+++ /dev/null
-../sbin/MachineIndependent
\ No newline at end of file
+++ /dev/null
-#!/usr/bin/ruby -I /home/people/risachan/Eos/lib/X86LINUX64
-require 'molvieRuby'
-require 'molvie'
-require "tk"
-
-class PdbFile
-
-#def initialize
-#@fname = fname
-#@info = molvieInfo::new
-#end
-
-def file_read
-puts"ok"
-fname = Tk.getOpenFile
-@fname = fname
-puts @fname
-if @fname == nil
-puts"file loading Error\n"
-end
-fptIn= open(@fname)
-
-puts"okokok\n"
-Molvie.start(@fname)
-end
-
-def fname
-return @fname
-end
-
-end
+++ /dev/null
-OBJECTNAME = eosPointTracker
-EXTRA_LIB =
-EXTRA_CCOPTS =
-EXTRA_INC =
+++ /dev/null
-# OptionControlFile
-# FileFormat
-"-i","-i[nput]","Input: Tracker2D[eosPoint]","Essential","1","1","In","inFileList::ASCII::eosPoint","NULL"
-"-iP","-i[nput]P[arameter]","Input: InitialParams","Essential","1","1","InParam","inFileList::ASCII","NULL"
-"-o","-o[utput]","Output: Tracker3D[eosPoint]","Essential","1","1","Out","outFile::ASCII::eosPoint","NULL"
-"-o2D","-o[utput]2D","Output: Tracker3D[eosPoint]","Essential","1","1","Out2D","outFileList::ASCII::eosPoint","NULL"
-"-oP","-o[utput]P[arameter]","Output: Params","Essential","1","1","OutParam","outFileList::ASCII","NULL"
-"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
-"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
+++ /dev/null
-/Users/tacyas/Eos/src/Config/Template/ToolsTemplate.Dir/Makefile
\ No newline at end of file
+++ /dev/null
-/Users/tacyas/Eos/src/Config/Template/ToolsTemplate.Dir/doc/Makefile
\ No newline at end of file
+++ /dev/null
-#ifndef CONFIG_H
-#define CONFIG_H
-
-#include "../inc/eosPointTracker.h"
-
-#endif /* CONFIG_H */
+++ /dev/null
-#ifndef EOSPOINTTRACKER_H
-#define EOSPOINTTRACKER_H
-#include <stdio.h>
-#include <stdlib.h>
-
-#define OPTION_FLAG '-'
-#define OPTION_FLAG_POS (0)
-#define OPTION_POS (1)
-
-
-
-
-typedef struct eosPointTrackerInfo {
- long flagRedirect;
-
- long flagIn;
- char** In;
- char* InList;
- FILE** fptIn;
- FILE* fptInList;
-
- long flagInParam;
- char** InParam;
- char* InParamList;
- FILE** fptInParam;
- FILE* fptInParamList;
-
- long flagOut;
- char* Out;
- FILE* fptOut;
-
- long flagOut2D;
- char** Out2D;
- char* Out2DList;
- FILE** fptOut2D;
- FILE* fptOut2DList;
-
- long flagOutParam;
- char** OutParam;
- char* OutParamList;
- FILE** fptOutParam;
- FILE* fptOutParamList;
-
- long flagconfigFile;
- char* configFile;
- FILE* fptconfigFile;
-
- long flagmode;
- long mode;
-
-} eosPointTrackerInfo;
-#ifdef __cplusplus
-extern "C" {
-#endif
-extern void argCheck(eosPointTrackerInfo* info, int argc, char* avgv[]);
-extern void khorosInit(int argc, char* avgv[]);
-extern void init0(eosPointTrackerInfo* info);
-extern void init1(eosPointTrackerInfo* info);
-extern void usage(char* usage);
-extern void additionalUsage(void);
-extern void htmlBeforeUsage(char* usage);
-extern void htmlAfterUsage(char* usage);
-#ifdef __cplusplus
-};
-#endif
-#endif /* EOSPOINTTRACKER_H */
+++ /dev/null
-include ../Config/Define.inc
-include ../../Config/Define.inc
-include ../../../Config/Define.inc
-include ../../../../Config/Define.inc
-
-EOSHOME=../../../../../
-DSTDIR=$(EOSHOME)/bin
-DSTDOC=$(EOSHOME)/doc
-DSTTAR=$(EOSHOME)/tar
-
-INCFILES =
-
-LIBFILES = \
- $(LIBPREFIX)EosObjects$(LIBSUFFIX)
-
-LIBFILESDEBUG = \
- $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
-
-SRCC = \
- $(OBJECTNAME).c \
- init.c \
- argCheck.c \
- usage.c \
- util.c \
-
-SRCCXX = \
- $(OBJECTNAME).cc \
- init.cc \
- argCheck.cc \
- usage.cc \
- util.cc \
-
-MODULES = \
- $(OBJECTNAME).o \
- init.o \
- argCheck.o \
- usage.o \
- util.o \
-
-REALMODULES = \
- $(OSTYPE)/$(OBJECTNAME).o \
- $(OSTYPE)/init.o \
- $(OSTYPE)/argCheck.o \
- $(OSTYPE)/usage.o \
- $(OSTYPE)/util.o
-
-MODULESDEBUG = \
