(void)
+{
+}
+void
+func_free_args(kexit_status status, kaddr client_data)
+{
+}
+void
+func_get_args(kform* pane)
+{
+}
+void
+khorosInit(int argc, char* argv[])
+{
+ char* eospath;
+ char panepath[1024];
+ FILE* fpt;
+
+ eospath = getenv("EOS_HOME");
+ sprintf(panepath, "%s/src/Tools/mrcImage/mrcImageShapeSearch/src/mrcImageShapeSearch.pane", eospath);
+ khoros_initialize(argc, argv, "EOS");
+ fpt = fopen(panepath, "r"); if(NULL!=fpt) {
+ fclose(fpt);
+ kclui_initialize(panepath, KGEN_NONE, "EOS", "mrcImageShapeSearch",
+ func_usage_additions,
+ func_get_args,
+ func_free_args);
+ }
+}
+#endif /* KHOROS */
--- /dev/null
+/*
+# mrcImageShapeSearch : $Revision$
+# $Date$
+# Created by $Author$
+# Usage : mrcImageShapeSearch
+# Attention
+# $Loccker$
+# $State$
+#
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#define GLOBAL_DECLARATION
+#include "../inc/config.h"
+
+#define DEBUG
+#include "genUtil.h"
+#include "mrcImage.h"
+
+typedef struct lmrcImageShapeSearchInfo {
+ int radius; // Sylinder
+ int minRadius;
+ int maxRadius;
+ int length; // Sylinder
+ int minLength;
+ int maxLength;
+
+ float minTheta;
+ float maxTheta;
+ float delTheta;
+ float minPhi;
+ float maxPhi;
+ float delPhi;
+ float minPsi;
+ float maxPsi;
+ float delPsi;
+
+ mrcImage shape;
+} lmrcImageShapeSearchInfo;
+
+typedef enum lmrcImageShapeSearchMode {
+ lmrcImageShapeSearchModeSylinder=0
+} lmrcImageShapeSearchMode;
+
+extern void lmrcImageShapeSearch(mrcImage* out, mrcImage* in, lmrcImageShapeSearchInfo* linfo, int mode);
+extern void lmrcImageShapeSearchSylinder(mrcImage* out, mrcImage* in, lmrcImageShapeSearchInfo* linfo, int mode);
+extern void lmrcImageShapeSearchModePrint(FILE* fpt);
+
+int
+main(int argc, char* argv[])
+{
+ mrcImageShapeSearchInfo info;
+ lmrcImageShapeSearchInfo linfo;
+ mrcImage in;
+ mrcImage out;
+
+ init0(&info);
+ argCheck(&info, argc, argv);
+ init1(&info);
+
+ DEBUGPRINT("Program Start\n");
+ linfo.minRadius = info.minR;
+ linfo.maxRadius = info.maxR;
+ linfo.minLength = info.minL;
+ linfo.maxLength = info.maxL;
+
+ linfo.minPhi = info.minPhi*RADIAN;
+ linfo.maxPhi = info.maxPhi*RADIAN;
+ linfo.delPhi = info.delPhi*RADIAN;
+ linfo.minTheta = info.minTheta*RADIAN;
+ linfo.maxTheta = info.maxTheta*RADIAN;
+ linfo.delTheta = info.delTheta*RADIAN;
+
+ mrcFileRead(&in, info.In, "in main", 0);
+
+ lmrcImageShapeSearch(&out, &in, &linfo, info.mode);
+
+ mrcFileWrite(&out, info.Out, "in main", 0);
+ mrcFileWrite(&linfo.shape, info.Shape, "in main", 0);
+
+ exit(EXIT_SUCCESS);
+}
+
+void
+additionalUsage()
+{
+ fprintf(stderr, "----- Additional Usage -----\n");
+ lmrcImageShapeSearchModePrint(stderr);
+}
+
+void
+lmrcImageShapeSearchModePrint(FILE* fpt)
+{
+ fprintf(fpt, "%d: Cylinder with radius and length\n", lmrcImageShapeSearchModeSylinder);
+}
+
+
+void
+lmrcImageShapeSearch(mrcImage* out, mrcImage* in, lmrcImageShapeSearchInfo* linfo, int mode)
+{
+ switch(mode) {
+ case lmrcImageShapeSearchModeSylinder: {
+ lmrcImageShapeSearchSylinder(out, in, linfo, mode);
+ break;
+ }
+ default: {
+ fprintf(stderr, "Not supported mode: %d\n", mode);
+ break;
+ }
+ }
+}
+
+
+void
+lmrcImageShapeSearchSylinder(mrcImage* out, mrcImage* in, lmrcImageShapeSearchInfo* linfo, int mode)
+{
+ float x, y, z;
+ float theta, phi, psi;
+ int iPhi, iTheta, iPsi;
+ int nPhi, nTheta, nPsi;
+ int iR;
+
+ nPhi = (int)((linfo->maxPhi -linfo->minPhi) /linfo->delPhi) +1;
+ nTheta = (int)((linfo->maxTheta-linfo->minTheta)/linfo->delTheta)+1;
+ nPsi = 2*M_PI/linfo->delPsi;
+
+ for(z=0; z<in->HeaderN.z; z++) {
+ for(y=0; y<in->HeaderN.y; y++) {
+ for(x=0; x<in->HeaderN.x; x++) {
+ for(iTheta=0; iTheta<nTheta; iTheta++) {
+ theta = linfo->minTheta + iTheta*linfo->delTheta;
+ for(iPhi=0; iPhi<nPhi; iPhi++) {
+ phi = linfo->minPhi + iPhi*linfo->delPhi;
