modified: .gitignore

	modified:   Makefile

	new file:   bin/mrcImageShapeSearch
	modified:   include/lmrcImageMorphology.h
	modified:   include/powerspectraTangentLine.h
	modified:   src/Objects/DataManip/ctfInfo/src/lctfDetermination.c
	modified:   src/Objects/DataManip/ctfInfo/src/powerspectraTangentLine.c
	modified:   src/Objects/DataManip/ctfInfo/src/powerspectraTangentLine.h
	modified:   src/Objects/DataManip/mrcImage/src/lmrcImageClusterAnalysis.h
	modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMorphology.c
	modified:   src/Objects/DataManip/mrcImage/src/lmrcImageMorphology.h
	modified:   src/Objects/General/Cluster/inc/Cluster.h
	modified:   src/Objects/General/Cluster/src/clusterLogWrite.c
	modified:   src/Tools/Config/Define.inc
	typechange: src/Tools/Makefile
	new file:   src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/

diff --git a/bin/X86MAC64/mrcImageBottomHatTransform b/bin/X86MAC64/mrcImageBottomHatTransform
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diff --git a/bin/X86MAC64/mrcImageClosing b/bin/X86MAC64/mrcImageClosing
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diff --git a/bin/X86MAC64/mrcImageDilation b/bin/X86MAC64/mrcImageDilation
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diff --git a/bin/X86MAC64/mrcImageErosion b/bin/X86MAC64/mrcImageErosion
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diff --git a/bin/X86MAC64/mrcImageOpening b/bin/X86MAC64/mrcImageOpening
index 8b0f718..e204a04 100755 (executable)
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diff --git a/bin/X86MAC64/mrcImageShapeSearch b/bin/X86MAC64/mrcImageShapeSearch
new file mode 100755 (executable)
index 0000000..9327b75
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diff --git a/bin/X86MAC64/mrcImageTopHatTransform b/bin/X86MAC64/mrcImageTopHatTransform
index cdc1be3..a4f5933 100755 (executable)
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diff --git a/lib/X86MAC64/libEosObjects.a b/lib/X86MAC64/libEosObjects.a
index 8547ff5..ed0ff07 100644 (file)
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diff --git a/lib/X86MAC64/libctfInfo.a b/lib/X86MAC64/libctfInfo.a
index c196007..c09b8b4 100644 (file)
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diff --git a/lib/X86MAC64/libmrcImage.a b/lib/X86MAC64/libmrcImage.a
index 5330496..1287a31 100644 (file)
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diff --git a/lib/X86MAC64/shared/lmrcImageMorphology.sharedo b/lib/X86MAC64/shared/lmrcImageMorphology.sharedo
index 52da382..bc2db49 100644 (file)
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diff --git a/lib/X86MAC64/shared/powerspectraTangentLine.sharedo b/lib/X86MAC64/shared/powerspectraTangentLine.sharedo
index b455462..7ebeca0 100644 (file)
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diff --git a/src/Objects/DataManip/ctfInfo/src/X86MAC64/libctfInfo.a b/src/Objects/DataManip/ctfInfo/src/X86MAC64/libctfInfo.a
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diff --git a/src/Objects/DataManip/ctfInfo/src/X86MAC64/libctfInfo.debug.a b/src/Objects/DataManip/ctfInfo/src/X86MAC64/libctfInfo.debug.a
index 53fec2d..7db8a5f 100644 (file)
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diff --git a/src/Objects/DataManip/ctfInfo/src/X86MAC64/powerspectraTangentLine.sharedo b/src/Objects/DataManip/ctfInfo/src/X86MAC64/powerspectraTangentLine.sharedo
index b455462..7ebeca0 100644 (file)
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diff --git a/src/Objects/DataManip/mrcImage/src/X86MAC64/libmrcImage.a b/src/Objects/DataManip/mrcImage/src/X86MAC64/libmrcImage.a
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diff --git a/src/Objects/DataManip/mrcImage/src/X86MAC64/libmrcImage.debug.a b/src/Objects/DataManip/mrcImage/src/X86MAC64/libmrcImage.debug.a
index fc97f09..0c7472b 100644 (file)
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diff --git a/src/Objects/DataManip/mrcImage/src/X86MAC64/lmrcImageMorphology.sharedo b/src/Objects/DataManip/mrcImage/src/X86MAC64/lmrcImageMorphology.sharedo
index 52da382..bc2db49 100644 (file)
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diff --git a/src/Objects/General/Cluster/src/X86MAC64/clusterLogWrite.sharedo b/src/Objects/General/Cluster/src/X86MAC64/clusterLogWrite.sharedo
index c5254d2..251c5f2 100644 (file)
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diff --git a/src/Objects/General/Cluster/src/X86MAC64/libCluster.a b/src/Objects/General/Cluster/src/X86MAC64/libCluster.a
index 29f7653..a6f13e9 100644 (file)
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diff --git a/src/Objects/General/Cluster/src/X86MAC64/libCluster.debug.a b/src/Objects/General/Cluster/src/X86MAC64/libCluster.debug.a
index 66add89..e45ccd6 100644 (file)
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diff --git a/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/.Depend b/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/.Depend
new file mode 100644 (file)
index 0000000..e06464c
--- /dev/null
+++ b/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/.Depend
@@ -0,0 +1,208 @@
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+  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+  /usr/include/sys/resource.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+  /usr/include/machine/endian.h /usr/include/i386/endian.h \
+  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+  ../inc/config.h ../inc/../inc/ctfEnvelopFunctionEstimate.h