- $(OBJECTNAME).debugo \
- init.debugo \
- argCheck.debugo \
- usage.debugo \
- util.debugo \
-
-REALMODULESDEBUG = \
- $(OSTYPE)/$(OBJECTNAME).debugo \
- $(OSTYPE)/init.debugo \
- $(OSTYPE)/argCheck.debugo \
- $(OSTYPE)/usage.debugo \
- $(OSTYPE)/util.debugo
-
-
-all: $(OSTYPE)/$(OBJECTNAME)
- if [ ! -L $(OSTYPE) ] ; then \
- moveHostdependent; \
- fi
-
-debug: $(OSTYPE)/$(OBJECTNAME).debug
-
-cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
-
-
-$(OSTYPE)/$(OBJECTNAME)::
- @$(RM) -f $(OSTYPE)/Makefile ; \
- $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
- cd $(OSTYPE); \
- $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
-
-$(OSTYPE)/$(OBJECTNAME).debug::
- @$(RM) -f $(OSTYPE)/Makefile ; \
- $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
- cd $(OSTYPE); \
- $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
-
-$(OSTYPE)/$(OBJECTNAME).cudagdb::
- @$(RM) -f $(OSTYPE)/Makefile ; \
- $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
- cd $(OSTYPE); \
- $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
-
-cvsupdate::
- cvs -d $(EOS_CVSROOT) update -d
-
-cvscommit::
- cvs -d $(EOS_CVSROOT) commit
-
-edit:
- @if [ -r $(OBJECTNAME).c ]; \
- then \
- sccsEdit $(OBJECTNAME).c; \
- else \
- echo "Source files are already editable"; \
- fi
- @if [ -r wish/$(OBJECTNAME).wish ]; \
- then \
- cd wish; sccsEdit $(OBJECTNAME).wish; \
- else \
- echo "Source files (wish) are already editable."; \
- fi
- @if [ -r ruby/$(OBJECTNAME).rb ]; \
- then \
- cd ruby; sccsEdit $(OBJECTNAME).rb; \
- else \
- echo "Source files (ruby) are already editable."; \
- fi
- @if [ -r perl/$(OBJECTNAME).pl ]; \
- then \
- cd perl; sccsEdit $(OBJECTNAME).pl ; \
- else \
- echo "Source files (perl) are already editable."; \
- fi
- @if [ -r ../Config/OptionControlFile ]; \
- then \
- cd ../Config; sccsEdit OptionControlFile; \
- else \
- echo "OptionControlFile are already editable."; \
- fi
-
-unedit:
- @if [ -w $(OBJECTNAME).c ]; \
- then \
- sccsUnedit $(OBJECTNAME).c; \
- else \
- echo "Source files are not editable"; \
- fi
- @if [ -w wish/$(OBJECTNAME).wish ]; \
- then \
- cd wish; sccsUnedit $(OBJECTNAME).wish; \
- else \
- echo "Source files (wish) are not editable."; \
- fi
- @if [ -w ruby/$(OBJECTNAME).rb]; \
- then \
- cd ruby; sccsUnedit $(OBJECTNAME).rb; \
- else \
- echo "Source files (ruby) are not editable."; \
- fi
- @if [ -w perl/$(OBJECTNAME).pl ]; \
- then \
- cd perl; sccsUnedit $(OBJECTNAME).pl ; \
- else \
- echo "Source files (ruby) are not editable."; \
- fi
- @if [ -w ../Config/OptionControlFile ]; \
- then \
- cd ../Config; sccsUnedit OptionControlFile; \
- else \
- echo "OptionControlFile are not editable."; \
- fi
-
-report:
- @if [ -r $(OBJECTNAME).c ]; \
- then \
- sccsReport $(OBJECTNAME).c; \
- else \
- echo "Source files are already editable"; \
- fi
- @if [ -r wish/$(OBJECTNAME).wish ]; \
- then \
- cd wish; sccsReport $(OBJECTNAME).wish; \
- else \
- echo "Source files (wish) are already editable."; \
- fi
- @if [ -r ruby/$(OBJECTNAME).rb ]; \
- then \
- cd ruby; sccsReport $(OBJECTNAME).rb; \
- else \
- echo "Source files (ruby) are already editable."; \
- fi
- @if [ -r perl/$(OBJECTNAME).pl ] ; \
- then \
- cd perl; sccsReport $(OBJECTNAME).pl ; \
- else \
- echo "Source files (perl) are already editable."; \
- fi
- @if [ -r ../Config/OptionControlFile ]; \
- then \
- cd ../Config; sccsReport OptionControlFile; \
- else \
- echo "OptionControlFile are already editable."; \
- fi
-
-clean :
- rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
- $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
- $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
- $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
- $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