+ for(iR=linfo->minRadius; iR<=linfo->maxRadius; iR++) {
+
+ }
+ }
+ }
+ }
+ }
+ }
+}
+
--- /dev/null
+<HTML>
+<HEAD>
+<TITLE>mrcImageShapeSearch</TITLE>
+</HEAD>
+<BODY>
+<H1>mrcImageShapeSearch</H1>
+<H2>Usage</H2>
+<PRE>
+Usage: mrcImageShapeSearch
+Options:
+ [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input
+ [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output
+ [-Shape Shape (NULL ).as(outFile::mrcImage ) ] :Essential :Output
+ [-r[adius] minR (3 ).as(Integer )
+ maxR (5 ).as(Integer ) ] :Optional :Radius[pixel]
+ [-l[ength] minL (3 ).as(Integer )
+ maxL (5 ).as(Integer ) ] :Optional :Length[pixel]
+ [-Phi minPhi (0.0 ).as(Real )
+ maxPhi (359.0 ).as(Real )
+ delPhi (1.0 ).as(Real ) ] :Optional :around z-axis[degree]
+ [-Theta minTheta (0.0 ).as(Real )
+ maxTheta (359.0 ).as(Real )
+ delTheta (1.0 ).as(Real ) ] :Optional :around x-axis[degree]
+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
+----- Additional Usage -----
+0: Cylinder with radius and length
+</PRE>
+</BODY>
+</HTML>
--- /dev/null
+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
+ -M 1 1 52x1+0+0 +1+0 ' ' subform
+ -P 1 0 52x1+0+1 +0+0 ' ' mrcImageShapeSearch
+ -D 1 0 9x1+0+0 'Options' _gui_options
+ -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
+ -E
+ -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImageShapeSearch
+ -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/mrcImage/mrcImageShapeSearch/doc/mrcImageShapeSearch.doc help
+ -Q 1 0 5.25x1+47+0 'Close'
+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'Input' i
+ -O 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'Out' 'Output' o
+ -O 1 0 1 1 0 1 -1x1+1+4.500000 ' ' 'Shape' 'Output' Shape
+ -I 1 0 0 1 0 1 -1x1+1+6 ' ' '3' 'minR' Radius[pixel]
+ -I 1 0 0 1 0 1 -1x1+1+7 ' ' '3' 'minL' Length[pixel]
+ -I 1 0 0 1 0 1 -1x1+1+9 ' ' '0.0' 'minPhi' around z-axis[degree]
+ -I 1 0 0 1 0 1 -1x1+1+10 ' ' '0.0' 'minTheta' around x-axis[degree]
+ -I 1 0 1 0 0 1 -1x1+1+12.000000 ' ' 'configFile' 'ConfigurationFile' c
+ -i 1 0 1 0 0 -1x1+1+13.500000 0 0 0 0 0 'mode' 'Mode' m
+ -E
+ -E
+-E
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
+void
+usage(char* thisProgram)
+{
+ fprintf(stderr, "Usage: %s\n", thisProgram);
+ fprintf(stderr, "Options:\n");
+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input\n");
+ fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output\n");
+ fprintf(stderr, " [-Shape Shape (NULL ).as(outFile::mrcImage ) ] :Essential :Output\n");
+ fprintf(stderr, " [-r[adius] minR (3 ).as(Integer ) \n maxR (5 ).as(Integer ) ] :Optional :Radius[pixel]\n");
+ fprintf(stderr, " [-l[ength] minL (3 ).as(Integer ) \n maxL (5 ).as(Integer ) ] :Optional :Length[pixel]\n");
+ fprintf(stderr, " [-Phi minPhi (0.0 ).as(Real ) \n maxPhi (359.0 ).as(Real ) \n delPhi (1.0 ).as(Real ) ] :Optional :around z-axis[degree]\n");
+ fprintf(stderr, " [-Theta minTheta (0.0 ).as(Real ) \n maxTheta (359.0 ).as(Real ) \n delTheta (1.0 ).as(Real ) ] :Optional :around x-axis[degree]\n");
+ fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
+ fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
+ additionalUsage();
+}
+
+void
+htmlBeforeUsage(char* thisProgram)
+{
+ fprintf(stderr, "<HTML>\n");
+ fprintf(stderr, "<HEAD>\n");
+ fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
+ fprintf(stderr, "</HEAD>\n");
+ fprintf(stderr, "<BODY>\n");
+ fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
+ fprintf(stderr, "<H2>Usage</H2>\n");
+ fprintf(stderr, "<PRE>\n");
+}
+
+void
+htmlAfterUsage(char* thisProgram)
+{
+ fprintf(stderr, "</PRE>\n");
+ fprintf(stderr, "</BODY>\n");
+ fprintf(stderr, "</HTML>\n");
+}
--- /dev/null
+#include <stdio.h>
+#include <stdlib.h>
+#include "../inc/config.h"
+
OSDN Git Service