diff --git a/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/Makefile b/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/Makefile
new file mode 100755 (executable)
index 0000000..ec61247
--- /dev/null
+++ b/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/Makefile
@@ -0,0 +1,114 @@
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES   = \
+                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
+
+LIBFILESDEBUG   = \
+                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
+
+SRCC  = \
+                       $(OBJECTNAME).c \
+                       init.c \
+                       argCheck.c \
+                       usage.c  \
+                       util.c 
+
+SRCCXX  = \
+                       $(OBJECTNAME).cc \
+                       init.cc \
+                       argCheck.cc \
+                       usage.cc  \
+                       util.cc 
+
+MODULES    = \
+                       $(OBJECTNAME).o \
+                       init.o \
+                       argCheck.o \
+                       usage.o  \
+                       util.o 
+
+REALMODULES    = \
+                       $(OSTYPE)/$(OBJECTNAME).o \
+                       $(OSTYPE)/init.o \
+                       $(OSTYPE)/argCheck.o \
+                       $(OSTYPE)/usage.o \
+                       $(OSTYPE)/util.o 
+
+MODULESDEBUG    = \
+                       $(OBJECTNAME).debugo \
+                       init.debugo \
+                       argCheck.debugo \
+                       usage.debugo  \
+                       util.debugo 
+
+MODULESCUDAGDB    = \
+                       $(OBJECTNAME).cudagdb.o \
+                       init.cudagdb.o \
+                       argCheck.cudagdb.o \
+                       usage.cudagdb.o  \
+                       util.cudagdb.o 
+
+REALMODULESDEBUG    = \
+                       $(OSTYPE)/$(OBJECTNAME).debugo \
+                       $(OSTYPE)/init.debugo \
+                       $(OSTYPE)/argCheck.debugo \
+                       $(OSTYPE)/usage.debugo \
+                       $(OSTYPE)/util.debugo 
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+       fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+       echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+       $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include  $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc

diff --git a/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/X86MAC64 b/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/X86MAC64
new file mode 120000 (symlink)
index 0000000..19babc9
--- /dev/null
+++ b/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/X86MAC64
@@ -0,0 +1 @@
+../../../../../hostdepend/X86MAC64/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64
\ No newline at end of file

diff --git a/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/ctfEnvelopFunctionEstimate b/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/ctfEnvelopFunctionEstimate
new file mode 100755 (executable)
index 0000000..afa768d
Binary files /dev/null and b/src/Tools/ctfInfo/ctfEnvelopFunctionEstimate/src/X86MAC64/ctfEnvelopFunctionEstimate differ

diff --git a/src/Tools/mrcImage/mrcImageBottomHatTransform/src/X86MAC64/mrcImageBottomHatTransform b/src/Tools/mrcImage/mrcImageBottomHatTransform/src/X86MAC64/mrcImageBottomHatTransform
index 10d3ab4..75e2890 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageBottomHatTransform/src/X86MAC64/mrcImageBottomHatTransform and b/src/Tools/mrcImage/mrcImageBottomHatTransform/src/X86MAC64/mrcImageBottomHatTransform differ

diff --git a/src/Tools/mrcImage/mrcImageClosing/src/X86MAC64/mrcImageClosing b/src/Tools/mrcImage/mrcImageClosing/src/X86MAC64/mrcImageClosing
index 2fdebb7..8883f69 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageClosing/src/X86MAC64/mrcImageClosing and b/src/Tools/mrcImage/mrcImageClosing/src/X86MAC64/mrcImageClosing differ

diff --git a/src/Tools/mrcImage/mrcImageDilation/src/X86MAC64/mrcImageDilation b/src/Tools/mrcImage/mrcImageDilation/src/X86MAC64/mrcImageDilation
index 80bb693..1fbe6fa 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageDilation/src/X86MAC64/mrcImageDilation and b/src/Tools/mrcImage/mrcImageDilation/src/X86MAC64/mrcImageDilation differ