- *.bak *.$(OSTYPE) core
-
-install: install-bin install-doc install-wish install-ruby install-shell install-perl
- @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
- then \
- if [ -x $(KHOROS_KGENOBJ) ] ; \
- then \
- make install-khoros ; \
- fi; \
- fi
-
-install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
-
-$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
- @echo ---- Installing to bin
- @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
- @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
- then \
- mkdir $(DSTDIR)/$(OSTYPE); \
- fi
- @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
- then \
- echo "Compilation is complete"; \
- $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
- $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
- $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
- else \
- echo "Compilation is incomplete. $(OBJECTNAME)"; \
- fi
- @echo ---- end of bin
-
-install-wish:
- @if [ -d wish ]; \
- then \
- echo "---- Tcl/Tk file Install"; \
- if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
- then \
- mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
- fi ; \
- $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
- $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
- touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
- $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
- echo "---- Tcl/Tk file Installed";\
- fi
-
-install-ruby:
- @if [ -d ruby ]; \
- then \
- echo "---- Ruby/Tk file Install"; \
- if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
- then \
- mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
- fi ; \
- $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
- $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
- echo "---- Ruby/Tk file Installed"; \
- fi
-
-install-perl:
- @if [ -d perl ]; \
- then \
- echo "---- Perl/Tk file Install"; \
- if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
- then \
- mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
- fi; \
- $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
- $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
- echo "---- Perl/Tk file Installed"; \
- fi
-
-install-shell:
- @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
- then \
- mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
- fi
- @if [ -d shell ]; \
- then \
- echo "---- Shell file Install"; \
- if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
- then \
- mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
- fi ; \
- $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
- $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
- echo "---- Shell file Installed"; \
- fi
-
-install-khoros:
- @echo Installing to khoros
- @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
- then \
- echo kgenobj;\
- $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
- fi
- @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
- then \
- $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
- fi
- @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
- then \
- $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
- if [ $? ] ; \
- then \
- echo "-- setting khoros ---" ; \
- if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
- then \
- $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
- $(RM) -f $(OBJECTNAME).pane ; \
- $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
- $(CD) ../../ ; \
- $(CHMOD) -R 555 $(OBJECTNAME); \
- else \
- echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
- fi ; \
- else \
- echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
- fi ; \
- echo "-- end of khoros-installing"; \
- fi
-
-install-doc: html
- @if [ ! -d $(DSTDOC)/SmallTools ]; \
- then \
- mkdir $(DSTDOC)/SmallTools ;\
- fi
- @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
- then \
- $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
- fi
- @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
- @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
- @if [ -f ../doc/*.html ]; \
- then \
- $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
- fi
- @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
- @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
- then \
- cd $(DSTDOC)/SmallTools; $(MAKE); \
- fi
-
-html: $(OBJECTNAME).html
-
-configFileRead:
- @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
-
-$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
- @echo creating html
- @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
- @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
- @$(RM) $(OBJECTNAME).html.tmp
-
-$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
- @ln -s -f ../sbin/MachineIndependent $@
-
-depend::
- @echo dependency checking now
- @if [ ! -L $(OSTYPE) ] ; then \
- moveHostdependent; \
- fi
- rm -f $(OSTYPE)/.Depend
- #echo C
- @if [ -f $(OBJECTNAME).c ] ; \
- then \
- echo "dependency: *.c"; \
- echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
- $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
- fi
- #echo CC
- @if [ -f $(OBJECTNAME).cc ] ; \
- then \
- echo "dependency: *.cc"; \
- echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
- $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
- fi
- @if [ -f $(OBJECTNAME).ccm ] ; \
- then \
- echo "dependency: *.ccm"; \
- echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
- $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
- fi
- @if [ -f $(OBJECTNAME).cu ] ; \
- then \
- echo "dependency: *.cu"; \
- echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
- $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
- fi
-
-update:../Config/OptionControlFile
- maketool $(CLASSNAME) $(OBJECTNAME) update
-
-changeName::
-
-Test:$(OSTYPE)/$(OBJECTNAME) TestDir
- @if [ -f test/Makefile ] ; \
- then \
- cd test; make ; \
- else \
- echo "No test Makefile"; \
- fi
-
-TestDir::
- @if [ ! -d test ] ; \
- then \
- echo "Creating test dir"; \
- mkdir test; \
- fi
- @if [ ! -f test/Makefile ] ; \
- then \
- echo "Creating Makefile"; \
- cd test; \
- protoTestMakefileCreate; \
- fi
- @if [ ! -d test/data ]; \
- then \
- mkdir $(EOSHOME)/data/$(OBJECTNAME); \
- cd test; \
- ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
- fi
-
-tar::
- cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
- ../bin/*/$(OBJECTNAME).* \
- ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
- ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
-
--include $(OSTYPE)/.Depend
--include ../Config/Target.inc
+++ /dev/null
-../../../../../hostdepend/X86MAC64/src/Tools/eosPoint/eosPointTracker/src/X86MAC64
\ No newline at end of file
+++ /dev/null
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-#include <math.h>
-#include "../inc/config.h"
-#include "genUtil.h"
-#include "String.h"
-#include "File.h"
-#include "Memory.h"
-
-
-void
-argCheck(eosPointTrackerInfo* info, int argc, char* argv[])
-{
- long i;
- char s[1024];
- FILE* fpt;
-
- if(NULL==(fpt=fopen(".EosLog", "a+"))) {
-
- } else {
- for(i=0; i<argc; i++) {
- fprintf(fpt, "%s ", argv[i]);
- }
- fprintf(fpt, "\n");
- fclose(fpt);
- }
- for(i=1; i<argc; i++) {
- if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
- SSWITCH(argv[i]+OPTION_POS)
- SCASE("i") {
- if(i+1<argc) {
- info->InList = stringGetNthWord(argv[i+1], 1, " ,");
- i++;
- info->flagIn++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("iP") {
- if(i+1<argc) {
- info->InParamList = stringGetNthWord(argv[i+1], 1, " ,");
- i++;