diff --git a/src/Tools/mrcImage/mrcImageErosion/src/X86MAC64/mrcImageErosion b/src/Tools/mrcImage/mrcImageErosion/src/X86MAC64/mrcImageErosion
index 4fc8b1d..6778c86 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageErosion/src/X86MAC64/mrcImageErosion and b/src/Tools/mrcImage/mrcImageErosion/src/X86MAC64/mrcImageErosion differ

diff --git a/src/Tools/mrcImage/mrcImageOpening/src/X86MAC64/mrcImageOpening b/src/Tools/mrcImage/mrcImageOpening/src/X86MAC64/mrcImageOpening
index 8b0f718..e204a04 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageOpening/src/X86MAC64/mrcImageOpening and b/src/Tools/mrcImage/mrcImageOpening/src/X86MAC64/mrcImageOpening differ

diff --git a/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/.Depend b/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/.Depend
new file mode 100644 (file)
index 0000000..369ba3d
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/.Depend
@@ -0,0 +1,200 @@
+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+  /usr/include/sys/_symbol_aliasing.h \
+  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+  /usr/include/sys/_types.h /usr/include/machine/_types.h \
+  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+  /usr/include/stdlib.h /usr/include/sys/wait.h \
+  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+  /usr/include/machine/signal.h /usr/include/i386/signal.h \
+  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+  /usr/include/mach/i386/_structs.h \
+  /usr/include/sys/_types/_sigaltstack.h \
+  /usr/include/sys/_types/_ucontext.h \
+  /usr/include/sys/_types/_pthread_attr_t.h \
+  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+  /usr/include/sys/resource.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+  /usr/include/machine/endian.h /usr/include/i386/endian.h \
+  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+  ../inc/../inc/mrcImageShapeSearch.h \
+  /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/File.h \
+  /Users/tacyas/Eos/include/Memory.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
+  /usr/include/limits.h /usr/include/machine/limits.h \
+  /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+  /usr/include/sys/syslimits.h
+init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+  /usr/include/sys/_symbol_aliasing.h \
+  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+  /usr/include/sys/_types.h /usr/include/machine/_types.h \
+  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+  /usr/include/stdlib.h /usr/include/sys/wait.h \
+  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+  /usr/include/machine/signal.h /usr/include/i386/signal.h \
+  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+  /usr/include/mach/i386/_structs.h \
+  /usr/include/sys/_types/_sigaltstack.h \
+  /usr/include/sys/_types/_ucontext.h \
+  /usr/include/sys/_types/_pthread_attr_t.h \
+  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+  /usr/include/sys/resource.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+  /usr/include/machine/endian.h /usr/include/i386/endian.h \
+  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+  ../inc/../inc/mrcImageShapeSearch.h \
+  /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/File.h \
+  /Users/tacyas/Eos/include/Memory.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
+  /usr/include/limits.h /usr/include/machine/limits.h \
+  /usr/include/i386/limits.h /usr/include/i386/_limits.h \
+  /usr/include/sys/syslimits.h
+mrcImageShapeSearch.o: mrcImageShapeSearch.c /usr/include/stdio.h \
+  /usr/include/sys/cdefs.h /usr/include/sys/_symbol_aliasing.h \
+  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+  /usr/include/sys/_types.h /usr/include/machine/_types.h \
+  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+  /usr/include/stdlib.h /usr/include/sys/wait.h \
+  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+  /usr/include/machine/signal.h /usr/include/i386/signal.h \
+  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+  /usr/include/mach/i386/_structs.h \
+  /usr/include/sys/_types/_sigaltstack.h \
+  /usr/include/sys/_types/_ucontext.h \
+  /usr/include/sys/_types/_pthread_attr_t.h \
+  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+  /usr/include/sys/resource.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+  /usr/include/machine/endian.h /usr/include/i386/endian.h \
+  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+  /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
+  ../inc/../inc/mrcImageShapeSearch.h \
+  /Users/tacyas/Eos/include/genUtil.h \
+  /Users/tacyas/Eos/include/mrcImage.h \
+  /Users/tacyas/Eos/include/Matrix3D.h \
+  /Users/tacyas/Eos/include/Vector.h /Users/tacyas/Eos/include/Array.h \
+  /Users/tacyas/Eos/include/ctfInfo.h
+usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+  /usr/include/sys/_symbol_aliasing.h \
+  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+  /usr/include/sys/_types.h /usr/include/machine/_types.h \
+  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+  /usr/include/stdlib.h /usr/include/sys/wait.h \
+  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+  /usr/include/machine/signal.h /usr/include/i386/signal.h \
+  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+  /usr/include/mach/i386/_structs.h \
+  /usr/include/sys/_types/_sigaltstack.h \
+  /usr/include/sys/_types/_ucontext.h \
+  /usr/include/sys/_types/_pthread_attr_t.h \
+  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+  /usr/include/sys/resource.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+  /usr/include/machine/endian.h /usr/include/i386/endian.h \
+  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+  ../inc/config.h ../inc/../inc/mrcImageShapeSearch.h
+util.o: util.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
+  /usr/include/sys/_symbol_aliasing.h \
+  /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
+  /usr/include/AvailabilityInternal.h /usr/include/_types.h \
+  /usr/include/sys/_types.h /usr/include/machine/_types.h \
+  /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
+  /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
+  /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
+  /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
+  /usr/include/stdlib.h /usr/include/sys/wait.h \
+  /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
+  /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
+  /usr/include/machine/signal.h /usr/include/i386/signal.h \
+  /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
+  /usr/include/mach/i386/_structs.h \
+  /usr/include/sys/_types/_sigaltstack.h \
+  /usr/include/sys/_types/_ucontext.h \
+  /usr/include/sys/_types/_pthread_attr_t.h \
+  /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
+  /usr/include/sys/resource.h \
+  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
+  /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
+  /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
+  /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
+  /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
+  /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
+  /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
+  /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
+  /usr/include/machine/endian.h /usr/include/i386/endian.h \
+  /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
+  /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
+  /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
+  /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
+  /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
+  /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
+  ../inc/config.h ../inc/../inc/mrcImageShapeSearch.h