- info->flagInParam++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("o") {
- if(i+1<argc) {
- info->Out = stringGetNthWord(argv[i+1], 1, " ,");
- i++;
- info->flagOut++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("o2D") {
- if(i+1<argc) {
- info->Out2DList = stringGetNthWord(argv[i+1], 1, " ,");
- i++;
- info->flagOut2D++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("oP") {
- if(i+1<argc) {
- info->OutParamList = stringGetNthWord(argv[i+1], 1, " ,");
- i++;
- info->flagOutParam++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("c") {
- if(i+1<argc) {
- info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
- i++;
- info->flagconfigFile++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("m") {
- if(i+1<argc) {
- info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
- i++;
- info->flagmode++;
- } else {
- usage(argv[0]);
- exit(EXIT_FAILURE);
- }
- SBREAK;
- }
- SCASE("h") {
- usage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SCASE("html") {
- htmlBeforeUsage(argv[0]);
- usage(argv[0]);
- htmlAfterUsage(argv[0]);
- exit(EXIT_SUCCESS);
- break;
- }
- SDEFAULT {
- fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
- usage(argv[0]);
- exit(EXIT_FAILURE);
- break;
- }
- SSWITCHEND;
- }
- }
-}
+++ /dev/null
-/*
-# eosPointTracker : $Revision$
-# $Date$
-# Created by $Author$
-# Usage : eosPointTracker
-# Attention
-# $Loccker$
-# $State$
-#
-*/
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-#include <math.h>
-#define GLOBAL_DECLARATION
-#include "../inc/config.h"
-
-#define DEBUG
-#include "genUtil.h"
-#include "eosPoint.h"
-
-/*
-Example:
-typedef struct leosPointTrackerInfo {
- float a;
- int b;
-} leosPointTrackerInfo;
-
-typedef enum leosPointTrackerMode {
- a=0,
- b=1
-} leosPointTrackerMode;
-*/
-
-int
-main(int argc, char* argv[])
-{
- eosPointTrackerInfo info;
-
- init0(&info);
- argCheck(&info, argc, argv);
- init1(&info);
-
- DEBUGPRINT("Program Start\n");
-
- exit(EXIT_SUCCESS);
-}
-
-void
-additionalUsage()
-{
- fprintf(stderr, "----- Additional Usage -----\n");
- fprintf(stderr, "----- input; -i -----\n");
- fprintf(stderr, "-i pointListPerEachImage\n");
- fprintf(stderr, "point2d.000\n");
- fprintf(stderr, "point2d.001\n");
- fprintf(stderr, ".....\n");
- fprintf(stderr, "EachFile::eosPoint(type3)\n");
- fprintf(stderr, "x0 y0 0 weight0 sigx0 sigy0 0\n");
- fprintf(stderr, "x1 y1 0 weight1 sigx1 sigy1 0\n");
- fprintf(stderr, ".....\n");
- fprintf(stderr, "----- input; -iP -----\n");
- fprintf(stderr, "matInit.000\n");
- fprintf(stderr, "matInit.001\n");
- fprintf(stderr, ".....\n");
- fprintf(stderr, "EachFile:: ex.tiltSeries tiltInfo Y->X->Z\n");
- fprintf(stderr, "image000 YOYS tiltAngle0 tiltAxisBeta0 tiltAxisAlpha0 axisShiftX0 axisShiftY0\n");
- fprintf(stderr, "image001 YOYS tiltAngle1 tiltAxisBeta1 tiltAxisAlpha1 axisShiftX1 axisShiftY1\n");
- fprintf(stderr, ".....\n");
-}
+++ /dev/null
-<HTML>
-<HEAD>
-<TITLE>eosPointTracker</TITLE>
-</HEAD>
-<BODY>
-<H1>eosPointTracker</H1>
-<H2>Usage</H2>
-<PRE>
-Usage: eosPointTracker
-Options:
- [-i[nput] In (NULL ).as(inFileList::ASCII::eosPoint) ] :Essential :Input: Tracker2D[eosPoint]
- [-i[nput]P[arameter] InParam (NULL ).as(inFileList::ASCII ) ] :Essential :Input: InitialParams
- [-o[utput] Out (NULL ).as(outFile::ASCII::eosPoint) ] :Essential :Output: Tracker3D[eosPoint]
- [-o[utput]2D Out2D (NULL ).as(outFileList::ASCII::eosPoint) ] :Essential :Output: Tracker3D[eosPoint]
- [-o[utput]P[arameter]OutParam (NULL ).as(outFileList::ASCII ) ] :Essential :Output: Params
- [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
- [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
------ Additional Usage -----
------ input; -i -----
--i pointListPerEachImage
-point2d.000
-point2d.001
-.....
-EachFile::eosPoint(type3)
-x0 y0 0 weight0 sigx0 sigy0 0
-x1 y1 0 weight1 sigx1 sigy1 0
-.....
------ input; -iP -----
-matInit.000
-matInit.001
-.....
-EachFile:: ex.tiltSeries tiltInfo Y->X->Z
-image000 YOYS tiltAngle0 tiltAxisBeta0 tiltAxisAlpha0 axisShiftX0 axisShiftY0
-image001 YOYS tiltAngle1 tiltAxisBeta1 tiltAxisAlpha1 axisShiftX1 axisShiftY1
-.....
-</PRE>
-</BODY>
-</HTML>
+++ /dev/null
--F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
- -M 1 1 52x1+0+0 +1+0 ' ' subform
- -P 1 0 52x1+0+1 +0+0 ' ' eosPointTracker
- -D 1 0 9x1+0+0 'Options' _gui_options
- -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
- -E
- -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/eosPointTracker
- -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/eosPoint/eosPointTracker/doc/eosPointTracker.doc help
- -Q 1 0 5.25x1+47+0 'Close'
- -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'Input: Tracker2D[eosPoint]' i
- -I 1 0 1 1 0 1 -1x1+1+3.000000 ' ' 'InParam' 'Input: InitialParams' iP
- -O 1 0 1 1 0 1 -1x1+1+4.500000 ' ' 'Out' 'Output: Tracker3D[eosPoint]' o
- -O 1 0 1 1 0 1 -1x1+1+6.000000 ' ' 'Out2D' 'Output: Tracker3D[eosPoint]' o2D
- -O 1 0 1 1 0 1 -1x1+1+7.500000 ' ' 'OutParam' 'Output: Params' oP
- -I 1 0 1 0 0 1 -1x1+1+9.000000 ' ' 'configFile' 'ConfigurationFile' c
- -i 1 0 1 0 0 -1x1+1+10.500000 0 0 0 0 0 'mode' 'Mode' m
- -E
- -E
--E
+++ /dev/null
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-#include <math.h>
-#include "../inc/config.h"
-#include "genUtil.h"
-#include "String.h"
-#include "File.h"
-#include "Memory.h"
-
-
-void
-init0(eosPointTrackerInfo* info)
-{
- info->fptIn = NULL; info->fptInList = NULL; info->flagIn = 0;
- info->fptInParam = NULL; info->fptInParamList = NULL; info->flagInParam = 0;
- info->fptOut = NULL; info->flagOut = 0;
- info->fptOut2D = NULL; info->fptOut2DList = NULL; info->flagOut2D = 0;
- info->fptOutParam = NULL; info->fptOutParamList = NULL; info->flagOutParam = 0;
- info->fptconfigFile = NULL; info->flagconfigFile = 0;
- info->mode = 0; info->flagmode = 0;
-}
-
-void
-init1(eosPointTrackerInfo* info)
-{
- char s[1024];
- int i;
- if(!info->flagIn) {
- stringGetFromFile(s, "In", stdin, stdout, 0);
- info->InList = stringGetNthWord(s, 1, " ,\t");
- info->flagIn++;
- }
- if(info->flagIn) {
- info->fptInList = fileOpen(info->InList, "r");
- fseek(info->fptInList, 0L, SEEK_SET);
- i=0;
- while(NULL!=stringGetFromFile(s, "", info->fptInList, stdout, 1)) {
- i++;
- }
- info->fptIn = (FILE**)memoryAllocate(i*sizeof(FILE*), "in init1");
- info->In = (char**)memoryAllocate(i*sizeof(char*), "in init1");
- info->flagIn = i;
- fseek(info->fptInList, 0L, SEEK_SET);
- i=0;
- while(NULL!=stringGetFromFile(s, "", info->fptInList, stdout, 1)) {
- info->In[i] = stringGetNthWord(s, 1, " ,\t");
- info->fptIn[i] = fileOpen(info->In[i],"r");
- i++;
- }
- }
-
- if(!info->flagInParam) {