diff --git a/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/Makefile b/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/Makefile
new file mode 100755 (executable)
index 0000000..ec61247
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/Makefile
@@ -0,0 +1,114 @@
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
+include $(EOS_HOME)/src/Config/DefineTool.inc
+
+LIBFILES   = \
+                       $(LIBPREFIX)EosObjects$(LIBSUFFIX) 
+
+LIBFILESDEBUG   = \
+                       $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX) 
+
+SRCC  = \
+                       $(OBJECTNAME).c \
+                       init.c \
+                       argCheck.c \
+                       usage.c  \
+                       util.c 
+
+SRCCXX  = \
+                       $(OBJECTNAME).cc \
+                       init.cc \
+                       argCheck.cc \
+                       usage.cc  \
+                       util.cc 
+
+MODULES    = \
+                       $(OBJECTNAME).o \
+                       init.o \
+                       argCheck.o \
+                       usage.o  \
+                       util.o 
+
+REALMODULES    = \
+                       $(OSTYPE)/$(OBJECTNAME).o \
+                       $(OSTYPE)/init.o \
+                       $(OSTYPE)/argCheck.o \
+                       $(OSTYPE)/usage.o \
+                       $(OSTYPE)/util.o 
+
+MODULESDEBUG    = \
+                       $(OBJECTNAME).debugo \
+                       init.debugo \
+                       argCheck.debugo \
+                       usage.debugo  \
+                       util.debugo 
+
+MODULESCUDAGDB    = \
+                       $(OBJECTNAME).cudagdb.o \
+                       init.cudagdb.o \
+                       argCheck.cudagdb.o \
+                       usage.cudagdb.o  \
+                       util.cudagdb.o 
+
+REALMODULESDEBUG    = \
+                       $(OSTYPE)/$(OBJECTNAME).debugo \
+                       $(OSTYPE)/init.debugo \
+                       $(OSTYPE)/argCheck.debugo \
+                       $(OSTYPE)/usage.debugo \
+                       $(OSTYPE)/util.debugo 
+
+
+$(OBJECTNAME): $(MODULES) $(LIBFILES)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+               $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ;  \
+       fi
+
+
+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
+       @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
+       then \
+               echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
+       then \
+               echo "MICO"; \
+               echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+               $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@  ; \
+       fi
+       @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
+       then \
+               echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+               $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ;  \
+       fi
+
+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
+       echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
+       $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
+
+include ./.Depend
+include  $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc

diff --git a/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/X86MAC64 b/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/X86MAC64
new file mode 120000 (symlink)
index 0000000..a33c99b
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/X86MAC64
@@ -0,0 +1 @@
+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64
\ No newline at end of file

diff --git a/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/mrcImageShapeSearch b/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/mrcImageShapeSearch
new file mode 100755 (executable)
index 0000000..9327b75
Binary files /dev/null and b/src/Tools/mrcImage/mrcImageShapeSearch/src/X86MAC64/mrcImageShapeSearch differ

diff --git a/src/Tools/mrcImage/mrcImageTopHatTransform/src/X86MAC64/mrcImageTopHatTransform b/src/Tools/mrcImage/mrcImageTopHatTransform/src/X86MAC64/mrcImageTopHatTransform
index cdc1be3..a4f5933 100755 (executable)
Binary files a/src/Tools/mrcImage/mrcImageTopHatTransform/src/X86MAC64/mrcImageTopHatTransform and b/src/Tools/mrcImage/mrcImageTopHatTransform/src/X86MAC64/mrcImageTopHatTransform differ