- stringGetFromFile(s, "InParam", stdin, stdout, 0);
- info->InParamList = stringGetNthWord(s, 1, " ,\t");
- info->flagInParam++;
- }
- if(info->flagInParam) {
- info->fptInParamList = fileOpen(info->InParamList, "r");
- fseek(info->fptInParamList, 0L, SEEK_SET);
- i=0;
- while(NULL!=stringGetFromFile(s, "", info->fptInParamList, stdout, 1)) {
- i++;
- }
- info->fptInParam = (FILE**)memoryAllocate(i*sizeof(FILE*), "in init1");
- info->InParam = (char**)memoryAllocate(i*sizeof(char*), "in init1");
- info->flagInParam = i;
- fseek(info->fptInParamList, 0L, SEEK_SET);
- i=0;
- while(NULL!=stringGetFromFile(s, "", info->fptInParamList, stdout, 1)) {
- info->InParam[i] = stringGetNthWord(s, 1, " ,\t");
- info->fptInParam[i] = fileOpen(info->InParam[i],"r");
- i++;
- }
- }
-
- if(!info->flagOut) {
- stringGetFromFile(s, "Out", stdin, stdout, 0);
- info->Out = stringGetNthWord(s, 1, " ,\t");
- info->flagOut++;
- }
- if(info->flagOut) {
- info->fptOut = fileOpen(info->Out, "w");
- }
-
- if(!info->flagOut2D) {
- stringGetFromFile(s, "Out2D", stdin, stdout, 0);
- info->Out2DList = stringGetNthWord(s, 1, " ,\t");
- info->flagOut2D++;
- }
- if(info->flagOut2D) {
- info->fptOut2DList = fileOpen(info->Out2DList, "r");
- fseek(info->fptOut2DList, 0L, SEEK_SET);
- i=0;
- while(NULL!=stringGetFromFile(s, "", info->fptOut2DList, stdout, 1)) {
- i++;
- }
- info->fptOut2D = (FILE**)memoryAllocate(i*sizeof(FILE*), "in init1");
- info->Out2D = (char**)memoryAllocate(i*sizeof(char*), "in init1");
- info->flagOut2D = i;
- fseek(info->fptOut2DList, 0L, SEEK_SET);
- i=0;
- while(NULL!=stringGetFromFile(s, "", info->fptOut2DList, stdout, 1)) {
- info->Out2D[i] = stringGetNthWord(s, 1, " ,\t");
- info->fptOut2D[i] = fileOpen(info->Out2D[i],"w");
- i++;
- }
- }
-
- if(!info->flagOutParam) {
- stringGetFromFile(s, "OutParam", stdin, stdout, 0);
- info->OutParamList = stringGetNthWord(s, 1, " ,\t");
- info->flagOutParam++;
- }
- if(info->flagOutParam) {
- info->fptOutParamList = fileOpen(info->OutParamList, "r");
- fseek(info->fptOutParamList, 0L, SEEK_SET);
- i=0;
- while(NULL!=stringGetFromFile(s, "", info->fptOutParamList, stdout, 1)) {
- i++;
- }
- info->fptOutParam = (FILE**)memoryAllocate(i*sizeof(FILE*), "in init1");
- info->OutParam = (char**)memoryAllocate(i*sizeof(char*), "in init1");
- info->flagOutParam = i;
- fseek(info->fptOutParamList, 0L, SEEK_SET);
- i=0;
- while(NULL!=stringGetFromFile(s, "", info->fptOutParamList, stdout, 1)) {
- info->OutParam[i] = stringGetNthWord(s, 1, " ,\t");
- info->fptOutParam[i] = fileOpen(info->OutParam[i],"w");
- i++;
- }
- }
-
- if(info->flagconfigFile) {
- info->fptconfigFile = fileOpen(info->configFile, "r");
- }
-
- if(info->flagmode) {
- }
-
-}
-#ifdef KHOROS
-#include <stdio.h>
-#include "bootstrap.h"
-#include "dataserv.h"
-#include "datamanip.h"
-extern void func_usage_additions(void);
-extern void func_free_args(kexit_status status, kaddr client_data);
-extern void func_get_args(kform* pane);
-
-void
-func_usage_additions(void)
-{
-}
-void
-func_free_args(kexit_status status, kaddr client_data)
-{
-}
-void
-func_get_args(kform* pane)
-{
-}
-void
-khorosInit(int argc, char* argv[])
-{
- char* eospath;
- char panepath[1024];
- FILE* fpt;
-
- eospath = getenv("EOS_HOME");
- sprintf(panepath, "%s/src/Tools/eosPoint/eosPointTracker/src/eosPointTracker.pane", eospath);
- khoros_initialize(argc, argv, "EOS");
- fpt = fopen(panepath, "r"); if(NULL!=fpt) {
- fclose(fpt);
- kclui_initialize(panepath, KGEN_NONE, "EOS", "eosPointTracker",
- func_usage_additions,
- func_get_args,
- func_free_args);
- }
-}
-#endif /* KHOROS */
+++ /dev/null
-include ../../Config/Define.inc
-include ../../../Config/Define.inc
-include ../../../../Config/Define.inc
-include ../../../../../Config/Define.inc
-
-all: help exec
-
-help:
- @echo "----- Help Message Check -----"
- @../$(OSTYPE)/$(OBJECTNAME) -h
-
-exec:
- @echo "----- Execution Check -----"
- ../$(OSTYPE)/$(OBJECTNAME)
- @echo "----- Calc check -----"
-
-clean:
-
-initial::
- eosPointRotation -i point.3d.000 -it 3 -o point3d.$$num -ot 3 -
-
+++ /dev/null
-../../../../../..//data/eosPointTracker
\ No newline at end of file
+++ /dev/null
-#include <stdio.h>
-#include <stdlib.h>
-#include "../inc/config.h"
-
-void
-usage(char* thisProgram)
-{
- fprintf(stderr, "Usage: %s\n", thisProgram);
- fprintf(stderr, "Options:\n");
- fprintf(stderr, " [-i[nput] In (NULL ).as(inFileList::ASCII::eosPoint) ] :Essential :Input: Tracker2D[eosPoint]\n");
- fprintf(stderr, " [-i[nput]P[arameter] InParam (NULL ).as(inFileList::ASCII ) ] :Essential :Input: InitialParams\n");
- fprintf(stderr, " [-o[utput] Out (NULL ).as(outFile::ASCII::eosPoint) ] :Essential :Output: Tracker3D[eosPoint]\n");
- fprintf(stderr, " [-o[utput]2D Out2D (NULL ).as(outFileList::ASCII::eosPoint) ] :Essential :Output: Tracker3D[eosPoint]\n");
- fprintf(stderr, " [-o[utput]P[arameter]OutParam (NULL ).as(outFileList::ASCII ) ] :Essential :Output: Params\n");
- fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
- fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
- additionalUsage();
-}
-
-void
-htmlBeforeUsage(char* thisProgram)
-{
- fprintf(stderr, "<HTML>\n");
- fprintf(stderr, "<HEAD>\n");
- fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
- fprintf(stderr, "</HEAD>\n");
- fprintf(stderr, "<BODY>\n");
- fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
- fprintf(stderr, "<H2>Usage</H2>\n");
- fprintf(stderr, "<PRE>\n");
-}
-
-void
-htmlAfterUsage(char* thisProgram)
-{
- fprintf(stderr, "</PRE>\n");
- fprintf(stderr, "</BODY>\n");
- fprintf(stderr, "</HTML>\n");
-}
+++ /dev/null
-#include <stdio.h>
-#include <stdlib.h>
-#include "../inc/config.h"
-
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